Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0010130 | OGI:05031940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:12388055-12392537 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcgagcgccgcctcgcgcaggggttcaccggcctgctgcaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccggggtgcccgggccgggaaggagttcttcctcgccgcggccgtcgcctccatcatcgacatcggcaggaggccaccggcgccagggaggtgattctgccactccgcgcctcaccggtctccactctccatctcgccgccgccaccacgtccgccctctgccgcagatagaggtacacatcccctcacccatccctaatatgtcagctctcttccaaataagtCcccccgccggctatatttcaattttattatgctgcaagtaatccgcgtcgtcacattcaatactatggtgatcatataatttggagtacatgtttagAaaaaaaaactaatgcactaaacacaatgatgatttgaatgaatcaattattgctgacgatcgcatctgaatcaatggtagtttacccttgaatgatttgtctctgttcttctatgtttggtggtggtggtattatatacatgtttagacaaaaaaactaatgcagtataatttgcatatgttcttctgttcggttaccggaactatcataatacatttattcgtcaccattttctgatgcttgttatataaatatgagcatctctttcagtgatatcctctaaatatgtttcctgtgacatcctctaaattcacaatggaaacgtgttactgattcgaagtctcaatgcagtgacatgtttatttggacacatgtataattggagtacatgcatttgtgataagtttccttggtaaatgcaatgtgttcttcatcattgtcaattattctaggaggccttgatatgtcagttaccggattcatggccattgttccacaccctaggaattatttgaagggcaatatttttatgaagcttaaagattgaatttgaatccatctgccctggcttgaaggtgaacatgattttatttttaagattgcattttagttactcttaacatactccagttactcaatcatatacatatctgtttcacacatgatctatttatgcacttttgtcgcgtttagtctaaaacgatgctgtcaaattttaaaagggcattgctttactaaattgtggtgtatgtagtattagcatgtcaaattacatttatgcgtttcttgcttcccgaccatatgtcaaataactgaaagtgttagtacttgagttaacccttttttcatacttatgccatatagcaccctaattttgttcatgcgatcagaggataaaatattaagaggattctttagtatggctcattttattgtttctaagtttagggttattcagacagataacactttagctttctatataatattggttttacaactttgtctctcgaaggttttttttttttggaacgtattgatggttttcctcataatatgctcttgaaatccatcttgtccctgttcaatgcagtacaatccaaatattatggtatatcaacagcagcttcagtctgggacagagcaatacaaggtcctccctgtaagtttagtatgaacagtgcaatcaaatttataagtcttccctatcaaaatttcagtatagccccatttgtgctggtctgattaattatctttgaaatgatattctgctttgagattaaattacatgtaactaacttgctttgataccttcacaagtcgtgaaatggtttagctgtacttccatgtttgggttacttgtgtaatatttggtaggctataaacccatttgttgtgcctttttttttattatattgctcaataaagatagtcaatcaatgtgttgtaaataataagggaattggcttgtatcatttgtttcttctatgctcaagatcctgaactgttgtgcatgtatcatttgttgccactgagtcattatttggattcatcagagaacatccatcattttgattaccagactatggactgatttatgccatgcttgctaattgatagagggacatttgctacttctgcatataggacagataattaaactttttgtgcgctgaaatgctctttgtacggtgagtatatgacacgctaaagatgactgaaattaaacttaggatacttctgtttgcaactataagacatgagttcttttgctatatttctggataggtggagtaggttttatttttaagagtttggtctgtggattttcgtctgccgatgagtctccaatgtttgatacagtgtagcccatgagcagctgctgttttctgattttttttttcaaggtaatgtagctgctttgtgtatatgtgtttgtccaatagtgcctgccattccctttggatggtttgcattgcagatgaattacgattgccatctcatgttgctatggcactatgctaagtgaatcttgttcacttcctttattcaagcacaaggaatttatgtatgttcattatgaaatctgtaagttagataatgaacatacataaattcactagctgttgtgttatcacattgattgtaacatcaaaacaatcaactactagaaaatactaaagtttctaaatggttatcagaacacactggaaTttttttatgggcttactgttccacactgcattccttcacaattgaagtttgccatctcttatggcactcttttagcttgataatctgaaaaaatagatgactaaatctatagtttccttttatccaggaggagatttggcttttcagtatgcttcagtaaggatttagcagatggcaatctttgctggtatgtagagtatttcattaggctaatcgcctatttgttgatgatcataattggcacataaattgataaatttgtattgatgattctactcattttaaatgttatatggtagcatcctttgtttgataaggaaaaatcagtgttctttgcatattcaattagagaagagcatgaatactgttgttactctaggaagaatgcttatattatgaaaggagcgctaacattgcgttgagaaaacaacaggtgatgttatctttttctgatttccttatattgcagtctgttagcaaggagcatcaagagttcctcggccttgtcgacaaagaggtataatgtgaacttgtaaattgatattagagtgacaattattcatgcagttatcttccatttttattgcaaatacttgggagggctcaataactcttggtctttgttgaatgcagattgaattatattatatactaatggaattccgccggcggtgtgaggcccactcagagtaggatttggagggtgcagaactgtttttgcattgccaatgaaaggaggaagaccgcctcaaagagccttgtccccatccaccaacatggtcatgataatcgttgacatcgaccaagatctctccagggtaagtagaacagcactaaaattaggattagcatttctagacaccatgttatttcagaaattgattagttggaatcttgtattcattttgctagcctgagtgcctaacttagtggaaatatattggaaaagtttctccatggcagattgaggctgttatttcctgtagatttaggtttcgctgtaaatactgaacaattattgcaattttctatttgtattgagtacttgggtggttctttctatcaaccaaatcaatttttattcatcagtgtagactctttgaactgcaattgttgtgctgctgatatgtgttatgtaggctgcagcagaaggtcaattttcccttttgtgaggtgccataattttgaaaatatgttaattttgtcaattgcttgatattaagtggagtatctcctttgtatgcaccaaccaattttggagctccagacaatgaaacgatagcttcataatatccatgaaaaagtgctattggatgaatccagtaaagatgtgttttctctggcattttgaatattgaagtgtgctgatgactttgtaattactaataatgatgcaatgcataaattctatggccggttctgttacTtctttttatttggacgtaatttgcttgaaagatttttgatgtggctaaaggagaaatttttttaaggcatttggtttctcaggagtttaggagttggaaccatgcaaacatgcctcatgctaatgtcttcctgagctttcagaaatcgaagttatttctagcttaagatgatgttggagctgatcctggtgctgttagagaggccaatctattcaggtccagcagtttacatcaagatgatgttctttctagcgatgcatgtagtgaccattgatgtttcgattgcttgaggcgaccctctttgtaattgtgaaaaatgtggtgttatgaaacaaaaatatagatttacatccaggagataaaattattttattctgtattttagagt
