Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0006670 | OGI:05017140 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:6135231-6145009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacatgcaatcagtccagatcatttgaaggtgagaggagagtgaactatacacgtgtatgtacaacaaagagagaacaaatgacagtttagataaaaggaaaccagaagctacagttcagtaaatcctgtttctttttctctgtttttcttcacccctttgtgtggctatgtaaagtcgaccagtctctgttcgaagtttcccaccagtggtgaaagagttgaaaggctaaaagcaacagcatgtagatcaacaaacatgtgtaaatacttgctgaatcagtgctttcttcgagtatttcgagcatgtggttaacttgatgtgatttgtgaagtttcctctgatgtccttgccgccgttcatccattggtgatacagtgactgaacacaaagctaccaagatcagaaatatcagaggggctgggaaagcaggtacatatcagattagcaccaaatcaacaggatcgcagaatcagatataaatgagtagaatagaacagaattgcataggaatttggagatgaataactagtgacgaaatgtactgtgcttagcttcatgcaatctgaaattaaccaaacagaattacacataagtgatggactgcaagagtgaatgataatagattcaccagtcactagatgcatgcattgcagatttaatttacagatgagaactccgaacttcggagctcaaaaagaaaaaaagaactccaaactctaagcactatagggggttcacaaacacgaaaaagccaaaacagagaaataacaggaccgcagactcgagttagctttgtacaattttgtcgcctacctccaggttaaatataaatttaaactatatgcacgacttctaaacatggtacaactcgctaacttacaacattgcgactttagcaatctatggacaaggggtacaacaacaggacagcacagtatacattatgcaacttccaggctggggcacctatacagaacacacgcaggaggcttggccatctatcaattcagttaactataggtaagcaattaaaaatatcattgcccttcaaaattcgccttctaaatcatatctccagcggttgatatgaataaactctacaaagaagcagccaaacagaatgtggacctcatgacaccgttcttccatagcaaatggaagctaggtaaagattcttcgaccatttctcctgcagatatattaaatcattatagttgcacaagtatggctgttcagtagaatttagacagaaaatcaaattaccttcacatgctggctggggaaagcagatgtcctcagggtttcctgtgtttcatcagcaggctttcttctgggaatgctcaagataaatgccgcctggtcccatgtagctgctgttgcagttatgcgaaaaccattgtcccaacgccgatgtattccctcacttggatacaggaagtcaagctccacaacctacaaaagaaaattgtgttgtcaaccgaaggaactgaatttctacccctattgtatatcatatcactgttgaacctaagctatcctattgaagattcagaaagggaaagcacatacatgtgtatacatgttttaggttagtaaaaggcctgattagaaagacagaaatacctgatctgtaaagccagcattccgggacatgaccactgcccaccggcttcctgcagtggccatagcagtgacatagaaaccctccttccacttcttgtttatccacttgaaGggaaatgagtcgcttactttgtaggattgttgggcatattgcgtccctgctcaaaatcagttacaatctataaggacatgctagtgtaataacaacaggggaacgtatcctgtgcacacaaactttccatgtacacaccaactaataaatttcaccaaaaaatctagaaaaaaatgtatatgtacttcgaatagcattacacttatgtgtaaaggcctggtttagttccccaaatttttttcccaaaaacatcacatcaaatctttggacacatgcatggagcattaaatatagattAaaaaaactaattgcacagttaggggggaaatcgcaggacaaatcttttgagcctaattagtccatgattaaccataaGTgctacagtaacccacatgtgctaatgacggattaattaggctcaaaagattcgtctcacggtttccaggcgagttatgaaattagttttttcattcgtgtccgaaaactccttccgacatccggttaaacatccgatgtgacacccaaaaattttcttttcgcgaactaaacaggccataatcttaatctcaaattcattatattttagctgtaacaaaaaagatacagtttctgacagttttaagggaataaatcggcaagaattttgtcttttttgttgctccatatatagaacgaatttttgtaaaactcaaagtacatgtacaactttttgtaaaaatttttggtgaagtttgttagttggtgtgcacggtgtttacacaagaaggcttgtgtgcataggatatttttctaaaatatAttcagtttccagagcctcaatttttatgcttgcaacgtgctgctaaaatatccttgaaatttgcatgtccaggcaagattaatctagtctaataaaccacacaacatacttgaaacaaaagagtcccactaacatctgtcaatgtcctattgatgttagaaaatagataatgccatacaatataggaaaagctccaagattactgagaaaccacagaaccacaaagccaggacataaaatgataggaatcctggtacttggcatgcaagagtgcatgtcttattattgagagcaggaatcaatgatatacctcttgacatgaccaccagagaactgccattgtttgcacctgctaatgaagtgatatagaagtttctctcccactgatccattatccattcctaagagcatcataggcgagcatatcaaaacaattggaacatagcagtgtgaaaccatgtaaatcacacttagctattattgagagtgtaagctgtaatattgatagccaccgatggatgagaaggataggagcatgcaggaaacaaagagtactactataataattttaattactcaccttgtgaagaaaatgttgagaaagctcatatacttgagaagtAaatccagtgccagcatccattattaaagcccacagatttgaacaagaagccactgaactaataaacaacccatcttcatttccttttgtaatatgctgtgctaaccgaccatctgcaacattgtagtgatacctgcagaagaagtgtggtcagattgaaattctctttccaactatagtggtcgatgcaacagttcacacctttgcttcataggccgtctggcattataaacactaatccattgagttgcaggcatgcccattctaatcttcttttttggctgctcatcatcatcttcgtccatcgttaggcgacctcttttttgaccaacctgatatataagctggcagaagttcaacaaacacttagtctattagctaacatcaacacaaacgaaatattattatacaaataatgttctccccaaagctcttgccacaaaagcaatgtctaggaccaatctaaaatttagcatttacatgacttttagaattcggacacagctacaagcctattaacacctgtgaattatgagaaacaagaaagttggtaagcaatgcagtaccttctgagcaccatcagtgttgattggccttatgtctgggtttggaccaacaatgccatcaaaaagagaaatgcactttgcatagtttggttcttcatcaaactttaagttcactacatactcaataaattgccggaaaggttgtggacagaagcagcacaaagattctggagaggtcgccatttttttcttgcaaacaaggaaacctttattctctccctaaaatatatcaacacaaaggtaactgaggacaaaaggttgcaaaacgaacagataaaaaaagattcgcactgcaaacaaacttcacctggtatccttgccaaggaaggcgaccccgtaaaagaaaaacaagtgtataggcaagggattcaagatcatctcttctgcttccagttcttcctaagtgagcatgcacactagcatagcgaacagttccccttttcaggtaatcagtatgacaagtcagtttattagtaacacaagaaaatcgagggctttaggacttagttttcaataaagtatctccctcacaaacctaaagatatcaggcctctgatcatactcaacatgctCccccgaaccagtgtctttccacctagtagctgtgatgagaataaatattgagtacaaaaacagtataatgaggttcttgtgaaatgaaacagaagtacctaatccaaggtcaacaagaaaaagttttttctcttccagggttcctggggttccaagcaaaaaattctcaggttttacatcaccatgaacatacctaacataaataagagttagctatatttcaaaatgcaacatgcaaaaaactattaggcttcactgccaagagaggatcagagAaaaaaacaaataccctttcgaatgcaTCTtctccaatatggagattgcttctatagcaATacaagcaaccatttcaacagacattctgtaatagaaagaaaaatatcatattaattgagctaattaaacatgaacattcaagaatatattgacgaacaactagaaaacttacgagtgggaattattattccaaacatcccacaggcttggaCccaacatgtccataatctgcatataagttggtttgcatcagagaacttcatgttttctaggtaatgaagaaccaatccatttaattttgctctgttcatgattaattatgaatcaatgtgataaaggaaaacagaaatatcttggcttgcgattactaaaagttgaagatccacagagtcaggctttcatgcctactttggcaaagtatagttaagagtgcctttctaaatgaatggtctgacacacactataaacaaagttctatcttaaaagtgtaatgatctgagaatacatattttacaagattataggaaaacatttttactccacatctcatatcaaaactttgaggggaagtaaaaaagaagttttccctagtttctatAAaatacatgaacaattttatttcttttgttggcagatttagtgcagccttagcaggatctttcttcaaaggctattggatgtgaggcacgaagacaaactacacaacattggaaaggtatcgttgcagcatcgagcatatggtcaaaagaatagagaaacagactggacactggaaatagcgaattgagaaggtagtggtttcttgcttcgcgaaataatacataggactccatatacagagtgctaatatatcttgccatcgaagacaaggatggcttgttaaccgaaaacttaactagacttgcctaaaatggatttccctagccgactagaactaaagttcctaatgccttgcaccttcttctgtcatgcaaaaagaagttgctgatgctgtccttgagctccaacataccttctgtagttcatccacaataggaattcagaacataattttaagattgtgcgcaatctactgctcaatctaaatttatctattgtctctgtgcacaaaggcactggttgcaatgttattagaccatcaatttatcactaactaatgtttgatagacacatgggaattccagagaactgaaaggatatttgtgatgtttggcgtttacagatgattgagtgaagaaaaatatgttagataacgagattttccatcatacatcagggtgtaaaaggagcaggtatttcttgcctctgcctgcccaggaattgtggagcagatagaatggagaaatggtaatttggcattatccatatccaatttggaatcagagaaaatttaggatatgatatgttgatatatgattagggctatccactgacatacatccgaatgcaagtgttgtgataaacctatctgctttcacttaagattaccaacattaattgctatcgttttgacatcttacaatcttagttatcagtctacccatgctcacgctgaatgtacccatattgtccatggtctcatgtaaggattaaaggatgcaaacatagtctgtccgaccaactgactgacagaatgcagagtggatacgggatagagaaatggttatccggtactatctgattgcgactaataaagaaacatGggggaaggatgcgggagttgtcatctcagtttgcaccctctccaattccatcctacatacgaattgtccattgcaagctacaactccattttgtgtcggtcaccagcaacaagattgtggaaaaatttgacaatttgttgatgatgttttgaattgattcaaagtaaagattcaatgttgcagcagtaatcactcgaacaaccaaataaaagataattcttctaagtacataaaactattctgctgtatgattatttctactaagcagcagaactttgtttatcgtatgcttacatcatatgcagagcacctttcatcaatggtctcaaacttttaactgataataactgccattaatgttttttcatattattggacattacctgctaatgttactaatgccagattgcccttgccagttttaatgattgagtgagctagtgctatccctccctccaaatgacttctacacagtatacactgctatttactactccctcctacccaaattgatcatcatatagtggaatctgaaatttctcaaactgatcatcatataaccgcatggacaccggtttcatcggaatacaattaatgcagcatgggatagtgtgtgcatgctagggtgtaattggcatggtcttttaatcgatgcatgcattgtgggagaatgtgtgcatggtgtcttgattgaTGtgatttaaattatccttgatcttggtgcataaacatatatgatgatcaatttgggatggagggagtatataacacataaagtggggcaaagagtatatgctccgttaccatgatataataatccccctgcctccctttataatgtactcttggtacaccatgaatgccgcttagagtgctgccaaatggatgtttacagaaagAaaatgttagtatgcattctagaatgccagctgccatcaaaatgtgtacagaatagcaaggcggacaaaggttgtgctgaataaaaaaacagttgatcatgccagaaaaaatggacaaaatgtcaattacttgtaaacttgccactcatagggagctccataattgcagcctttgctggttcgatgttcaaattttattgccacctggtataaagaaaagcgtgaatataaatgcaactatgatattttaaatatggaaatgaaaaagacatccggattAGAaGagctgacctccaaagcatttgctccaggtgtcctgtcggtaacaccaggagaggaaatacgccgaccaacatatacttgcccAaatcctccctttcccagctttctatcaagtttgtaagtaggtgaattggcaacttggacctgttcaaataaatcaaaaaagaatttgggtcaccctcagaaaatcacccaacacaccatttaaggtacccaggctatcctattccgctgttttgaagtcagatagtcctataactgcagtaactgaaacgagatgcatgtacctacaagagaattgagtataggcatctataagtgtacatggctatatgcaaaatgagaatggtttggaattttgtatgaaagaaaaaggtcagcttgtgtttttttgtaatgataaaaattaggcctccaatgtatattatgccacagaacttaatcactatatAaaatgcaaacaagaaaagggagacaaacagctaagtgctagcaattaataggggcatcaaatgcaaaagatttgaaatatatagttatcttgagcagcaggtaaacatactcatctatgaaaactaacatcaaacttcagtgactgggctattacctaatagaattgctgtatacattagcagctttctgtagattaaaatgggaggcctaatgtggacatcctattatattacttaatcattgctatgcagtatacagtaatattgtgtggatggaacaagcccaaggtgcaactcacccaattctctcaattccattatatataacaggtcaactaaatgttctcccctttcatcacacatccacatggaatttaaccattctatgtactactatactttagacaagatcatgaaacacacaacatagggaacttgggggtgtcctaagtatcaacaaaaagatcacacaagttagaaaacaacattgctgcgtcactgatatgcaggtccagaccccatatgtcatcctcatatgtatattttaatctatacatgttTAtagtatagctgaacaacttttcgctatacttggtagctcAaacagtcatgttattcaaatttcaatctgaaatgttaaacagcatggtactataaaatatgaaaaccatacacttctttgactgttgttaatgccactttcaatcgaggccactagatcaaacccattaaaacatcaatcatcagatcatacatactcgagagatgctttgattagacacctagtGAAAGGGTGGAAGTACAAATACTAAAGAAGTAAATAATATAAATGCATGCTATTTTGCACAAAAAGTGGCACGCACATTGCAAATGGCAAACCAGAACCAGAACAAGAACTATATAAGGTTTCATGTTGCTCGTCTATAAGAAAAGCGCTTGCCGCCCTAAAATAATAAATACTTGCACAACATATCTCAACCAACCTAATCTATTCACTAGTCACTACATATAAACACCTCCTTTCAGAATATTGCAAAACACAGTAATGTAGCCCTTTTTGCATAAGTAACTACTACATTAAAACATTCGAACTCGTGCGCCTATTTGTCAGATAAGGAAACACAATTTTTTTTCTAATCCCCAACACCACAAGACAAGAGCATGAAATCTGCGCACAACATTTCATACTCATAACTCATCCATAACACCAAATAACCTCTCGAATCCTACTGTTCCACAGGTGATTATCCACACTATCCCATACCTAACACCAATTTTCATCCATTCTCGCGCTTCTAGCATGCAAATTCACCCCCCAAGGCCCCAACCCCTATGCACTACGGCCAAGCGGCCTCACACCCTCATCGCTTTTccccccaagcacgaattgcgagtccaatcgcgggtgcccaaaccctaaacgcagtgcccaatttcgaacccacactactcgtggcaaaggcaacaaagggaggagaggagatcgatcctcaccgtctcggggagcggcgtggagctcccgtcgtcgcccggcgccgcgccggccttgtccccgctcccgacgacgctgtcgacgtcgtccattaccacttccccccccccccgctctccagtcccacgaacgcggctcggaatctccgtcaccgggaaccgccgcgtcgagagccggggctcgccggcgtggtgtgtgcgtggatgccaccgcttctacgagggcctccacccggcgtgggggtggattggtctagggtttggagcggaggcggcggcggcggcgaggcggaggcgaggtggtcggcgacggagaagggaagaagaagaagaaataaaaggcgagagaaaagcagaaaggagaggagaggagaagcga
