Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0002800 | OGI:05006710 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:2328732-2332792 | ||||||||
| Gene Symbol | R2R3-MYB, OsMYB55/61-L, MYB55/61-L, OsMYB55, OsMYB61-L, MYB55, MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, OsMYB2P-1 | ||||||||||
| DNA seq | agagaaggtcaggctgtcaccagaaagtcctttttccccggctagctcctgcatgcagctgatgagcgtcctgcatggagaagaaaagaacagatggtgacactgaattccaagagtgagtatcacttttattttaattgatacatactacatacatacagacaccggcgatgtgctaattgctccaaaaatctccagaaaaaacatatagtacaaatgcatatataccacaacagacaatgcaagcctccagaacggatgggatccgtctgcatgaggaatcaaaggacaaggatgatcagctggaaaccagattataaaatcatcaatcaatgccttttgattcgccgcgcgcttgtttaatgtttaatgggggggatgagtatccgctgtcacatgggcacaggaggggggatggatgccattacaatcctaatcatggaatcatggattaaacttttCccccttttcctttcatcaggataccaggccataatacttgcattgactagctcatttgggatgaatactataacttcaaatgtttttgtctctgtcctccaggcccttgcatcttttcTtttctttttttccagtacttctaaattccaagaaacacaaccggcctctccacaatgatcaatcgatcgaccgatcggtgttcccattgacggcagagacagtcagcagacaaatcattattcctgtacctgcgcaattatctgttcaattatggggaagctcaccgttctgaagaagaacactgatcaccacagacacgctcaacgtgcttcatctcggattggagaagcagatacggatttccgaacgaaaattgctagggtatctagctgcatgcccatggtaaacaaaggggagaagatgccctctgtcctggaataccaacatctgatgccaccacttctttttccccaggaccccaactgtgatgattgacggggagcttttccacagagacaagtgatccagtgacttacctgaaaagcaagagaaataaaggacaatacttaggtctgacacataaaatcttgcaggtgggagaaaatgaggtgcacatgcaagcacgcacgcacagcacaacacagcacagcacagcagctaacaaaattgggacttaattggcaacagaagaaaggtggacatggcctcccagtcccagcactccagcagtagtctgctgctttctttgcccctgcatgaaacactcgtgatgtacaagtagctgcaggaaagAaaataaaaggagaggAaaaaaggatttaaaagagagaaaatttctgatttctagtagaaaatggtgtactggctgggtcgcagtcaatcaacatgggagcaagaacatcagtccttgtcctaataatgtaaaccctgatggactggttttactttaactggctgactgattctcatcaaacaagtacactggaaatgggaaacgagataaaaggaaaaaaaaaaaaggcgaagaaggaagaagatggaacagttttttgtacaaggccgcgacaattaaaatatcggtggagacggacggcaaccccaccagttttggcaccggacatagattcttaggagatgacgagacagaccccccacacgcacagccaggaagcaaccaaggcaaggggttaaacctcccttcccacaaccaccaccaccaccaccaccacctttaaaagaaggtgctaaagggggtgtcctgcaaagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggtctcagccgaagccccaatcattcatcgttatataggtcactataccctcccttgcatttcccaccaccaccccttgaagccatgaatcgctgaagaagtcgcctgcgctactgctaccaccagggaaggattagctgcgcagaattgtgcgagcgaaacctgccagccgtgcgaatttcaagctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaattgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaagcatggccatggctgctggagTtctGttcctaaacttgcaggtgagctcaaacaagtcttctgcatttcctcgtttcaattaccagcttccgattcttctcttatctcttctccaacaattctactccctgaattggtccaaaattctaaatttcttcatggttaattgttgcagggctccaaaggtgcggcaagagctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtaaacttcaatctcaattggcagtaccaaaattcaggactagtaactgcaaggcaacactttgatacatcaactaacacagcccttctatttttccatgagaaggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttcCAGcaaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatttccaccgtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcattggcaacaccccgttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctgatttgctccatggaacctttgctgaggcgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagagagccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaacagctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttgaacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcaaaaacttgtaactctcgcatattgattggcaggcaaaacactgaagtgtttgatgttttgacacagaatcgacctcaacactttctcctcacttaaagatcctacagtgtcatggaaaagacagctctggccttacgagtagcagaagaagggatagaaaagtacgttctagagtctccctcttttctcttgaaatttgctgttttttgtacacgacaactcaacttttggatacttgagttttggttcactctgtttatcaaataaatatagacacgcatgggcaaaacatgtgtgggtagctctcacaaaccatacaagtagtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgtatttttatttcttttgagaagttgccgacaaagtgcagttgtatatttgtaaaggaaaaaaattggaacattgacccaagagttattttc
