Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0006090 | OGI:05015480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:5676737-5678246 | ||||||||
| Gene Symbol | OsVSP2, - | ||||||||||
| DNA seq | tgaaaggaaCTttttgatccattactctcattattgattatatattgtcacaaatccaagcagcttgctcaacacacgatacatcgatcaatatatggccaacccatgccaaacaagggttattacaaattcaaatctcacctctcatcaatagctaagaaaggaaatcaagcatatgcttcaaaggttaactactacaaacagttcatgagaagaaatcaagtaaatatatgaaacacacgcgaattatggatcatcgagatatggctagctagcgaagctagcattatggcgcaggccggcagccgagctaggcgacatagtacatggggttggggtacttaaacgtacggcagccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatagccggcgtccacaagcttctgccgctcatcagtcttgaacgcctgtgttgtggtctgaagcccaaccggctggaacaacagtttctcccagctgcagtaaccctgagagaggaggttgttggtggtgactgtcctttggtcctcggtgcggtcagtcaggaatactggcttaacaccgagctggagcagccgttggtagagccgcagcgtcccctgcagcgccggtgcgcttccctcggacacgtactggatgaagcttgcctgatcatatggctgaactctgcgaacggaataataatttagattatttcaaaaagaatactcccttcattttttaatagatgacaccgttgactttcgccatcacgtttgaccatttgttctattcaaaaggttttttgtaaatgttatttattttgttataacatatttattattgaaaaaaatttaagtacaatttatactttagcatatttgcactatattttttaataagacgaataatcaaacgttattacaaaagtgagtgacttcatctattaaaaaggagtagtatttaaaagtgctaaaacattaataaatgtctaattaaggtggttagtgggtacatccatttatattaattagaatttcaaatttaggactcatattttttttgagagggaacaatttattaaatttgatgatgatatataactaaaagaaacttggtgacctagggtataggtatatgtgtataaatacgtacccgtagccatggttggcttggtagggcagtgtggagagcgcggTttcgtcgacgtcgaacacccagatctccttgccgctgccggagagcttgaggctctcggcgtaggcgatggcctcgttgatcaccacgtcggcgtcgcgggggtatcgatcgccggtgaggtagtcggcgaggtatttggcgcaatccgccgtgaacgtcttccagccgatgatgttgtgcgcctcaatggccgtcctcacgctgccgcagtacggcggcggcttcgcctcctgggcgctgcagaagcagctgcccgccgccgccaccaccgtgagcactaggagcaacctcgccgtcgccat
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| CDS seq | atggcgacggcgaggttgctcctagtgctcacggtggtggcggcggcgggcagctgcttctgcagcgcccaggaggcgaagccgccgccgtactgcggcagcgtgaggacggccattgaggcgcacaacatcatcggctggaagacgttcacggcggattgcgccaaatacctcgccgactacctcaccggcgatcgatacccccgcgacgccgacgtggtgatcaacgaggccatcgcctacgccgagagcctcaagctctccggcagcggcaaggagatctgggtgttcgacgtcgacgaaAccgcgctctccacactgccctaccaagccaaccatggctacgggtacgcaagcttcatccagtacgtgtccgagggaagcgcaccggcgctgcaggggacgctgcggctctaccaacggctgctccagctcggtgttaagccagtattcctgactgaccgcaccgaggaccaaaggacagtcaccaccaacaacctcctctctcagggttactgcagctgggagaaactgttgttccagccggttgggcttcagaccacaacacaggcgttcaagactgatgagcggcagaagcttgtggacgccggctatgtcatcgtcggcaacatcggcgaccagtggaccgacatcctcggctcgccggagggctgccgtacgtttaagtaccccaaccccatgtactatgtcgcctag
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| Protein seq | MATARLLLVLTVVAAAGSCFCSAQEAKPPPYCGSVRTAIEAHNIIGWKTFTADCAKYLADYLTGDRYPRDADVVINEAIAYAESLKLSGSGKEIWVFDVDETALSTLPYQANHGYGYASFIQYVSEGSAPALQGTLRLYQRLLQLGVKPVFLTDRTEDQRTVTTNNLLSQGYCSWEKLLFQPVGLQTTTQAFKTDERQKLVDAGYVIVGNIGDQWTDILGSPEGCRTFKYPNPMYYVA |
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| Function | Acid phosphatase 1 [UniProtKB/Swiss-Prot:P27061] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006090 | OsLima_05g0006090.01 | Chr05 | 5676737 | 5678246 | - | NAM | ||
| CDS seq | atggcgacggcgaggttgctcctagtgctcacggtggtggcggcggcgggcagctgcttctgcagcgcccaggaggcgaagccgccgccgtactgcggcagcgtgaggacggccattgaggcgcacaacatcatcggctggaagacgttcacggcggattgcgccaaatacctcgccgactacctcaccggcgatcgatacccccgcgacgccgacgtggtgatcaacgaggccatcgcctacgccgagagcctcaagctctccggcagcggcaaggagatctgggtgttcgacgtcgacgaaAccgcgctctccacactgccctaccaagccaaccatggctacgggtacgcaagcttcatccagtacgtgtccgagggaagcgcaccggcgctgcaggggacgctgcggctctaccaacggctgctccagctcggtgttaagccagtattcctgactgaccgcaccgaggaccaaaggacagtcaccaccaacaacctcctctctcagggttactgcagctgggagaaactgttgttccagccggttgggcttcagaccacaacacaggcgttcaagactgatgagcggcagaagcttgtggacgccggctatgtcatcgtcggcaacatcggcgaccagtggaccgacatcctcggctcgccggagggctgccgtacgtttaagtaccccaaccccatgtactatgtcgcctag
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| Protein seq | MATARLLLVLTVVAAAGSCFCSAQEAKPPPYCGSVRTAIEAHNIIGWKTFTADCAKYLADYLTGDRYPRDADVVINEAIAYAESLKLSGSGKEIWVFDVDETALSTLPYQANHGYGYASFIQYVSEGSAPALQGTLRLYQRLLQLGVKPVFLTDRTEDQRTVTTNNLLSQGYCSWEKLLFQPVGLQTTTQAFKTDERQKLVDAGYVIVGNIGDQWTDILGSPEGCRTFKYPNPMYYVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0190300 | RBH | 0.0 | 0.0 | 1.609847 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g09740 | RBH | 0.0 | 0.0 | 0.413291 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0190300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006130 | RBH | 0.0 | 0.0 | 59.719608 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006170 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006060 | RBH | 0.0 | 0.0 | 20.186150 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006180 | RBH | 0.0 | 0.0 | 41.702347 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0084800 | RBH | 24.8277335 | 0.2305055 | 0.356489 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005970 | RBH | 0.0 | 0.0 | 2.088121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0084300 | RBH | 96.828182 | 0 | 4.1989095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006180 | RBH | 1.289190 | 0.0 | 6.412146 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006150 | RBH | 0.213116 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005930 | RBH | 0.0 | 0.0 | 12.592359 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006180 | RBH | 0.0 | 0.0 | 13.445653 |
