Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022880 | OGI:04084500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29862393-29864686 | ||||||||
| Gene Symbol | OsbHLH075 | ||||||||||
| DNA seq | tgaaaaacatagagtaagtaaacagtaaatcttcccaacgtagccgttgcacgggcagtaagtgagacaaggctgtgagctgtctaatgtgtatggggctcatcggtaaaagtagttcctgtacgccggagcccagcactccggcaggatgctatcacagtattcttgagaggtccaggaaacagggaccaagcaaagccctctgcccctcaaatcatgctccagacctgccttcctcttcccttCccctccccagtgaatatgaccctgaagaaaagatggtggtaaatgtatatgctccgtcattcagtcctggcctcgctgtgcttttagaatttgcaatacatcgttttaataggaaaaactaccttgtttgtgctgtttgtcatatacggttggctgaataactgcaccaaatcagaaaaatagaagggttattcgtcagcttatctctgtgggagcatgacttattaggttcagaaaaggttggcaaatcagtaatagttgtgccagtacaaatgtactttctttatgttctttagtgtcacgaaaacgacatactaaacttggacatgacttggaggtccactggcaaaaggcacaaagcaagaggtcaatataccaaatgcccaaatgcgtaatctgaaataaggcaaaaggttgaagtagtcggtgcaacgatgaacgatccatatatctcgatacagtgaatcgctcagctgcagtgctcatggcagtatcttctactccgtactactttatagaaacttcgatctgagacaaaacacacagggggcatgtgcaaaacagcaaaaaaggattgtgctgatggtgtcacctgtatttgttcatgaagaaatttgatgtaggttatggtttccaacagaacagacgctgtatccgtctgttaaaatgaaatatgtaatgattaacggccaaaattgaagaagagaaaatacttttgcttcttacattagtttggaagcataaagtgtgcgtttaatgatctcatacggtcataccttcccgaaaggtgacacaatctgctgcaaagccgtgatcttctcccccagcttcactttgggtgattgatgctgcgtgtggtttcgaaacaagttcttcaaatgccaactcctcagaacgatttgcaaagtcaatccactattctgtcattgttagttaccttgggagaagatgtactatgtgaagtttctgacttgaacttcttcgctttgcctcctcttacctctgatagtttcttcttgttacgatcacttccactgctactacaagatcttgcctgcaagaattgtacatgtaaggttttttcacaccggcttctacttatttgaggatacattacaattgttcagtcttaccagccgtgtaatttcttgctcccttgtgtctgtagacatcaattcttctgcggttgctgacctgtggccactgaaagagctgacgtccggagaagttctcatgcaaaacgaagcctccagtcctgagccgtccagacaaactcccccaaaccctataccagactgatcgagaacactagtgggaatcagttgctgcagaaatgcggccatgggagatccaacctcctgctgctggatgctccgttgcaccacagcgctgttcttccccagctggtacgccagcagcggcgagctagcgatgccatgctcgattgaactaacaccagcgtgctggccgttgttgtccaggctataggcggcgacagctgatgcggccatgccgtcgctgtccatccccttgaggtagtcgcatgccacggggacgccctcgaacacttcgggagccatcacgtagtctctcgtgttgtcaagcaaagaaacgaggctctccctgaagctgtcgtcgttgctcccatgctcttcttccctgctactgaaaacatgcattgcacgtctcgtctgacttgtcaattgtaacttaactgAATaataataatacgagaatcaaagtgttgtttagatgtgcatatactcacaggacgctctggttccagaggtgaccgcctgggtgctcgttggggaggcgctcgtcggccgccggcgacgatgagaaggctgtgtcacgggcgacggcaaagagtgcatgcatctgtatgatccgatgagtttccccgcacgccgcggctggttggtgaagtggaggagaagctgcagcgaccagcccgtggctccgggtgcttctcgggttatgaaatatacgacgatatgcagctgggtgcagtgcacacccgtgcatgcgtgtatcctatattccta
More
|
||||||||||
| CDS seq | atgcacgggtgtgcactgcacccagctgcatatcgtcgtatatttcataacccgagaagcacccggagccacgggctggtcgctgcagcttctcctccacttcaccaaccagccgcggcgtgcggggaaactcatcggatcatacagatgcatgcactctttgccgtcgcccgtgacacagccttctcatcgtcgccggcggccgacgagcgcctccccaacgagcacccaggcggtcacctctggaaccagagcgtccttagcagggaagaagagcatgggagcaacgacgacagcttcagggagagcctcgtttctttgcttgacaacacgagagactacgtgatggctcccgaagtgttcgagggcgtccccgtggcatgcgactacctcaaggggatggacagcgacggcatggccgcatcagctgtcgccgcctatagcctggacaacaacggccagcacgctggtgttagttcaatcgagcatggcatcgctagctcgccgctgctggcgtaccagctggggaagaacagcgctgtggtgcaacggagcatccagcagcaggaggttggatctcccatggccgcatttctgcagcaactgattcccactagtgttctcgatcagtctggtatagggtttgggggagtttgtctggacggctcaggactggaggcttcgttttgcatgagaacttctccggacgtcagctctttcagtggccacaggtcagcaaccgcagaagaattgatgtctacagacacaagggagcaagaaattacacggctggcaagatcttgtagtagcagtggaagtgatcgtaacaagaagaaactatcagaggtaagaggaggcaaagcgaagaagttcaagtcagaaacttcacatagtacatcttctcccaagcatcaatcacccaaagtgaagctgggggagaagatcacggctttgcagcagattgtgtcacctttcgggaagacggatacagcgtctgttctgttggaaaccataacctacatcaaatttcttcatgaacaaatacagttattcagccaaccgtatatgacaaacagcacaaacaagggtcatattcactggggagggGaagggaagaggaaggcaggtctggagcatgatttgaggggcagagggctttgcttggtccctgtttcctggacctctcaagaatactgtgatagcatcctgccggagtgctgggctccggcgtacaggaactacttttaccgatga