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| CDS seq | atggggaggcattcttgctgctacaagcagaaattgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaagcatggccatggctgctggagTtctGttcctaaacttgcagggctccaaaggtgcggcaagagctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttcCAGcaaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatttccaccgtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcattggcaacaccccgttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctgatttgctccatggaacctttgctgaggcgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagagagccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaacagctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttgaacatatctag
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| Protein seq | MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDVNPSSAGALGNLSHLLSETAQSSMLLPVYDKNHPETASLPRPKVPPKELFLDQLTAGHESPSSCRSSGPTLYFPFQQPLGYSNECGTGDGASMNSLWFNQNDFNCSTISTVMPPVSPSALSTSMGLNLPPENPRHGGTGIGNTPFYWDGSNPSSSGSTGSSGSNSMGFEPQSTTSILENSVFPWTDIGQEKDTRVHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNMEGICASWFQNQQPQQQLQAASDMYDKDLQRLPLSFEHI |
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| Function | Transcription factor MYB61 [UniProtKB/Swiss-Prot:Q8VZQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0002800 | OsLima_05g0002800.01 | Chr05 | 2328732 | 2332792 | + | NAM | ||
| CDS seq | atggggaggcattcttgctgctacaagcagaaattgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaagcatggccatggctgctggagTtctGttcctaaacttgcagggctccaaaggtgcggcaagagctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttcCAGcaaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatttccaccgtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcattggcaacaccccgttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctgatttgctccatggaacctttgctgaggcgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagagagccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaacagctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttgaacatatctag
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| Protein seq | MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDVNPSSAGALGNLSHLLSETAQSSMLLPVYDKNHPETASLPRPKVPPKELFLDQLTAGHESPSSCRSSGPTLYFPFQQPLGYSNECGTGDGASMNSLWFNQNDFNCSTISTVMPPVSPSALSTSMGLNLPPENPRHGGTGIGNTPFYWDGSNPSSSGSTGSSGSNSMGFEPQSTTSILENSVFPWTDIGQEKDTRVHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNMEGICASWFQNQQPQQQLQAASDMYDKDLQRLPLSFEHI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.162489 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0140100 | RBH | 0.197155 | 0.134792 | 2.322661 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04820 | RBH | 0.132790 | 0.090294 | 0.595493 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0140100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002810 | RBH | 0.0 | 5.903128 | 13.295396 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002840 | RBH | 0.000000 | 4.613848 | 0.641171 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002800 | RBH | 0.0 | 16.799282 | 9.676608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002870 | RBH | 0.0 | 1.070493 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002870 | RBH | 0.000000 | 28.673101 | 10.575924 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0034500 | RBH | 7.920958 | 5.0134895 | 0.9836625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002680 | RBH | 0.000000 | 1.616526 | 0.477896 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0034500 | RBH | 14.8552265 | 0.1543335 | 3.1849715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012520 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002710 | RBH | 0.0 | 8.973114 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002820 | RBH | 0.0 | 15.830653 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002840 | RBH | 0.250783 | 0.920264 | 0.518869 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002850 | RBH | 0.000000 | 15.769109 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002730 | RBH | 0.000000 | 9.945308 | 6.709723 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002890 | RBH | 0.0 | 31.113678 | 6.568886 |
