Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0006170 | OGI:05015480 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:5476764-5478345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgaaaggaactttttgatccattactctcattattgattatatattgtcacaaatccaagcagcttgctcaacacacgatacatcgatcaatatatggccaacccatgccaaacaagggttattacaaattcaaatctcacctctcatcaatagctaagaaaggaaatcaagcatatgcttcaaaggttaactactacaaacagttcatgagaagaaatcaagtaaatatatgaaacacacgcgaattatggatcatcgagatatggctagcttcgaagctagcgaagctagcattatggcgcaggccggcagccgagctaggcgacatagtacatggggttggggtacttaaacgtacggcagccctccggcgagccgaggatgtcagtccactggtcgccgatgttgccgacgatgacatagccggcgtcctcaagcttctgccgctcatcagtcttgaacgcctgtgttgtggtctgaagcccaaccggctggaacaacagtttctcccagctgcagtaaccctgagagaggaggttgttggtggtgactgtcctttggtcctcggtgcggtcagtcaggaatactggcttaacaccgagctggagcagccgttggtagagccgcagcgtcccctgcagcgccggtgcgcttccctcggacacgtactggatgaagcttgcctgatcatatggctgaactctgcgaacggaataataatttagattatttcgaaaagaatactcccttcattttttaatagatgacaccgttgactttcgccatcacgtttgaccatttgttctatttaaaaggtttttgtaaatgttatttattttgttataacatatttattattgaaaaaaatttaagtacaatttatactttagcatatttgcactatattttttaataagaggaataatcaaacgttattacaaaagtgagtgacttcatctattaaaaaaggagtagtatttaaaagtgctaaaacattaataaatgtctaattaaggtggttagtgggtacatccatttatattaattagaatttcaaatttaggactcatattttttttgagagggaacaatttattaaatttgatgatgatatataactaaaagaaacttggtgacctagggtataggtatatgtgtataaatacgtacccgtagccatggttggcttggtagggcagtgtggagagcgcggtttcgtcgacgtcgaacacccagatctccttgccgctgccggagagcttgaggctctcggcgtaggcgatggcctcgttgatcaccacgtcggcgtcgcgggggtatcgatcgccggtgaggtagtcggcgaggtatttggtgcaatccgccgtgaacgtcttccagccgatgatgttgtgcgcctcaatggccgtcctcacgctgccgcagtacggcggcggcttcgcctcctgggcgctgcagaagcagctgcccgccgccgccaccaccgtgagcactaggagcaacctcgccgtcgccattgttgccgtctcctttctcttgagcagtgatgagctgctgtagaggagagatcgaggaggctgt
More
|
||||||||||
| CDS seq | atggcgacggcgaggttgctcctagtgctcacggtggtggcggcggcgggcagctgcttctgcagcgcccaggaggcgaagccgccgccgtactgcggcagcgtgaggacggccattgaggcgcacaacatcatcggctggaagacgttcacggcggattgcaccaaatacctcgccgactacctcaccggcgatcgatacccccgcgacgccgacgtggtgatcaacgaggccatcgcctacgccgagagcctcaagctctccggcagcggcaaggagatctgggtgttcgacgtcgacgaaaccgcgctctccacactgccctaccaagccaaccatggctacggcgcaccggcgctgcaggggacgctgcggctctaccaacggctgctccagctcggtgttaagccagtattcctgactgaccgcaccgaggaccaaaggacagtcaccaccaacaacctcctctctcagggttactgcagctgggagaaactgttgttccagccggttgggcttcagaccacaacacaggcgttcaagactgatgagcggcagaagcttgaggacgccggctatgtcatcgtcggcaacatcggcgaccagtggactgacatcctcggctcgccggagggctgccgtacgtttaagtaccccaaccccatgtactatgtcgcctag
More
|
||||||||||
| Protein seq | MATARLLLVLTVVAAAGSCFCSAQEAKPPPYCGSVRTAIEAHNIIGWKTFTADCTKYLADYLTGDRYPRDADVVINEAIAYAESLKLSGSGKEIWVFDVDETALSTLPYQANHGYGAPALQGTLRLYQRLLQLGVKPVFLTDRTEDQRTVTTNNLLSQGYCSWEKLLFQPVGLQTTTQAFKTDERQKLEDAGYVIVGNIGDQWTDILGSPEGCRTFKYPNPMYYVA |
||||||||||
