Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022800 | OGI:04084330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29794242-29797192 | ||||||||
| Gene Symbol | OsHMGB707 | ||||||||||
| DNA seq | gcacctcgcccttcccttttccccaaccaaccaagacacaccacccaattcccctctcctcttcgctctcatctccgcttccagccagccactgcaaccctaaccctccgcaaagccctaccccccttccgccaccatgggcaaggccgacgccgacgccgagtaagtcacccgcaaccttgctctctccctcctcttgtggtttgggtcggtggaagcgagggccgatttgcctccgttttttttttttttttgtttctgctgctgctgctgttgtttctgatgcgcgtggctccctccgccgttgcaggttcaaggccgccggcaagcgcaagaaggccggaggcgccggcaagcccaagcgcggcctcaccccgttcttcgccttcctgtgagccttccctccctccgtctgcttccgcctttcgtgcctccagatctacgtttttccccctttctgaaatttgtggattttttttgaatttttttttttggtcgctggtggtgtgtgtggcagggctgagttcaggccgcagtacatggagaagcacccaaacaccaagggcgtcgcagcggtgagtactctacctactctccgtctaccagatttgcttctagggtttcgtttctgtggctcatatgttgctcttgcttgctgattgtggtggatttaggtgaccaaggctgccggggagaagtggcgcgctatgtcggacgaggttagcagatgctggcagttgttgtactagcacgctttattatgcttctgtgcggggattcccgcaactgatatttgcacgtccaataagctgattacacttgtcgcatatcatgtgaaaaagcatattatatgcagttttctgagcttttagcagttattattagttatgacctgacgctttataaccacaaattatgccattcttcttcagtacacgtgctgtacagtggctttattgtctgttgcaacatgtatcgatccttagcatgcctgtgcagcaaagctatctagagtgctagctagactcatccatggtccatggatcacatcaagctcttacaggtaatgggtggagattctatacagctgtgaggttctttgagccatgtttttgggggaatgcactataggaagtaaaatcacttgacaaaaaaaatccagtgaaggtggcatgtcctttcaagtcgcaaatataactcccatgggatagaagttcaataacacaacttgtagttgttggtgagctctaagtcacagggaacgtggatcgtgggtgagttcctcgtcccgggaatttcgtcccggaacgaggaacgggaacgaagcggaacttcgttctgaaaacggaggggtcgtcgttccagcgatggaggaacgagaagggtggtaggatacgttgaacaaaaaaaaatgagaagtgcaactgagctacatatgcaaatataggatgatgatgtgagaggaactagcttgtagatctgaaaaacctttgtcaagaaaggaagaatgaatccatggctccttcatttaagtgcttgtattttctctagttatctagttatttataagtgaaattggatctatagcatccaaagttaacatttttgattttatagcaatggaagtttatggttcattttaatagcttccaaaactctctggtactgttcatagcactattgtcagttttctcctgtttctgttactttgaccgttgtgggggaactgaccccccaaccccaccctcacttggttactgtaaacttcacatcgtgtgcccggtgtggggagtactcatgctaagttgggatttctgggtcaacagcaggcaaggggacgggaaacagagaaaggcggtggaagtgctacaaacagtaacgggtggagattttagtggtattaaagtaatcagtgaattttcggtgctataaaaccaaaaagggtaactttggatgatgtagagccaatttgcctattttatattacagggcatgtgtcattgcttagttggactgcagatatttcagttaatttttaggaatggtgtcattacttaactgggctacattattgggttgacggctcccttcacgggatctggcctcaaccattgtctgcttatttaagggaaatatcaatatatggcatttaacagaataattaatatatccttgtttaggagaaagcgcaatatgggggcaagaagccagatggcgagagcaagcccgcggccgctagcaagaagaaggtattattgcctttgtgaattatgtgatactgaccttgtactcttgcattttatattcatttttgtgctgataaatgtgttctcttacattttcattaggagagcactagctctaagaaggctaaaactgatggtgcggaacaggagggagaaggttctgacaagtcgaagtctgatgttgaggatgatgagaatgatggcagtggcgaggtatatagaacattatatagtacatggcggtgtttagcactgaaatggaaatgaattatgcctgtgctttattgtcactaacctcatctcaatttcttccttgcaggacgagtagtagtaaatagcttagagagctgcagctatgcaaatcggtgttcactgcttagggctttagctttgctatgttactgttatccttgttatgtcctgttgtaaggaaaacgtgcgaatgaaggtactcctgggccgtggcatgctggaggtgtctctgtttaactagtagcgaagaaaatgccgaatactgttgactgcttttcttttgcgaacctccgcagcatgtgtaaactattttgcttattcactgatctgatgactagtccgcgattggctttctgttaatcgcgtctgctgtattcatattctgttgtgtactcagttcgtgccgttattggtgcatctttggtttatcttttttattcgttgtgccttttc
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| CDS seq | atgggcaaggccgacgccgacgccgagttcaaggccgccggcaagcgcaagaaggccggaggcgccggcaagcccaagcgcggcctcaccccgttcttcgccttcctggctgagttcaggccgcagtacatggagaagcacccaaacaccaagggcgtcgcagcggtgaccaaggctgccggggagaagtggcgcgctatgtcggacgaggagaaagcgcaatatgggggcaagaagccagatggcgagagcaagcccgcggccgctagcaagaagaaggagagcactagctctaagaaggctaaaactgatggtgcggaacaggagggagaaggttctgacaagtcgaagtctgatgttgaggatgatgagaatgatggcagtggcgaggtatatagaacattatatagtacatggcggtgtttagcactgaaatggaaatga
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| Protein seq | MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGEVYRTLYSTWRCLALKWK |
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| Function | HMG1/2-like protein [UniProtKB/Swiss-Prot:P40620] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022800 | OsLima_04g0022800.02 | Chr04 | 29794242 | 29797192 | + | NAM | ||
