Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0005370 | OGI:05013240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:4837609-4843092 | ||||||||
| Gene Symbol | OsRFPH2-5, DLN133, OsDLN133 | ||||||||||
| DNA seq | TtttttccctttttccaaatatacttcgccactgcaacgcaaaggacgaagaactcgagtcaagtcgccgacttttggagttctcctcgccccagctcggtaaattccttcgctttttctccgctggttcggagatttccatgttcacttttgttttttttttgtttaattaagggctttgctttgatggaagggttgggtactggttccttccctccggatcaatcttgcttcttgcgctcacccaacctagtaattttttcctctcccgatttgtttaatgctaatctaggtggttgatgatgcttgcgagccaggcattgattcggctttaagcttgcctgcttgcttcgccgtcttgttctttgagttcttggttttcatggatccttgatccgatttaggggttgctgctgctagccgtggttggtgagacggttcttggagaagggggatttcttgaggtaggtggtagcggtagatttcctttctgttctatgccctcttcaattgaatttttggaagtctccagcgttttatttttggaagttttgtagtttgtgaaactaattgatgaatgaatgtgaggggaaattggtagatttcgtgttgtgctgctactagaccatttcctgacccatgtggcatgggagccatttgattgttattctcattgtggaggttatgagttgatatttccagattttgtgcatgaatgttcaaaatgtttagttctgtttcgttaggacttcaaataggtagaattagttagtgtcttggggctgcatggaagaagattggaagaatttaatttgttacattagaacttcaaataggcattgttgttgtaggctcaaacttttacattgtactgttatcttcatctactctgactgatgtccaaagaatgcacatgcccagctcgtccctgtctcttgatgctttcggtttgttcatagtttatataaattcttgggtctcattagctatgtactataatttaatagctagtgaccaccctgatgtttctgtagcatgctatcagtgggtatatcgacctgtttatgttgcaattgatgaccatttcacatcttgttctgtcatgtgcattccacgatgtttctttcattgtgatgaagatgaatacagtaacaagatgcaaatcaaaacattgttttctgtgtgaatcatatatcctctctatagtggtttacaaacacccctgggtcattaggaaagcacccaaagttttacttgctattgaatatggtttaaacatagctttttcataccagtttcaggcataagtgtatattatgtatgttcggtaaaaataagtgtatatatgtactccgtatgtgctaatcttaggagcttgtgatcccagagaatttattctaatattcgataAGtagtatatgcatatggttaggGGTgaaaacggtaacggtaattaccggccgaccggcgttcgttttcgactttctaccggccgagccatatggaaatggtaatcgaccgaaacaaaaatggaaatggtaaaaaatatggaaatgaaaacggaaatggttttgctgttataccgatcgtttccgtatttactgtattcttgcggaaattaccgtttcttataatatggtaattaccgtattctaaatatgtcgatattataggacatgtttatacttgacccacagcttatagattgaatgactcttcaataaaatctctaacttttgtacatggctaaaatgaagttaatttataatttatatagtataagcttgaatttatgtatatatactccctccgtataggaaaaaaacgtcgttctagcccctaaccttgtttgcgatttaaacgacgttctgaaccacagccaagtcttatggacgggattgcccttgtctattcgatagccgagctgccgcaattaatctgcagcacgcccgctcgcctggtttaattccatcagcaccgcatgtaggcatgcaggctgccgcacgccgctcaacctcgtcgctcacgctcgccgctgccgccgcttgcgtcgcgctcgccgaccccgttctcgtcgctctcgccgccgccaccgcttgcgtcgcgctcgccggccacgctctccgccgccgccgcatgcagtggcagcgaacccaaactaaaaaagcgaaacaagaaaacgcacatgcacgagcgccatgcagcgaaccaagtatccaagccggcccaaaacagtgccgtgcaaaaatcacaagcaaaatcaagcgaccagcttatctccgccaggaatcgaacctgggtcccgaggactccaaccttggcgcactagccacttgagttaagtttgtttctcacatagaatactacgcgcaaccatatttaataGgggcagacagggaaaaatatccctaattaatcactccttggtatgctaaatgctgtcctaaacgtcattttttaccagtatggagggagtataacATacttatgtaaagttaaatatatgtttttatagtttaatgtttccgtatttgttaccgatttccgatctgtaccgacatgtttccgtccgtattgttccgtttccggttttccgatatttccgatatcgttttcgtttccgactttaccgtttccgatttcgtttccgagaaaaatatggttacggaaatggttgaggctgttttccgatcgtttccgaccgttttcatctctacatatggtatagaatttatttgagaatcttctccatatttttgggtggtgcacatgtattgtacggttgagtctaacaatgatgttatggcacacaTttatacacagacttgcttgtcctcacaaatcaagccattagtatgaatcaccaggtcagagctcagagcataaatttctaagcctaagagcacctgtcagataagcaggatttagtcttttacgctagctcaatcgtatcttagtgacaatttaggtctggtttggattggcatcaatctgcggcctactaatattctggttgctttgatggtaccttgttgatatttggattgaagccaatttttgcctacaatacgaaaatttgactaatagctagtaacaaatctactctaccaaatttgctagtgccaaaacttgcctaggtttcggcactaccaacattttggtagggctttAaaccaaaccgacccttaaagtcatgtcaagatgctgaaacaaacaaaccatccctttttcctaatgcttttgataggcttctgtataccacattgaccaaaaggcaatcaacaaaatcacgtttggcttattatgtttgccatgtcttactacagaagataacaggcttggtttaagggggctagataaatatgtaattgatctccagtgttttttttttgttcaagttgagtgaagatgacctgatcctgttgggaaaataaattggattaagtggatttgatagagtgatattaattttaatttgatgcaggtgcttttctgggaggtgtaaccaactaaattcctatgctaccttctggttgatggccgtccctcctgttgaatcagAaacaagaagtgaagaaacagataatttccctttacttgcagaccacatggaaaatactggacatcatgcacatgcagttgatatcccatgggattcttcaccatcgacatctcgccgagataatcataatggatttgatcaattacctcgtatcttagaaggttctcctgggacatctactccatctaactctcagaatggtcctctagcaagaagagatgataatcgtggtcgtcgtcagcctagtCccttgaattctggttgctggatctcagttgagctagttgtaaatgttagccagatcatagcagctatttgtgTtctgtcagtatcaaggaatgagcatccacactctccgttatttgagtgggtcattggttatacagtaggttgtactgccacgctgcctcatctttactggcgctatctccatcgcaacctcccaaccactgggcaagagccaacagttcagaatatccctccaaacaacacccctgaagctaattcatatggagtaaccggcacaaatggagtctcaagaaacaatgaggcaacagtaaatccaaggtaaccgattcttccaactgaagtcttttttttgtttttgaaattgatttgtctgcatatatctagtatctagactctatggtacaaggcatgttaaccaactgcactagtaattatcacaatttaagatattaggcctacacaggaataactaaattctgttggttgatcacaactaaattcgtatagaaatatttgatcactgcactcctatcagaagttctgttattcaggttatatttcatatgcaataaactacgtatggtcttccagagatttaagtttcccatgttttattaacttttcctttagtccaagttctgagctacagtcttaccatttgttttaggttccaagcttttgctgatcacttcaaaatggctctggactgtttctttgctgtgtggttcgttgtgggaaatgtatgggtatttggtggacattcttctgctcacgacgcgcccaacttgtacaggtatgatgcttgcctacattgtgttgtagatctgtgacttaaccaaaaatttatttggatgtttcatcatgcaatatttcttccccaggttgtgtattgccttcctcacattcagctgcatcggctatgctatgcctttcatcctctgcgcattgatatgttgctgcctaccctgcataatctctatcttgggaTttcgggaagatctaaaccaaaacagaggagctagtgcggaaacaatcaatgccttgggaacatgcaagttcaagtcaaagaaaactcgtgatggagatggaaacgaagttggtgtCGgtgttgtggctgctggaacaaacaaggagcgagtcatttctgcagaagatgctgtgagtttttCtcccagactcttttatacttcacaactaaaatctagttatctcctcttggtgctcttagtttaaaattaaggggtgctcttggaattgcaggtctgctgcatctgcttggccagatatgtcgataacgatgatctccgagagctcccttgtgcgcacttcttccacaaggattgtgtggacaaatggctcaagataaacgcgctgtgCcccctttgcaaggctGAgatagatggtgtctccacaagtgctccagccattggctttgggcgtcgccacagcgacaacagggtaggaaacgacattgaatcacaactataactctcttcccacttcgttggcagcgtggatcacgcctttgatgaggccttccacacatcaacctgtaaattatagaggtagacatcaagatgtaaagggtcctcttacgatccaacaaagttcttttctgaatgactactgcctccactgtcagtatatattgcttccagcatttgtttcttctc
