Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0026380 | OGI:04092490 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32855502-32859352 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCGCCTCGCGCGCGGGGGCTCCGGCGAACGGGCCGGCCGCGCCTCGTCTTGACCTCCCCTCCTTCCCGTCGCCGAGCTAGCCTCTCCACGCTGCGCGGGGCCTCCTCCGGCGAGCAGGCTGGGCCTCGGGCCTCGGGGCCTCATTCCACCGCCTTGCGTGGCTGCGTCTTGGTTCGGATCGGCTTGAAGGTATTTGCATATGCATATCTCTCTCGTAGTCTCAGCTCTCTCCCGCTTGCGTTTAGTCTGGAGATCCATCCGGACTGGTGGTGACTTTTTCTTTTTTGCAACGCGGGAATTTTTGTCTGGTTGTGATTGCTTACGGAATTCCCGTGAAGGTGCTGCGTTCCAAAGGAACCCTTCGATTGATTGATTTATTTCAGTCGAATTAACCGTCCGTTTTGCTCCTGATGATTTCCTTCGTTTGATTTTGATGCGCGGTCTTATTCCAGTTTGTTTTCACCCTTTTTTTTTTCCAAaatataaatatgcctcaattttgggttgttcatgcattagattttaattaatggggtgtgttatcttgtaattttagcttcgactgtgtgtatgcccgatcaaattttctagcaattttttttctaacctgtacttacgtgtaaatgcaatactgattcccccaaatgggtgaacgttgtacgcgttgtggtggctttcagtaccagagttGggggcagggaattctgaatttatacccgaatttgccggtacaacttttaatttgcaagtcacatttgcaggtatggacttcggtgattctagacgcaagcctagtgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtggtacgtgccgaatctctccacaactagcccacttcactgtcgaattgtcgattgctgttgagtcctcacttctcgttgttgtattgttcaaacttgatttaattgtgacacgtaagtttcatttggaacaatcgcatattgtctgacagaaaggggttcctttaacatgattggaagaaacacattgatcgtccattccatttgatgaatccactgttcatttatctgtgttctgtgctagtagtggttattttctatgcaccatcactagtttttgataaagcacattcataattccattggaagcaaagctgtttttgtgaagcagattgtcatctgatctagttttcatgatacattcacatgttctgtagttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattggatcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggtaaatttcttattccagcttcatgtttttattcctaacttaaagagcttttatgttacagcaatttcttccatgtgatctttacaggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttcactacaatgcgaactttaacaccttattatagccattcttccatacatttatgtgttggtgtgatctgttttgcacttaaccaatagccaggttgacaaaatattttcagaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtaaggcattgatgtgctaatgttcttgtattcatttgtaagttaggcactacatgatgttacataaatggtggttatttatatattgtatgttcatgtgcaatcctttgatgtgttcagagcaatgcaaactgctcttggctatctctactattaaacaaaactgctaaacatggcaatctatattgaaaacgtactatatagtgaaaatggaaaaatataggcattccatcTttttcaatgttggtagTtttttgccgataacatacttttggcatgagcaatttgaactgtgaagattagtgtgaaagactgcctaatgtaaatgtatgtgattttagttgataatttgttttcctttttgtgtatccttcagaaataatctgttgttaatgctgttactattacatgatctgtgctaatgctgcaataacaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcaCataaTGttaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcaggttggcttatcaatgcatggacttcttatctcaaagtttaaagaatatcatgcacaattcactgattctagacaatcttttaaccaatgcagaaccctatcaatccatatggaaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaaggtcctcctctcctatagcctatactaaaatttaattcgtagagaaaactcacttcgttttcttttgaattagatacttcaacgtcattggatcagacccagaggggcggttaggggaagctccacggccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggtactgaacatgctcacttcagcatgtgtcattttgacttttcacatggtaacatactatggtatatgacttttgtcctgctgtaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggttgtgaaaaatatcactaatcatctcaacacatgcacaattatgtactcatttctctgcatgtatttccttgtttctgattgtgctttgctcatgattttatcaggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatGggtatggatcggcctgattcagggtttaatagattcagacttaaggtacacagattctcaggtccatgtgcagaaatcatatatccttcagaaaatcggttcttcagcacaaacatagtgccaggcacagaagtgttctgaatttttttttttttggcagcatttggaagaagatacagaaagaatggcccctctatccctggcttaggatcatacatatagTTttttttttctttgacatttttttaatcttttctactcgttAaagcataatataataaccaatagaaaatgtgttgtagacaaggtagataactatcatgtatgaacgttcatggtgttgaatgaaaggatatatgaataagtagatgtttgcttattattggaagttaaatttccattttggcaagctcagcagttaaatatctagtatgtgaagcaaggggggactggggacaatgcattgctgtgcacaactcctggtctcacttgcaaaaacatttcttacatgtaactagagtacaagtggttggattataccgtatgtacatggaacgttaattcgcagctac
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| CDS seq | atggacttcggtgattctagacgcaagcctagtgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtgttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattggatcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttcactacaatgcgaactttaacaccttattatagccattcttccatacatttatgtgttgaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcaCataaTGttaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcagaaccctatcaatccatatggaaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaagatacttcaacgtcattggatcagacccagaggggcggttaggggaagctccacggccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatGggtatggatcggcctga
