Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0006610 | OGI:05017140 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:6323797-6333582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacatgcaaatcagtccagatcatttgaaggtgagaggagagtgaactatacacgtgtatgtacaacaaagagagaacaaatgacagtttagataaaaggaaaccagaagctacagttcagtaaatcctgtttctttttctctgtttttcttcacccctttgtgtggctatgtaaagtcgaccagtctctgttcgaagtttcccaccagtttggtgaaagagttgaaaggctaaaagcaacagcatgtagatcaacaaacatgtgtaaatacttgctgaatcagtgctttcttcgagtatttcgagcatgtggctaacttgatgtgatttgtgaagtttcctctgatgtccttgccgccgttcatccattggtgatacagtgactgaacacaaagctaccaagatcagaaatattagaggggctgggaaagcaggtacatatcagattagcaccaaatcAacaggatcgcagaatcagatataaatgagtagaatagaacagaattgcataggaatttggagatgaataactagtgacgaaatgtactgtgcttagcttcatgcaatctgaaattaaccaaacagaattacacataagtgatggactgcaagagtgaatgataatagattcaccagtcactagatgcatgcattgcagatttaatttacagatgagaactccgaactttggagctcaaaaagaaaaaaagaactccaaactctaagcactatagggggttcacaaacacgaaaaagccaaaacagagaaataacaggaccgcagactcgagttagctttgtacaattttgtcgcctacctccagattaaatataaatttaaactatatgcacgacttctaaacatggtacaactcgctaacttacaacatggcgactttagcaatctatggacaagggggtacaacaacaggacagcacagtatacattatgcaacttccaggctggggcacctatacagaacacacgcaggaggcttggccatctatcaattcagttaactataggtaagcaattaaaaatatcattgcccttcaaaattcgcattctaaatcatatctccagcggttgatatgaataaactctacaaagaagcagccaaacagaatgtggacctcatgacaccgttcttccatagcaaatggaagctaggtaaagattcttcgaccatttctcctgcagatatattaaatcattatagttgcacaagtatggctgttcagtagaatttagacagaaaatcaaattaccttcacatgctggctggggaaagcagatgtcctcagggtttcctgtgtttcatcagcaggctttcttctgggaatgctcaagataaatgccgcctggtcccatgtagctgctgttgcagttatgcgaaaaccattgtcccaacgccgatgtattccctcacttggatacaggaagtcaagctccacaacctacaaaagaaaattgtgttgtcaaccgaaggaactgaatttctacccctattgtatatcatatcactgttgaacctaagctatcctattgaagattcagaaagggaaagcacatacatgtgtatacatgttttaggttagtaaaaggcctgattagaaagacagaaatacctgatctgtaaagccagcattccgggacatgaccactgcccaccggcttcctgcagtggccatagcagtgacatagaaaccctccttccacttcttgtttatccacttgaagggaaatgagtcgcttactttgtaggattgttgggcatattgcgtccctgctcaaaatcagttacaatctataaggacatgctagtgtaataacaacaggggaacgtatcctgtgcacacaaactttccatgtacacaccaactaataaatttcaccaaaaaatctagaaaaaaatgtatatgtacttcgaatagcattacacttatgtgtaaaggcctggtttagttccccaaatttttttcccaaaaacatcacatcaaatctttggacacatgcatggagcattaaatatagattaaaaaaaactaattgcacagttaggggggaaatcgcaggacaaatcttttgagcctaattagtccatgattaaccataagtgctacagtaacccacatgtgctaatgacggattaattaggctcaaaagattcgtctcgcggtttccaggcgagttatgaaattaattttttcattcgtgtccgaaaactccttccgacatccggttaaacatccgatgtgacacccaaaaattttcttttcgcaaactaaacaggccataatcttaatctcaaattcattatattttagctgtaacaaaaaagatacagtttctgacagttttaagggaataaatcggcaagaattttttcttttttgttgctccatatatagaacgaatttttgtaaaactcaaagtacatgtacaactttttgtaaaaatttttggtgaagtttgttagttggtgtgcacggtgtttacacaagaaggcttgtgtgcataggatatttttctaaaatatattcagtttccagagcctcaatttttatgcttgcaacgtgctgctaaaatatccttgaaatttgcatgtccaggcaagattaatctagtctaataaaccacacaacatacttgaaacaaaagagtcccactaacatctgtcaatgtcctattgatgttagaaaatagataatgccatacaatataggaaaagctccaagattactgagaaaccacagaaccacaaagccaggacataaaatgataggaatcctggtacttggcatgcaagagtgcatgtcttattattgagagcaggaatcaatgatatacctcttgacatgaccaccagagaactgccattgtttgcacctgctaatgaagtgatatagaagttTCtctcccactgatccattatccattcctaagagcatcataggcgagcatatcaaaacaattggaacatagcagtgtgaaaccatgtaaatcacacttagctattattgagagtgtaagctgtaatattgatagccaccgatggatgagaaggataggagcatgcaggaaacaaagagtactactataataattttaattactcaccttgtgaagaaaatgttgagaaagctcatatacttgagaagtaaatccagtgccagcatccattattaaagcccacagatttgaacaagaagccactgaactaataaacaacccatcttcatttccttttgtaatatgctgtgctaaccgaccatctgcaacattgtagtgatacctgcagaagaagtgtggtcagattgaaattctctttccaactatagtggtcgatgcaacagttcacacctttgcttcataggccgtctggcattataaacactaatccattgagttgcaggcatgcccattctaatcttcttttttggctgctcatcatcatcttcgtccatcgttaggcgacctcttttttgaccaacctgatatataagctggcagaagttcaacaaacacttagtctattagctaacatcaacacaaacgaaatattattatacaaataatgttctccccaaagctcttgccacaaaagcaatgtctaggaccaatctaaaatttagcatttacatgacttttagaattcggacacagctacaagcctattaacacctgtgaattatgagaaacaagaaagttggtaagcaatgcagtaccttctgagcaccatcagtgttgattggccttatgtctgggtttggaccaacaatgccatcAaaaagagaaatgcactttgcatagtttggttcttcatcaaactttaagttcactacatactcaataaattgccggaaaggttgtggacagaagcagcacaaagattctggagaggtcgccatttttttcttgcaaacaaggaaacctttattctctccctaaaatatatcaacacaaaggtaactaaggacaaaaggttgcaaaacgaacagataaaaaaagattcgcactgcaaacaaacttcacctggtatccttgccaaggaaggcgaccccgtaaaagaaaaacaagtgtataggcaagggattcaagatcatctcttctgcttccagttcttcctaagtgagcatgcacactagcatagcgaacagttccccttttcaggtaatcagtatgacaagtcagtttattagtaacacaagaaaatcgagggctttaggacttagttttcaataaagtatctccctcacaaacctaaagatatcaggcctctgatcatactcaacatgctcccccgaaccagtgtctttccacctagtagctgtgatgagaataaatattgagtacaaaaacagtataatgaggttcttgtgaaatgaaacagaagtacctaatccaaggtcaacaagaaaaagttttttctcttccagggttcctggggttccaagcaaaaaattctcaggttttacatcaccatgaacatacctaacataaataagagttagctatatttcaaaatgcaacatgcaaaaaactattaggcttcactgccaagagaggatcagagaaaaaaacaaataccctttcgaatgcatcttctccaatatggagattgcttctatagcaatacaagcaaccatttcaacagacattctgtaatagaaagaaaaatatcatattaactgagctaattaaacatgaacattcaagaatatattgacgaacaactagaaaacttacgagtgggaattattattccaaacatcccacaggcttggacccaacatgtccataatctgcatataagttggtttgcatcagagaacttcatgttttctaggtaatgaagaaccaatccatttaattttgctctgttcatgattaattatgaatcaatgtgataaaggaaaacagaaatatcttggcttgcgattactaaaagttgaagatccacagagtcaggctttcatgcctactttggcaaagtatagttaagagtgcctttctaaatgaatggtctgacacacactataaacaaagttctatcttaaaagtgtaatgatctgagaatacatattttacaagattataggaaaacatttttactccacatctcatatcaaaactttgaggggaagtaaaaaagaagttttccctagtttctataaaatacatgaacaattttatttcttttgttggcagatttagtgcagccttagcaggatctttcttcaaaggctattggatgtgaggcacgaagacaaactacacaacattggaaaggtatcgttgcagcatcgagcatatggtcaaaagaatagagaaacagactggacactggaaatagcgaattgagaaggtagtggtttcttgcttcgcgaaataatacataggactccatatacagagtgctaatatatcttgccatcgaagacaaggacggcttgttaaccgaaaacttaactagacttgcctaaaatggatttccctagccgactagaactaaagttcctaatgccttgcaccttcttctgtcatgcaaaaagaagttgctgatgctgtccttgagctccaacataccttctgtagttcatccacaataggaattcagaacataattttaagattgtgcgcaatctactgctcaatctaaatttatctattgtctctgtgcacaaaggcactggttgcaatgttattagaccatcaatttatcactaactaatgtttgatagacacatgggaattccagagaactgaaaggatatttgtgatgtttggcgtttacagatgattgagtgaagaaaaatatgttagataacgagattttccatcatacatcagggtgtaaaaggagcaggtatttcttgcctctgcctgcccaggaattgtggagcagatagaatggagaaatggtaatttggcattatccatatccaatttggaatcagagaaaatttaggatatgatatgttgatatatgattagggctatccactgacatacatccgaatgcaagtgttgtgataaacctatctgatttcacttaagattaccaacattaattgctatcgttttgacatcttacaatcttagttatcagtctacccatgctcacgctgaatgtacccatattgtccatggtctcatgtaaggattaaaggatgcaaacatagtctgtccgaccaactgactgacagaatgcagagtggatacgggatagagaaatggttatccggtactatctgattgcgactaataaagaaacatgggggaaggatgcgggagttgtcatctcagtttgcaccctctccaattccatcctacatacgaattgtccattgcaagctacaactccattttgtgtcggtcaccagcaacaagattgtggaaaaatttgacaatttgttgatgatgttttgaattgattcaaagtaaagattcaatgttgcagcagtaatcactcgaacaaccaaataaaagataattcttctaagtacataaaactattctgctgtatgattacttctactaagcagcagaactttgtttatcgtatgcttacatcatatgcagagcacctttcatcaatggtctcaaacttttaactgataataactgccattaatgttttttcatattattggacattacctgctaatgttactaatgccagattgcccttgccagttttaatgattgagtgagctagtgctatccctccctccaaatgacttctacacagtatacactgctatttactactccctcctacccaaattgatcatcatatagtggaatctgaaatttctcaaactgatcatcatataaccgcatggacaccggtttcatcggaatacaattaatgcagcatgggatagtgtgtgcatgctagggtgtaattggcatggtcttttaatcgatgcatgcattgtgggagaatgtgtgcatggtgtcttgattgatgtgatttaaattatccttggtcttggtgcataaacatatatgatgatcaatttgggatggagggagtatataaCacataaagtggggccaagagtatatgctccgttaccatgatatagtaatccccctgcctccctttataatgtactcttggtacaccatgaatgccgcttagagtgctgccaaatggatgtttacagaaagaaaatgttagtatgcattctagaatgccagctgccatcaaaatgtgtacagaatagcaaggcggacaaaggttgtgctgaataaaaaaacagttgatcatgccagaaaaaatggacaaaatgtcacttacttgtaaacttgccactcatagggagctccataattgcagcctttgctggttcgatgttcaaattttattgccacctggtataaagaaaagcgtgaatataaatgcaactatgatattttaaatatggaaatgaaaaagacatccggattagaagagctgacctccaaagcatttgctccaggtgtcctgtcggtaacaccaggagaggaaatacgccgaccaacatatacttgcccaaatcctccctttcccagctttctatcaagtttgtaagtaggtgaattggcaacttggacctgttcaaataaatcaaaaaagaatttgggtcaccctcagaaaatcacccaacacaccatttaaggtacccaggctatcctattccgctgttttgaagtcagatagtcctataactgcagtaactgaaacgagatgcatgtacctacaagagaattgagtataggcatctataagtgtacatggctatatgcaaaatgagaatggtttggaattttgtatgaaagaaaaaggtcagcttgtgtttttttgtaatgataaaaattaggcctccaatgtatattatgccacagaacttaatcactatataaaatgcaaacaagaaaagggagacaaacagctaagtgctagcaattaataggggcatcaaatgcaaaagatttgaaatatatagttatcttgagcagcaggtaaacatactcatctatgaaaactaacatcaaacttcagtgactgggctattacctaatagaattgctgtatacattagcagctttctgtagattaaaatgggaggcctaatgtggacatcctattatattacttaatcattgctatgcagtatacagtaatattgtgtggatggaacaagcccaaggtgcaactcacccaattctctcaattccattatatataacaggtcaactaaatgttctcccctttcatcacacatccacatggaatttaaccattctatgtactactatactttagacaagatcatgaaacacacaacatagggaacttgggggtgtcctaagtatcaacaaaaagatcacacaagttagaaaacaacattgctgcgtcactgatatgcaggtccagaccccatatgtcatcctcatatgtatattttaatctatacatgtttatagtatagctgaacaacttttcgctatacttggtagctcaaacagtcatgttattcaaatttcaatctgaaatgttaaacagcatggtactataaaatatgaaaaccatacacttctttgactgttgttcagtatgccactttcaatcgaggccactagatcaaacccattaaaacatcaatcatcagatcatacatactcgagagatgctttgattagacacctagttgaaagggtggaagtacaaatactaaagaagtaaataatataaatgcatgctattttgcacaaaaagtggcacgcacattgcaaatggcaaaccagaaccagaacaagaactatataaggtttcatgttgctcgtctataagaaaagcgcttgccgccctaaaataataaatacttgcacaacatatctcaaccaacctaatctattcactagtcactacatataaacacctcctttcagaatattgcaaaacacagtaatgtagccctttttgcataagtaactactacattaaaacattcgaactcgtgcgcctatttgtcagataaggaaacacaattttttttctaatccccaacaccacaagacaagagcatgaaatctgcgcacaacatttcatactcataactcatccataacaccaaataacctctcgaatcctactgttccacaggtgattatccacactatcccatacctaacaccaattttcatccatcctcgcgcttctagcatgcaaattcaccccccaaggccccaacccctatgcactacggccaagcggcctcacaccctcatcgcttccccccaagcacgaattgcgagtccaatcgcgggtgcccaaaccctaaacgcagtgcccaatttcgaacccacactactcgtggcaaaggcaacaaagggaggagaggagatcgatcctcaccgtctcggggagcggcgtggagctcccgtcgtcgcccggcgcctcgccggccttgtccccgctcccgacgacgctgtcgacgtcgtccattaccacttccccccccccccgctctccagtcccacgaacgcggctcggaatctccgtcaccgggaaccgccgcgtcgagagccggggctcgccggcgtggtgtgtgcgtggatgccgccgcttctacgagggcctccacccggcgtgggggtggattggtctagggtttggagcggaggcggcggcggcggcgaggcggaggcgaggtggtcggcgacggagaagggaagaagaagaagaaataaaaggcgagagaaaagcagaaaggagaggagaggagaagcga
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| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgaggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggatttgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggaggtggcaataaaatttgaacatcgaaccagcaaaggctgcaattatggagctccctatgagtggcaagtttacaacgtgagcatgggtagactgataactaagattattatggacatgttgggtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtattgctatagaagcaatctccatattggagaagatgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcgggggagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctcttttTgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggatttacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagaGAaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttcccttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaagctttgtgttcagtcactgtatcaccaatggatgaacggcggcaaggacatcagaggaaacttcacaaatcacatcaagttagccacatgctcgaaatactcgaagaaagcactgattcagcaagtatttacacatgtttgttga