More
|
||||||||||
| Protein seq | MHGCALHPAAYRRIFHNPRSTRSHGLVAAASPPLHQPAAACGETHRIIQMHALFAVARDTAFSSSPAADERLPNEHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEVFEGVPVACDYLKGMDSDGMAASAVAAYSLDNNGQHAGVSSIEHGIASSPLLAYQLGKNSAVVQRSIQQQEVGSPMAAFLQQLIPTSVLDQSGIGFGGVCLDGSGLEASFCMRTSPDVSSFSGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR |
||||||||||
| Function | Transcription factor bHLH111 [UniProtKB/Swiss-Prot:Q9FYJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022880 | OsLima_04g0022880.01 | Chr04 | 29862393 | 29864686 | - | NAM | ||
| CDS seq | atgcacgggtgtgcactgcacccagctgcatatcgtcgtatatttcataacccgagaagcacccggagccacgggctggtcgctgcagcttctcctccacttcaccaaccagccgcggcgtgcggggaaactcatcggatcatacagatgcatgcactctttgccgtcgcccgtgacacagccttctcatcgtcgccggcggccgacgagcgcctccccaacgagcacccaggcggtcacctctggaaccagagcgtccttagcagggaagaagagcatgggagcaacgacgacagcttcagggagagcctcgtttctttgcttgacaacacgagagactacgtgatggctcccgaagtgttcgagggcgtccccgtggcatgcgactacctcaaggggatggacagcgacggcatggccgcatcagctgtcgccgcctatagcctggacaacaacggccagcacgctggtgttagttcaatcgagcatggcatcgctagctcgccgctgctggcgtaccagctggggaagaacagcgctgtggtgcaacggagcatccagcagcaggaggttggatctcccatggccgcatttctgcagcaactgattcccactagtgttctcgatcagtctggtatagggtttgggggagtttgtctggacggctcaggactggaggcttcgttttgcatgagaacttctccggacgtcagctctttcagtggccacaggtcagcaaccgcagaagaattgatgtctacagacacaagggagcaagaaattacacggctggcaagatcttgtagtagcagtggaagtgatcgtaacaagaagaaactatcagaggtaagaggaggcaaagcgaagaagttcaagtcagaaacttcacatagtacatcttctcccaagcatcaatcacccaaagtgaagctgggggagaagatcacggctttgcagcagattgtgtcacctttcgggaagacggatacagcgtctgttctgttggaaaccataacctacatcaaatttcttcatgaacaaatacagttattcagccaaccgtatatgacaaacagcacaaacaagggtcatattcactggggagggGaagggaagaggaaggcaggtctggagcatgatttgaggggcagagggctttgcttggtccctgtttcctggacctctcaagaatactgtgatagcatcctgccggagtgctgggctccggcgtacaggaactacttttaccgatga
More
|
|||||||
| Protein seq | MHGCALHPAAYRRIFHNPRSTRSHGLVAAASPPLHQPAAACGETHRIIQMHALFAVARDTAFSSSPAADERLPNEHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEVFEGVPVACDYLKGMDSDGMAASAVAAYSLDNNGQHAGVSSIEHGIASSPLLAYQLGKNSAVVQRSIQQQEVGSPMAAFLQQLIPTSVLDQSGIGFGGVCLDGSGLEASFCMRTSPDVSSFSGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.480799 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0565900 | RBH | 0.0 | 0.160703 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47810 | RBH | 0.0 | 0.107810 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0565900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023230 | RBH | 0.000000 | 27.208097 | 0.149154 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023970 | RBH | 0.0 | 2.150577 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023690 | RBH | 0.0 | 7.898371 | 0.844313 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023450 | RBH | 0.0 | 0.220811 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023570 | RBH | 0.000000 | 14.325855 | 4.172019 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0446600 | RBH | 0.0844385 | 21.3970575 | 0.348171 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022370 | RBH | 0.0 | 0.790305 | 0.078003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0450300 | RBH | 0.0878835 | 13.390713 | 0.2525515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028350 | RBH | 0.055524 | 0.877263 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022710 | RBH | 0.0 | 10.157200 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022830 | RBH | 0.0 | 19.924377 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023230 | RBH | 0.0 | 0.616262 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023420 | RBH | 0.0 | 5.948256 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022650 | RBH | 0.000000 | 0.000000 | 0.490358 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022530 | RBH | 0.701844 | 79.430473 | 3.377867 |