| CDS seq | atgggcaaggccgacgccgacgccgagttcaaggccgccggcaagcgcaagaaggccggaggcgccggcaagcccaagcgcggcctcaccccgttcttcgccttcctggctgagttcaggccgcagtacatggagaagcacccaaacaccaagggcgtcgcagcggtgaccaaggctgccggggagaagtggcgcgctatgtcggacgaggagaaagcgcaatatgggggcaagaagccagatggcgagagcaagcccgcggccgctagcaagaagaaggagagcactagctctaagaaggctaaaactgatggtgcggaacaggagggagaaggttctgacaagtcgaagtctgatgttgaggatgatgagaatgatggcagtggcgaggtatatagaacattatatagtacatggcggtgtttagcactgaaatggaaatga
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| Protein seq | MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGEVYRTLYSTWRCLALKWK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022800 | OsLima_04g0022800.01 | Chr04 | 29794242 | 29797192 | + | NAM | ||
| CDS seq | atgggcaaggccgacgccgacgccgagttcaaggccgccggcaagcgcaagaaggccggaggcgccggcaagcccaagcgcggcctcaccccgttcttcgccttcctggctgagttcaggccgcagtacatggagaagcacccaaacaccaagggcgtcgcagcggtgaccaaggctgccggggagaagtggcgcgctatgtcggacgaggagaaagcgcaatatgggggcaagaagccagatggcgagagcaagcccgcggccgctagcaagaagaaggagagcactagctctaagaaggctaaaactgatggtgcggaacaggagggagaaggttctgacaagtcgaagtctgatgttgaggatgatgagaatgatggcagtggcgaggacgagtag
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| Protein seq | MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPDGESKPAAASKKKESTSSKKAKTDGAEQEGEGSDKSKSDVEDDENDGSGEDE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022800 | OsLima_04g0022800.03 | Chr04 | 29794347 | 29797129 | + | IsoSeq | ||
| CDS seq | ctccgcaaagccctaccccccttccgccaccatgggcaaggccgacgccgacgccgagttcaaggccgccggcaagcgcaagaaggccggaggcgccggcaagcccaagcgcggcctcaccccgttcttcgccttcctgccgcagtacatggagaagcacccaaacaccaagggcgtcgcagcggtgaccaaggctgccggggagaagtggcgcgctatgtcggacgaggagaaagcgcaatatgggggcaagaagccagatggcgagagcaagcccgcggc
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| Protein seq | LRKALPPFRHHGQGRRRRRVQGRRQAQEGRRRRQAQARPHPVLRLPAAVHGEAPKHQGRRSGDQGCRGEVARYVGRGESAIWGQEARWREQARG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 29794632 | 29794771 | + | OsLima_04g0022800.01,OsLima_04g0022800.02 | OsLima_04g0022800.03,OsLima_04g0022800.01,OsLima_04g0022800.02 | All |
| RI | Chr04 | 29796590 | 29797192 | + | OsLima_04g0022800.02 | OsLima_04g0022800.01,OsLima_04g0022800.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.699120 | 3.025140 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0564600 | RBH | 33.948822 | 29.934723 | 51.769958 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47690 | RBH | 21.271360 | 18.431885 | 12.420938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0564600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023150 | RBH | 7.615887 | 39.903366 | 35.609138 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023880 | RBH | 3.451508 | 13.436146 | 20.426394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023600 | RBH | 17.490597 | 60.368782 | 56.554852 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023360 | RBH | 2.795564 | 2.081933 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023470 | RBH | 103.890709 | 104.503883 | 104.703888 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0445100 | RBH | 117.2197995 | 120.977978 | 203.1452635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022290 | RBH | 5.843108 | 7.174409 | 10.576740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0448900 | RBH | 91.828274 | 58.4338285 | 193.299011 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028290 | RBH | 0.256346 | 0.670458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022630 | RBH | 11.068860 | 76.576706 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022750 | RBH | 97.745903 | 65.160042 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023130 | RBH | 11.493622 | 10.925947 | 17.865454 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023340 | RBH | 4.181066 | 63.438293 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022560 | RBH | 6.484366 | 35.783127 | 33.370518 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022460 | RBH | 20.064535 | 158.110367 | 78.916801 |