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| Protein seq | MDDVDSVVGSGDKAGEAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEVAIKFEHRTSKGCNYGAPYEWQVYNVSMGRLITKIIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKLCVQSLYHQWMNGGKDIRGNFTNHIKLATCSKYSKKALIQQVFTHVC |
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| Function | Casein kinase 1-like protein HD16 [UniProtKB/Swiss-Prot:Q852L0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006610 | OsLima_05g0006610.02 | Chr05 | 6323797 | 6333557 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgaggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggatttgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggaggtggcaataaaatttgaacatcgaaccagcaaaggctgcaattatggagctccctatgagtggcaagtttacaacgtgagcatgggtagactgataactaagattattatggacatgttgggtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtattgctatagaagcaatctccatattggagaagatgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcgggggagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctcttttTgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggatttacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagaGAaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttcccttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaagctttgtgttcagtcactgtatcaccaatggatgaacggcggcaaggacatcagaggaaacttcacaaatcacatcaagttagccacatgctcgaaatactcgaagaaagcactgattcagcaagtatttacacatgtttgttga
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| Protein seq | MDDVDSVVGSGDKAGEAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEVAIKFEHRTSKGCNYGAPYEWQVYNVSMGRLITKIIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKLCVQSLYHQWMNGGKDIRGNFTNHIKLATCSKYSKKALIQQVFTHVC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006610 | OsLima_05g0006610.01 | Chr05 | 6324330 | 6333582 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgaggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggatttgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggaggtggcaataaaatttgaacatcgaaccagcaaaggctgcaattatggagctccctatgagtggcaagtttacaacgtgagcatgggtagactgataactaagattattatggacatgttgggtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtattgctatagaagcaatctccatattggagaagatgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcgggggagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctcttttTgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggatttacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagaGAaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttcccttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaaggagaaatggtcgaagaatctttacctagcttccatttgctatggaagaacggtgtcatga
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| Protein seq | MDDVDSVVGSGDKAGEAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEVAIKFEHRTSKGCNYGAPYEWQVYNVSMGRLITKIIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKEKWSKNLYLASICYGRTVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006610 | OsLima_05g0006610.03 | Chr05 | 6323829 | 6333557 