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| Protein seq | MDFGDSRRKPSVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVSFFTTMRTLTPYYSHSSIHLCVENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAHNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNGYGSA |
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| Function | Probable UDP-arabinose 4-epimerase 2 [UniProtKB/Swiss-Prot:Q8H0B6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0026380 | OsLima_04g0026380.01 | Chr04 | 32855502 | 32859352 | + | NAM | ||
| CDS seq | atggacttcggtgattctagacgcaagcctagtgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtgttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattggatcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgttgacaaaatattttcagaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcaCataaTGttaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcagaaccctatcaatccatatggaaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaagatacttcaacgtcattggatcagacccagaggggcggttaggggaagctccacggccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatGggtatggatcggcctga
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| Protein seq | MDFGDSRRKPSVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAHNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNGYGSA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0026380 | OsLima_04g0026380.02 | Chr04 | 32855502 | 32859346 | + | NAM | ||
| CDS seq | atggacttcggtgattctagacgcaagcctagtgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtgttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattggatcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttcactacaatgcgaactttaacaccttattatagccattcttccatacatttatgtgttgaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcaCataaTGttaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcagaaccctatcaatccatatggaaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaagatacttcaacgtcattggatcagacccagaggggcggttaggggaagctccacggccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatGggtatggatcggcctga
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| Protein seq | MDFGDSRRKPSVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVSFFTTMRTLTPYYSHSSIHLCVENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAHNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNGYGSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 32855691 | 32856264 | + | OsLima_04g0026380.02 | OsLima_04g0026380.02,OsLima_04g0026380.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.126181 | 0.461234 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0618200 | RBH | 3.334786 | 2.647196 | 14.101160 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52730 | RBH | 2.220488 | 1.761368 | 3.576216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0618200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026670 | RBH | 0.859168 | 17.580019 | 16.486452 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027450 | RBH | 0.447785 | 5.222853 | 9.744100 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027190 | RBH | 0.685521 | 22.032419 | 20.407621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026870 | RBH | 0.060098 | 0.859038 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027160 | RBH | 7.119395 | 50.388538 | 35.801857 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0494500 | RBH | 2.962528 | 21.2363985 | 6.2642215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025970 | RBH | 0.099515 | 2.196870 | 3.910565 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0498500 | RBH | 5.9289505 | 28.80435 | 3.5350355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0001960 | RBH | 0.434001 | 0.816304 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026210 | RBH | 0.325266 | 17.493162 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026260 | RBH | 1.170642 | 46.765865 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026720 | RBH | 1.095906 | 2.007362 | 2.866016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026890 | RBH | 0.069288 | 11.403492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026120 | RBH | 0.362927 | 11.202867 | 7.101348 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025980 | SBH | 0.0 | 41.438747 | 27.342318 |