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| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgcggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggattTgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggagattatggacatgttggGtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtATtgctatagaagcaatctccatattggagaAGAtgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcggggGagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctctttttgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggattTacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagaggtatatcattgattcctgctctcaataataagacatgcactcttgcatgccaagtaccaggattcctatcattttatgtcctggctttgtggttctgtggtttctcagtaatcttggagcttttcctatattggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaagctttgtgttcagtcactgtatcaccaatggatgaacggcggcaaggacatcagaggaaacttcacaaatcacatcaagttaaccacatgctcgaaatactcgaagaaagcactgattcagcaagtatttacacatgtttgttga
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| Protein seq | MDDVDSVVGSGDKAGAAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGISLIPALNNKTCTLACQVPGFLSFYVLALWFCGFSVILELFLYWTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKLCVQSLYHQWMNGGKDIRGNFTNHIKLTTCSKYSKKALIQQVFTHVC |
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| Function | Casein kinase 1-like protein HD16 [UniProtKB/Swiss-Prot:Q852L0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006670 | OsKeNa_05g0006670.01 | Chr05 | 6135262 | 6145009 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgcggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggattTgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggagattatggacatgttggGtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtATtgctatagaagcaatctccatattggagaAGAtgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcggggGagcatgttgagtatgatcagaggcctgatatctttagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctctttttgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggattTacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaaggagaaatggtcgaagaatctttacctagcttccatttgctatggaagaacggtgtcatga
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| Protein seq | MDDVDSVVGSGDKAGAAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFSVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKEKWSKNLYLASICYGRTVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006670 | OsKeNa_05g0006670.03 | Chr05 | 6135479 | 6144984 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgcggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggattTgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggagattatggacatgttggGtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtATtgctatagaagcaatctccatattggagaAGAtgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcggggGagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctctttttgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggattTacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagaggtatatcattgattcctgctctcaataataagacatgcactcttgcatgccaagtaccaggattcctatcattttatgtcctggctttgtggttctgtggtttctcagtaatcttggagcttttcctatattggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaagctttgtgttcagtcactgtatcaccaatggatgaacggcggcaaggacatcagaggaaacttcacaaatcacatcaagttaaccacatgctcgaaatactcgaagaaagcactgattcagcaagtatttacacatgtttgttga