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgaggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggatttgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggaggtggcaataaaatttgaacatcgaaccagcaaaggctgcaattatggagctccctatgagtggcaagtttacaacgtgagcatgggtagactgataactaagattattatggacatgttgggtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtattgctatagaagcaatctccatattggagaagatgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcgggggagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctcttttTgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggatttacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagaGAaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttcccttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaaggagaaatggtcgaagaatctttacctagcttccatttgctatggaagaacggtgtcatga
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| Protein seq | MDDVDSVVGSGDKAGEAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEVAIKFEHRTSKGCNYGAPYEWQVYNVSMGRLITKIIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKEKWSKNLYLASICYGRTVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006610 | OsLima_05g0006610.04 | Chr05 | 6324329 | 6333579 | - | IsoSeq | ||
| CDS seq | atggataatggatcagtgggagaGAaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttcccttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtgga
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| Protein seq | MDNGSVGEKLLYHFISRCKQWQFSGGHVKRDAICPTILQSKRLISLQVDKQEVEGGFLCHCYGHCRKPVGSGHVPECWLYRSGCG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr05 | 6323797 | 6325066 | - | OsLima_05g0006610.02 | OsLima_05g0006610.04,OsLima_05g0006610.02 | All |
| AL | Chr05 | 6323797 | 6325066 | - | OsLima_05g0006610.02 | OsLima_05g0006610.01,OsLima_05g0006610.02 | All |
| MX | Chr05 | 6328602 | 6331107 | - | OsLima_05g0006610.02,OsLima_05g0006610.03,OsLima_05g0006610.01 | OsLima_05g0006610.01,OsLima_05g0006610.04,OsLima_05g0006610.03,OsLima_05g0006610.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.291114 | 0.223224 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0200500 | RBH | 2.591762 | 2.096377 | 6.352777 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11140 | RBH | 1.564979 | 1.481358 | 1.316581 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0200500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006610 | RBH | 0.535162 | 9.462626 | 7.128954 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006670 | RBH | 0.658863 | 5.138743 | 3.561349 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006550 | RBH | 1.449194 | 9.419225 | 12.627111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006620 | RBH | 0.250002 | 0.231265 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006720 | RBH | 10.970388 | 12.340611 | 20.035318 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0517000 | SBH | 16.3303635 | 54.3183535 | 66.148804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006540 | RBH | 0.345254 | 0.060255 | 1.992681 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0092400 | RBH | 14.463429 | 23.3403425 | 16.6159145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006660 | RBH | 1.084440 | 0.900186 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006550 | RBH | 0.876601 | 16.749435 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006630 | RBH | 5.993112 | 14.626306 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006710 | RBH | 0.587193 | 1.228991 | 1.374216 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006680 | RBH | 0.244091 | 7.014049 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006440 | RBH | 0.604470 | 1.500323 | 3.171739 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006680 | RBH | 1.688929 | 15.512858 | 8.059267 |