More
|
||||||||||
| CDS seq | atcgagcgccgcctcgcgcaggggttcaccggcctgctgcaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccggggtgcccgggccgggaaggagttcttcctcgccgcggccgtcgcctccatcatcgacatcggcaggaggccaccggcgccagggagcttaaagattgaatttgaatccatctgccctggcttgaagtacaatccaaatattatggtatatcaacagcagcttcagtctgggacagagcaatacaaggtcctcccttctgttagcaaggagcatcaagagttcctcggccttgtcgacaaagagattgaattatattatatactaatggaattccgccggcggtgtgaggcccactcagagtag
More
|
||||||||||
| Protein seq | IERRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFLAAAVASIIDIGRRPPAPGSLKIEFESICPGLKYNPNIMVYQQQLQSGTEQYKVLPSVSKEHQEFLGLVDKEIELYYILMEFRRRCEAHSE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0010130 | OsLima_05g0010130.01 | Chr05 | 12388055 | 12392537 | + | NAM | ||
| CDS seq | atcgagcgccgcctcgcgcaggggttcaccggcctgctgcaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccggggtgcccgggccgggaaggagttcttcctcgccgcggccgtcgcctccatcatcgacatcggcaggaggccaccggcgccagggagcttaaagattgaatttgaatccatctgccctggcttgaagtacaatccaaatattatggtatatcaacagcagcttcagtctgggacagagcaatacaaggtcctcccttctgttagcaaggagcatcaagagttcctcggccttgtcgacaaagagattgaattatattatatactaatggaattccgccggcggtgtgaggcccactcagagtag
More
|
|||||||
| Protein seq | IERRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFLAAAVASIIDIGRRPPAPGSLKIEFESICPGLKYNPNIMVYQQQLQSGTEQYKVLPSVSKEHQEFLGLVDKEIELYYILMEFRRRCEAHSE |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0010130 | OsLima_05g0010130.02 | Chr05 | 12388055 | 12392537 | + | NAM | ||
| CDS seq | atcgagcgccgcctcgcgcaggggttcaccggcctgctgcaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccggggtgcccgggccgggaaggagttcttcctcgccgcggccgtcgcctccatcatcgacatcggcaggaggccaccggcgccagggagcttaaagattgaatttgaatccatctgccctggcttgaagtacaatccaaatattatggtatatcaacagcagcttcagtctgggacagagcaatacaaggtcctcccttctgttagcaaggagcatcaagagttcctcggccttgtcgacaaagagattgaattatattatatactaatggaattccgccggcggtgtgaggcccactcagagtag
More
|
|||||||
| Protein seq | IERRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFLAAAVASIIDIGRRPPAPGSLKIEFESICPGLKYNPNIMVYQQQLQSGTEQYKVLPSVSKEHQEFLGLVDKEIELYYILMEFRRRCEAHSE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 12391356 | 12392537 | + | OsLima_05g0010130.01 | OsLima_05g0010130.01,OsLima_05g0010130.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.052810 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0530300 | SBH | 7.572769 | 6.149427 | 7.564250 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0530300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010180 | RBH | 0.096057 | 3.794307 | 3.242020 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010230 | RBH | 0.142479 | 1.203807 | 1.625638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0010140 | RBH | 0.083793 | 0.890493 | 4.146429 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010230 | RBH | 0.000000 | 0.034136 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0010310 | RBH | 2.010923 | 2.571162 | 3.547650 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0181700 | RBH | 0.9794665 | 3.5982825 | 4.3012315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0010160 | RBH | 0.000000 | 0.345753 | 1.003557 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0187300 | RBH | 0.112616 | 0.3176105 | 0.3098315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010070 | RBH | 0.315770 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010180 | RBH | 1.360910 | 9.101255 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010220 | RBH | 0.106301 | 0.735688 | 0.583782 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010210 | RBH | 0.0 | 2.319721 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009890 | RBH | 0.0 | 0.000000 | 0.369669 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010210 | RBH | 0.505163 | 3.113931 | 8.618651 |