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| CDS seq | atggccgtccctcctgttgaatcagAaacaagaagtgaagaaacagataatttccctttacttgcagaccacatggaaaatactggacatcatgcacatgcagttgatatcccatgggattcttcaccatcgacatctcgccgagataatcataatggatttgatcaattacctcgtatcttagaaggttctcctgggacatctactccatctaactctcagaatggtcctctagcaagaagagatgataatcgtggtcgtcgtcagcctagtCccttgaattctggttgctggatctcagttgagctagttgtaaatgttagccagatcatagcagctatttgtgTtctgtcagtatcaaggaatgagcatccacactctccgttatttgagtgggtcattggttatacagtaggttgtactgccacgctgcctcatctttactggcgctatctccatcgcaacctcccaaccactgggcaagagccaacagttcagaatatccctccaaacaacacccctgaagctaattcatatggagtaaccggcacaaatggagtctcaagaaacaatgaggcaacagtaaatccaaggttccaagcttttgctgatcacttcaaaatggctctggactgtttctttgctgtgtggttcgttgtgggaaatgtatgggtatttggtggacattcttctgctcacgacgcgcccaacttgtacaggttgtgtattgccttcctcacattcagctgcatcggctatgctatgcctttcatcctctgcgcattgatatgttgctgcctaccctgcataatctctatcttgggaTttcgggaagatctaaaccaaaacagaggagctagtgcggaaacaatcaatgccttgggaacatgcaagttcaagtcaaagaaaactcgtgatggagatggaaacgaagttggtgtCGgtgttgtggctgctggaacaaacaaggagcgagtcatttctgcagaagatgctgtctgctgcatctgcttggccagatatgtcgataacgatgatctccgagagctcccttgtgcgcacttcttccacaaggattgtgtggacaaatggctcaagataaacgcgctgtgCcccctttgcaaggctGAgatagatggtgtctccacaagtgctccagccattggctttgggcgtcgccacagcgacaacagggtaggaaacgacattgaatcacaactataa
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| Protein seq | MAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPSTSRRDNHNGFDQLPRILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPTTGQEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWFVVGNVWVFGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFILCALICCCLPCIISILGFREDLNQNRGASAETINALGTCKFKSKKTRDGDGNEVGVGVVAAGTNKERVISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGRRHSDNRVGNDIESQL |
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| Function | E3 ubiquitin-protein ligase At4g11680 [UniProtKB/Swiss-Prot:Q93Z92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0005370 | OsLima_05g0005370.01 | Chr05 | 4837609 | 4843092 | + | NAM | ||
| CDS seq | atggccgtccctcctgttgaatcagAaacaagaagtgaagaaacagataatttccctttacttgcagaccacatggaaaatactggacatcatgcacatgcagttgatatcccatgggattcttcaccatcgacatctcgccgagataatcataatggatttgatcaattacctcgtatcttagaaggttctcctgggacatctactccatctaactctcagaatggtcctctagcaagaagagatgataatcgtggtcgtcgtcagcctagtCccttgaattctggttgctggatctcagttgagctagttgtaaatgttagccagatcatagcagctatttgtgTtctgtcagtatcaaggaatgagcatccacactctccgttatttgagtgggtcattggttatacagtaggttgtactgccacgctgcctcatctttactggcgctatctccatcgcaacctcccaaccactgggcaagagccaacagttcagaatatccctccaaacaacacccctgaagctaattcatatggagtaaccggcacaaatggagtctcaagaaacaatgaggcaacagtaaatccaaggttccaagcttttgctgatcacttcaaaatggctctggactgtttctttgctgtgtggttcgttgtgggaaatgtatgggtatttggtggacattcttctgctcacgacgcgcccaacttgtacaggttgtgtattgccttcctcacattcagctgcatcggctatgctatgcctttcatcctctgcgcattgatatgttgctgcctaccctgcataatctctatcttgggaTttcgggaagatctaaaccaaaacagaggagctagtgcggaaacaatcaatgccttgggaacatgcaagttcaagtcaaagaaaactcgtgatggagatggaaacgaagttggtgtCGgtgttgtggctgctggaacaaacaaggagcgagtcatttctgcagaagatgctgtctgctgcatctgcttggccagatatgtcgataacgatgatctccgagagctcccttgtgcgcacttcttccacaaggattgtgtggacaaatggctcaagataaacgcgctgtgCcccctttgcaaggctGAgatagatggtgtctccacaagtgctccagccattggctttgggcgtcgccacagcgacaacagggtaggaaacgacattgaatcacaactataa
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| Protein seq | MAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPSTSRRDNHNGFDQLPRILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPTTGQEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWFVVGNVWVFGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFILCALICCCLPCIISILGFREDLNQNRGASAETINALGTCKFKSKKTRDGDGNEVGVGVVAAGTNKERVISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGRRHSDNRVGNDIESQL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0005370 | OsLima_05g0005370.02 | Chr05 | 4837665 | 4843092 | + | NAM | ||
| CDS seq | atggccgtccctcctgttgaatcagAaacaagaagtgaagaaacagataatttccctttacttgcagaccacatggaaaatactggacatcatgcacatgcagttgatatcccatgggattcttcaccatcgacatctcgccgagataatcataatggatttgatcaattacctcgtatcttagaaggttctcctgggacatctactccatctaactctcagaatggtcctctagcaagaagagatgataatcgtggtcgtcgtcagcctagtCccttgaattctggttgctggatctcagttgagctagttgtaaatgttagccagatcatagcagctatttgtgTtctgtcagtatcaaggaatgagcatccacactctccgttatttgagtgggtcattggttatacagtaggttgtactgccacgctgcctcatctttactggcgctatctccatcgcaacctcccaaccactgggcaagagccaacagttcagaatatccctccaaacaacacccctgaagctaattcatatggagtaaccggcacaaatggagtctcaagaaacaatgaggcaacagtaaatccaaggttccaagcttttgctgatcacttcaaaatggctctggactgtttctttgctgtgtggttcgttgtgggaaatgtatgggtatttggtggacattcttctgctcacgacgcgcccaacttgtacaggttgtgtattgccttcctcacattcagctgcatcggctatgctatgcctttcatcctctgcgcattgatatgttgctgcctaccctgcataatctctatcttgggaTttcgggaagatctaaaccaaaacagaggagctagtgcggaaacaatcaatgccttgggaacatgcaagttcaagtcaaagaaaactcgtgatggagatggaaacgaagttggtgtCGgtgttgtggctgctggaacaaacaaggagcgagtcatttctgcagaagatgctgtctgctgcatctgcttggccagatatgtcgataacgatgatctccgagagctcccttgtgcgcacttcttccacaaggattgtgtggacaaatggctcaagataaacgcgctgtgCcccctttgcaaggctGAgatagatggtgtctccacaagtgctccagccattggctttgggcgtcgccacagcgacaacagggtaggaaacgacattgaatcacaactataa
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| Protein seq | MAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPSTSRRDNHNGFDQLPRILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPTTGQEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWFVVGNVWVFGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFILCALICCCLPCIISILGFREDLNQNRGASAETINALGTCKFKSKKTRDGDGNEVGVGVVAAGTNKERVISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGRRHSDNRVGNDIESQL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0005370 | OsLima_05g0005370.03 | Chr05 | 4837665 | 4843092 | + | NAM | ||
| CDS seq | atggccgtccctcctgttgaatcagAaacaagaagtgaagaaacagataatttccctttacttgcagaccacatggaaaatactggacatcatgcacatgcagttgatatcccatgggattcttcaccatcgacatctcgccgagataatcataatggatttgatcaattacctcgtatcttagaaggttctcctgggacatctactccatctaactctcagaatggtcctctagcaagaagagatgataatcgtggtcgtcgtcagcctagtCccttgaattctggttgctggatctcagttgagctagttgtaaatgttagccagatcatagcagctatttgtgTtctgtcagtatcaaggaatgagcatccacactctccgttatttgagtgggtcattggttatacagtaggttgtactgccacgctgcctcatctttactggcgctatctccatcgcaacctcccaaccactgggcaagagccaacagttcagaatatccctccaaacaacacccctgaagctaattcatatggagtaaccggcacaaatggagtctcaagaaacaatgaggcaacagtaaatccaaggttccaagcttttgctgatcacttcaaaatggctctggactgtttctttgctgtgtggttcgttgtgggaaatgtatgggtatttggtggacattcttctgctcacgacgcgcccaacttgtacaggttgtgtattgccttcctcacattcagctgcatcggctatgctatgcctttcatcctctgcgcattgatatgttgctgcctaccctgcataatctctatcttgggaTttcgggaagatctaaaccaaaacagaggagctagtgcggaaacaatcaatgccttgggaacatgcaagttcaagtcaaagaaaactcgtgatggagatggaaacgaagttggtgtCGgtgttgtggctgctggaacaaacaaggagcgagtcatttctgcagaagatgctgtctgctgcatctgcttggccagatatgtcgataacgatgatctccgagagctcccttgtgcgcacttcttccacaaggattgtgtggacaaatggctcaagataaacgcgctgtgCcccctttgcaaggctGAgatagatggtgtctccacaagtgctccagccattggctttgggcgtcgccacagcgacaacagggtaggaaacgacattgaatcacaactataa
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| Protein seq | MAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPSTSRRDNHNGFDQLPRILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPTTGQEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWFVVGNVWVFGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFILCALICCCLPCIISILGFREDLNQNRGASAETINALGTCKFKSKKTRDGDGNEVGVGVVAAGTNKERVISAEDAVCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGRRHSDNRVGNDIESQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 4837707 | 4841093 | + | OsLima_05g0005370.01 | OsLima_05g0005370.03,OsLima_05g0005370.01 | All |
| A5 | Chr05 | 4837707 | 4841093 | + | OsLima_05g0005370.02 | OsLima_05g0005370.02,OsLima_05g0005370.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.264485 | 0.065013 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0179000 | RBH | 1.127719 | 2.096272 | 3.970759 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08610 | RBH | 0.762622 | 1.399928 | 1.060894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0179000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005400 | RBH | 0.381988 | 16.668472 | 2.883456 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005370 | RBH | 0.099837 | 3.792299 | 3.138399 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005270 | RBH | 0.821069 | 22.092688 | 5.562943 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005360 | RBH | 0.290685 | 0.645706 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005470 | RBH | 4.904235 | 15.428879 | 12.145302 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0071200 | RBH | 3.968589 | 9.924267 | 6.155929 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005230 | RBH | 0.510462 | 1.006823 | 0.339228 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0072500 | RBH | 4.6205995 | 8.9507885 | 5.7854405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005350 | RBH | 0.076774 | 0.112792 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005310 | RBH | 0.484275 | 4.828509 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005390 | RBH | 2.905287 | 26.692373 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005410 | RBH | 1.107337 | 1.612207 | 0.854647 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005420 | RBH | 0.127211 | 9.840652 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005260 | RBH | 0.895013 | 6.789107 | 1.221432 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005480 | RBH | 1.382301 | 20.425440 | 0.000000 |
