Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0027140 | OGI:04094150 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:33411670-33413508 | ||||||||
| Gene Symbol | prx56 | ||||||||||
| DNA seq | atggcgctcctaatgggggcgaaacccaccgccccattctactcctccctgctccagtgctgcatcagctcctgcgcattccggcaaggcaagtccgtccacggcagggtcgccgccgcgtccgcctctcctccggacctgcacctgagcaccaagctcatcatcttctacgcgcggttcggcgacgtcgccgccgcccgcaaggtgttcgatggaatgccgcacaggagcgtcgtgtcctggacggccatggtctccggctacgccaggaacgggcgcccgcgggaggcgctggagctgttcgcgctcatgcgcgcgtcgggcgcgcggccgaaccagttcacgtacgggagcgcggccagcgcgtgcgcgggggccgggtgcgccaggagcggggagcaggtgcacgcgtgcgctgccaaggggaggtttgcgggcgacatgttcgtgcagagcgcgctcatggacatgcacctgaggtgcgggtccgtggaggatgcgcggcagctgttcgcggagatggggaagaaggatgtggtgtcctggaatgccctgatcagggggtttgtggaacgcgggcatgacggtgatgcgcttggattattctcttcaatgctgaaagaaggtatgccgtccctccttttgctttaacaatcttgagcatttttcctgtaatcatgctgcctattatgtcctagcatgaaattgcaaggtagtttttgctgatggtattggcactaaaattgaaagtgctttcttttttttacatcaaaataattgacagcgatgattcctgaccattacacgcttggaagtgctctaaaagcatgtggaatagtcggtgttgctgtcaatgttgagctaattcacagttgcatcatcaaattgggttactgggatgaaaaggttgtcatcggatcacttatcaactcttacgcaaaatgtcggagtatgagcagcgcaagagtgatatatgattccatctctgaaccagatctcgtgtcatcaaccgcactgatcagtgggtacactatggatagaaactacagtgaagatgcaatggagctcttctgtaaaattcatcggaagggtttatggattgatggtgttctattaagctcagtgctttgcctttgtgcaagcgttgcttctgcaagatttgggacacaaattcatgcatatatgtgcaagaagcagtctatgggtgatattgcattggacaatgctctggttgatatgtatgcaaaggcaggagaattttcagatgccaagcgtgcttttgatgaaatgccctatcggaatgtgatttcttggacgtcacttattactgcctgtggaagaaacggttctggagaagatgctgtgactctttttaataggatggtggaagatggtgttaggccaaacgatgtgacattcctttctcttctatctgcatgtggtcattgtggtttgacaaacaaagggatggagtactttacttccatgatgagcaggtatggtattgatccaagagctgagcattacagctctgctattgaccttcttgctcgtggaggccagttagaagatgcatggaaacttgtccagaagacaaacttaaaacccaactcatcaatgctgggtgcaatgcttggagcctgtaaattgcatggaaacatgcttcttggagaaactgcagccaagaacctttttagtatagatcctgggagttctgtaaactatgctgttcttgcaaacatgtatgcagaatgtagtctatgggaggatgcacagaggacgagagaagtaatagatgaaacaacagatggaaaggaagttggtttcagtgtcatctga
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| CDS seq | atggcgctcctaatgggggcgaaacccaccgccccattctactcctccctgctccagtgctgcatcagctcctgcgcattccggcaaggcaagtccgtccacggcagggtcgccgccgcgtccgcctctcctccggacctgcacctgagcaccaagctcatcatcttctacgcgcggttcggcgacgtcgccgccgcccgcaaggtgttcgatggaatgccgcacaggagcgtcgtgtcctggacggccatggtctccggctacgccaggaacgggcgcccgcgggaggcgctggagctgttcgcgctcatgcgcgcgtcgggcgcgcggccgaaccagttcacgtacgggagcgcggccagcgcgtgcgcgggggccgggtgcgccaggagcggggagcaggtgcacgcgtgcgctgccaaggggaggtttgcgggcgacatgttcgtgcagagcgcgctcatggacatgcacctgaggtgcgggtccgtggaggatgcgcggcagctgttcgcggagatggggaagaaggatgtggtgtcctggaatgccctgatcagggggtttgtggaacgcgggcatgacggtgatgcgcttggattattctcttcaatgctgaaagaagatctcgtgtcatcaaccgcactgatcagtgggtacactatggatagaaactacagtgaagatgcaatggagctcttctgtaaaattcatcggaagggtttatggattgatggtgttctattaagctcagtgctttgcctttgtgcaagcgttgcttctgcaagatttgggacacaaattcatgcatatatgtgcaagaagcagtctatgggtgatattgcattggacaatgctctggttgatatgtatgcaaaggcaggagaattttcagatgccaagcgtgcttttgatgaaatgccctatcggaatgtgatttcttggacgtcacttattactgcctgtggaagaaacggttctggagaagatgctgtgactctttttaataggatggtggaagatggtgttaggccaaacgatgtgacattcctttctcttctatctgcatgtggtcattgtggtttgacaaacaaagggatggagtactttacttccatgatgagcaggtatggtattgatccaagagctgagcattacagctctgctattgaccttcttgctcgtggaggccagttagaagatgcatggaaacttgtccagaagacaaacttaaaacccaactcatcaatgctgggtgcaatgcttggagcctgtaaattgcatggaaacatgcttcttggagaaactgcagccaagaacctttttagtatagatcctgggagttctgtaaactatgctgttcttgcaaacatgtatgcagaatgtagtctatgggaggatgcacagaggacgagagaagtaatagatgaaacaacagatggaaaggaagttggtttcagtgtcatctga