| Function | Acid phosphatase 1 [UniProtKB/Swiss-Prot:P27061] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006170 | OsKeNa_05g0006170.01 | Chr05 | 5476764 | 5478281 | - | NAM | ||
| CDS seq | atggcgacggcgaggttgctcctagtgctcacggtggtggcggcggcgggcagctgcttctgcagcgcccaggaggcgaagccgccgccgtactgcggcagcgtgaggacggccattgaggcgcacaacatcatcggctggaagacgttcacggcggattgcaccaaatacctcgccgactacctcaccggcgatcgatacccccgcgacgccgacgtggtgatcaacgaggccatcgcctacgccgagagcctcaagctctccggcagcggcaaggagatctgggtgttcgacgtcgacgaaaccgcgctctccacactgccctaccaagccaaccatggctacggcgcaccggcgctgcaggggacgctgcggctctaccaacggctgctccagctcggtgttaagccagtattcctgactgaccgcaccgaggaccaaaggacagtcaccaccaacaacctcctctctcagggttactgcagctgggagaaactgttgttccagccggttgggcttcagaccacaacacaggcgttcaagactgatgagcggcagaagcttgaggacgccggctatgtcatcgtcggcaacatcggcgaccagtggactgacatcctcggctcgccggagggctgccgtacgtttaagtaccccaaccccatgtactatgtcgcctag
More
|
|||||||
| Protein seq | MATARLLLVLTVVAAAGSCFCSAQEAKPPPYCGSVRTAIEAHNIIGWKTFTADCTKYLADYLTGDRYPRDADVVINEAIAYAESLKLSGSGKEIWVFDVDETALSTLPYQANHGYGAPALQGTLRLYQRLLQLGVKPVFLTDRTEDQRTVTTNNLLSQGYCSWEKLLFQPVGLQTTTQAFKTDERQKLEDAGYVIVGNIGDQWTDILGSPEGCRTFKYPNPMYYVA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006170 | OsKeNa_05g0006170.02 | Chr05 | 5476767 | 5478345 | - | IsoSeq | ||
| CDS seq | atgagcggcagaagcttgaggacgccggctatgtcatcgtcggcaacatcggcgaccagtggactgacatcctcggctcgccggagggctgccgtacgtttaagtaccccaaccccatgtactatgtcgcctagctcggctgccggcctgcgccataatgctagcttcgctagcttcgaagctagccatatctcgatgatccataattcgcgtgtgtttcatatattt
More
|
|||||||
| Protein seq | MSGRSLRTPAMSSSATSATSGLTSSARRRAAVRLSTPTPCTMSPSSAAGLRHNASFASFEASHISMIHNSRVFHIF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 5477415 | 5477935 | - | OsKeNa_05g0006170.02 | OsKeNa_05g0006170.01,OsKeNa_05g0006170.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0190300 | RBH | 0.0 | 0.0 | 1.609847 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g09740 | RBH | 0.0 | 0.0 | 0.413291 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0190300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006130 | RBH | 0.0 | 0.0 | 59.719608 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006060 | RBH | 0.0 | 0.0 | 20.186150 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006180 | RBH | 0.0 | 0.0 | 41.702347 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0084800 | RBH | 24.8277335 | 0.2305055 | 0.356489 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005970 | RBH | 0.0 | 0.0 | 2.088121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0084300 | RBH | 96.828182 | 0 | 4.1989095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006180 | RBH | 1.289190 | 0.0 | 6.412146 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006150 | RBH | 0.213116 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005930 | RBH | 0.0 | 0.0 | 12.592359 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006180 | RBH | 0.0 | 0.0 | 13.445653 |