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| Protein seq | MDDVDSVVGSGDKAGAAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGISLIPALNNKTCTLACQVPGFLSFYVLALWFCGFSVILELFLYWTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKLCVQSLYHQWMNGGKDIRGNFTNHIKLTTCSKYSKKALIQQVFTHVC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006670 | OsKeNa_05g0006670.04 | Chr05 | 6135771 | 6144984 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgcggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggattTgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggagattatggacatgttggGtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtATtgctatagaagcaatctccatattggagaAGAtgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcggggGagcatgttgagtatgatcagaggcctgatatctttagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctctttttgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggattTacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaaggagaaatggtcgaagaatctttacctagcttccatttgctatggaagaacggtgtcatga
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| Protein seq | MDDVDSVVGSGDKAGAAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFSVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKEKWSKNLYLASICYGRTVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006670 | OsKeNa_05g0006670.02 | Chr05 | 6135231 | 6144984 | - | NAM | ||
| CDS seq | atggacgacgtcgacagcgtcgtcgggagcggggacaaggccggcgcggcgccgggcgacgacgggagctccacgccgctccccgagacggtccaagttgccaattcacctacttacaaacttgatagaaagctgggaaagggaggattTgggcaagtatatgttggtcggcgtatttcctctcctggtgttaccgacaggacacctggagcaaatgctttggaggtggcaataaaatttgaacatcgaaccagcaaaggctgcaattatggagctccctatgagtggcaagtttacaacgtgagcatgggtagactgataactaagattattatggacatgttggGtccaagcctgtgggatgtttggaataataattcccactcaatgtctgttgaaatggttgcttgtATtgctatagaagcaatctccatattggagaAGAtgcattcgaaagggtatgttcatggtgatgtaaaacctgagaattttttgcttggaaccccaggaaccctggaagagaaaaaactttttcttgttgaccttggattagctactaggtggaaagacactggttcggggGagcatgttgagtatgatcagaggcctgatatctttaggggaactgttcgctatgctagtgtgcatgctcacttaggaagaactggaagcagaagagatgatcttgaatcccttgcctatacacttgtttttcttttacggggtcgccttccttggcaaggataccagggagagaataaaggtttccttgtttgcaagaaaaaaatggcgacctctccagaatctttgtgctgcttctgtccacaacctttccggcaatttattgagtatgtagtgaacttaaagtttgatgaagaaccaaactatgcaaagtgcatttctctttttgatggcattgttggtccaaacccagacataaggccaatcaacactgatggtgctcagaagcttatatatcaggttggtcaaaaaagaggtcgcctaacgatggacgaagatgatgatgagcagccaaaaaagaagattagaatgggcatgcctgcaactcaatggattagtgtttataatgccagacggcctatgaagcaaaggtatcactacaatgttgcagatggtcggttagcacagcatattacaaaaggaaatgaagatgggttgtttattagttcagtggcttcttgttcaaatctgtgggctttaataatggatgctggcactggattTacttctcaagtatatgagctttctcaacattttcttcacaaggaatggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtggagcttgacttcctgtatccaagtgagggaatacatcggcgttgggacaatggttttcgcataactgcaacagcagctacatgggaccaggcggcatttatcttgagcattcccagaagaaagcctgctgatgaaacacaggaaaccctgaggacatctgctttccccagccagcatgtgaagctttgtgttcagtcactgtatcaccaatggatgaacggcggcaaggacatcagaggaaacttcacaaatcacatcaagttaaccacatgctcgaaatactcgaagaaagcactgattcagcaagtatttacacatgtttgttga
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| Protein seq | MDDVDSVVGSGDKAGAAPGDDGSSTPLPETVQVANSPTYKLDRKLGKGGFGQVYVGRRISSPGVTDRTPGANALEVAIKFEHRTSKGCNYGAPYEWQVYNVSMGRLITKIIMDMLGPSLWDVWNNNSHSMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTLEEKKLFLVDLGLATRWKDTGSGEHVEYDQRPDIFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFRQFIEYVVNLKFDEEPNYAKCISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYELSQHFLHKEWIMDQWERNFYITSLAGANNGSSLVVMSRGTQYAQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGSRWAVVMSRNAGFTDQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFILSIPRRKPADETQETLRTSAFPSQHVKLCVQSLYHQWMNGGKDIRGNFTNHIKLTTCSKYSKKALIQQVFTHVC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006670 | OsKeNa_05g0006670.05 | Chr05 | 6135830 | 6144983 | - | IsoSeq | ||
| CDS seq | atggataatggatcagtgggagagaaacttctatatcacttcattagcaggtgcaaacaatggcagttctctggtggtcatgtcaagagggacgcaatatgcccaacaatcctacaaagtaagcgactcatttccCttcaagtggataaacaagaagtggaaggagggtttctatgtcactgctatggccactgcaggaagccggtgggcagtggtcatgtcccggaatgctggctttacagatcaggttgtgga
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| Protein seq | MDNGSVGEKLLYHFISRCKQWQFSGGHVKRDAICPTILQSKRLISLQVDKQEVEGGFLCHCYGHCRKPVGSGHVPECWLYRSGCG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 6139370 | 6139490 | - | OsKeNa_05g0006670.02,OsKeNa_05g0006670.03,OsKeNa_05g0006670.05 | OsKeNa_05g0006670.01,OsKeNa_05g0006670.04,OsKeNa_05g0006670.02,OsKeNa_05g0006670.05,OsKeNa_05g0006670.03 | All |
| A5 | Chr05 | 6137013 | 6138077 | - | OsKeNa_05g0006670.03 | OsKeNa_05g0006670.01,OsKeNa_05g0006670.04,OsKeNa_05g0006670.02,OsKeNa_05g0006670.05,OsKeNa_05g0006670.03 | All |
| AL | Chr05 | 6135231 | 6136496 | - | OsKeNa_05g0006670.02 | OsKeNa_05g0006670.02,OsKeNa_05g0006670.04 | All |
| AL | Chr05 | 6135231 | 6136496 | - | OsKeNa_05g0006670.02 | OsKeNa_05g0006670.02,OsKeNa_05g0006670.05 | All |
| AL | Chr05 | 6135479 | 6136496 | - | OsKeNa_05g0006670.03 | OsKeNa_05g0006670.04,OsKeNa_05g0006670.03 | All |
| AL | Chr05 | 6135479 | 6136496 | - | OsKeNa_05g0006670.03 | OsKeNa_05g0006670.05,OsKeNa_05g0006670.03 | All |
| MX | Chr05 | 6140031 | 6142536 | - | OsKeNa_05g0006670.02 | OsKeNa_05g0006670.02,OsKeNa_05g0006670.05 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.658863 | 5.138743 | 3.561349 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0200500 | RBH | 2.591762 | 2.096377 | 6.352777 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11140 | RBH | 1.564979 | 1.481358 | 1.316581 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0200500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006610 | RBH | 0.535162 | 9.462626 | 7.128954 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006900 | RBH | 2.011171 | 9.424856 | 8.310195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006550 | RBH | 1.449194 | 9.419225 | 12.627111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006620 | RBH | 0.250002 | 0.231265 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006720 | RBH | 10.970388 | 12.340611 | 20.035318 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006540 | RBH | 0.345254 | 0.060255 | 1.992681 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0092400 | RBH | 14.463429 | 23.3403425 | 16.6159145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006610 | RBH | 0.291114 | 0.223224 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006550 | RBH | 0.876601 | 16.749435 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006630 | RBH | 5.993112 | 14.626306 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006710 | RBH | 0.587193 | 1.228991 | 1.374216 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006680 | RBH | 0.244091 | 7.014049 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006440 | RBH | 0.604470 | 1.500323 | 3.171739 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006680 | RBH | 1.688929 | 15.512858 | 8.059267 |