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| Protein seq | MALLMGAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVIDETTDGKEVGFSVI |
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| Function | Pentatricopeptide repeat-containing protein At3g20730 [UniProtKB/Swiss-Prot:Q9LT48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027140 | OsLima_04g0027140.01 | Chr04 | 33411670 | 33413508 | + | NAM | ||
| CDS seq | atggcgctcctaatgggggcgaaacccaccgccccattctactcctccctgctccagtgctgcatcagctcctgcgcattccggcaaggcaagtccgtccacggcagggtcgccgccgcgtccgcctctcctccggacctgcacctgagcaccaagctcatcatcttctacgcgcggttcggcgacgtcgccgccgcccgcaaggtgttcgatggaatgccgcacaggagcgtcgtgtcctggacggccatggtctccggctacgccaggaacgggcgcccgcgggaggcgctggagctgttcgcgctcatgcgcgcgtcgggcgcgcggccgaaccagttcacgtacgggagcgcggccagcgcgtgcgcgggggccgggtgcgccaggagcggggagcaggtgcacgcgtgcgctgccaaggggaggtttgcgggcgacatgttcgtgcagagcgcgctcatggacatgcacctgaggtgcgggtccgtggaggatgcgcggcagctgttcgcggagatggggaagaaggatgtggtgtcctggaatgccctgatcagggggtttgtggaacgcgggcatgacggtgatgcgcttggattattctcttcaatgctgaaagaagatctcgtgtcatcaaccgcactgatcagtgggtacactatggatagaaactacagtgaagatgcaatggagctcttctgtaaaattcatcggaagggtttatggattgatggtgttctattaagctcagtgctttgcctttgtgcaagcgttgcttctgcaagatttgggacacaaattcatgcatatatgtgcaagaagcagtctatgggtgatattgcattggacaatgctctggttgatatgtatgcaaaggcaggagaattttcagatgccaagcgtgcttttgatgaaatgccctatcggaatgtgatttcttggacgtcacttattactgcctgtggaagaaacggttctggagaagatgctgtgactctttttaataggatggtggaagatggtgttaggccaaacgatgtgacattcctttctcttctatctgcatgtggtcattgtggtttgacaaacaaagggatggagtactttacttccatgatgagcaggtatggtattgatccaagagctgagcattacagctctgctattgaccttcttgctcgtggaggccagttagaagatgcatggaaacttgtccagaagacaaacttaaaacccaactcatcaatgctgggtgcaatgcttggagcctgtaaattgcatggaaacatgcttcttggagaaactgcagccaagaacctttttagtatagatcctgggagttctgtaaactatgctgttcttgcaaacatgtatgcagaatgtagtctatgggaggatgcacagaggacgagagaagtaatagatgaaacaacagatggaaaggaagttggtttcagtgtcatctga
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| Protein seq | MALLMGAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVIDETTDGKEVGFSVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628200 | RBH | 0.792670 | 0.490270 | 0.570278 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53630 | RBH | 0.171437 | 0.295733 | 0.309417 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0628200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027530 | RBH | 0.000000 | 1.483817 | 0.985000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028310 | RBH | 0.0 | 0.0 | 0.596139 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028030 | SBH | 0.000000 | 2.685291 | 2.655260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027800 | RBH | 0.021298 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028050 | RBH | 0.257029 | 3.577488 | 2.603250 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0504300 | RBH | 0.6044875 | 2.2685025 | 0.626502 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026740 | RBH | 0.079403 | 0.0 | 0.397540 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0508300 | SBH | 0.720227 | 1.53749 | 6.414073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005690 | RBH | 0.863107 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027000 | RBH | 0.0 | 1.708247 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027030 | RBH | 0.0 | 12.018981 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027560 | RBH | 0.121027 | 0.0 | 0.341765 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027650 | RBH | 0.073138 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026940 | RBH | 0.166059 | 0.000000 | 1.032663 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026860 | RBH | 0.420042 | 0.0 | 0.694143 |
