Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0028290 | OGI:02077060 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:29033195-29035138 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgcaccgcgcaacgctccgccccaaaaggccagacaacgcccgttgcgccgcctcccaaactccgcctcctcctcctccgctgcacccccgcaaaaaccctagcgcaccgacttcgcgatctccgcgccgcagccatgaagggcaaggccgacgcctccaagaagggcgagggcaggtaagatcctctctccggccgtctttgctgctgcgtatgggcggtggaggagggttttctggcggtggctgttgttggttcacatctgagcggttttgtgtttggtgttgttgttgttgttgttgttaggctcaaggccgccggcggcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctttcttcgtcttcatgtgagtttctcgctccctcgcccacgttttgctctgttcagatctagtacagatctgtcttgagtttttgtttaatttttgttgattttcttgaattttaatattttttgtggtttttattttttacttttgcaggtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaagagtgtcgccgccgtgagcttcctgacaccatcacctttttcgccactttttggctgatgtactttagatgtccaatttttttctcctctgttggttcattaggtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagtgagtttttctctgcagtgttcaaaaattagtacatgttcctattaagtgtgtgcatctgttatttagcatacatcatccatgagtatcactagaggactgtttaataattgttctggcctgtttgttaggaaaaagattgaattgctcctaaagtactagttgaatgaaaattgcaatttgtttttgaattctactcagtgaagcgcttaagtacacataagtaccatgggtggctattgatgtgacaatgtgccatatgtttttggcccttcgtgttaaattttattaggagaaggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggccaacttcgataagaaggtgatgatagaataattgtgcatcctaattatagagcccttcaagcgttaggcactaattggacttcttgaattacttcttcaggagagcacaagctcaaagaaagctaagacccatgatgatggagaaggctctgacaagtccaagtctgaggtcgacgatgaccaggatggtggtagcgatgaggtaatcattaaaggaacacccggtgccctattttagcttgaatgcccaatgaatttttactactgctagttgtgttgctaatgaacatttttaatttgctctttgcaggaaaatgaggacgatgaagagtaaatagtgtatccgggggcatgaggtagcaaactgtgtcttaggtcccctattagctttactagtttgctatcttcgaccctaagatgttgggaataggcgtgcgtgggtgtgaaggggaccgtttagaattatggtactcagaatgttttcctacagtggattagcaaagaaaaagcctgaatgccgcctgctgttctgttgcttttcttttgctaaccacttgtcacagaactttgtttcatttgctaatctagtagctattcagttagctttcttttcgttaatttcgttaattgcatattacatttggtgttatacacttgtttcgatgcatttggtttacctagcttaacacacatggtgaatccctcccattgctttctgctttcgttagatgcctgctgaagctacttcatagtggatggaattatattgttcgttgagtcggtaggcttctgtgatggtactcaattgtcattgcccgctcttatgctgttccatctaattgtgatctaagatttcgtatcaaatt
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| CDS seq | atgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcggcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctttcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaagagtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagagaaggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggccaacttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaaggctctgacaagtccaagtctgaggtcgacgatgaccaggatggtggtagcgatgaggaaaatgaggacgatgaagagtaa
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| Protein seq | MKGKADASKKGEGRLKAAGGAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGSDEENEDDEE |
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| Function | HMG1/2-like protein [UniProtKB/Swiss-Prot:P40620] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028290 | OsLima_02g0028290.01 | Chr02 | 29033195 | 29035138 | + | NAM | ||
| CDS seq | atgaagggcaaggccgacgcctccaagaagggcgagggcaggctcaaggccgccggcggcgccgggaagcggaagaaggccgccgctagcggcaagccgaagcgcccgccgtctgctttcttcgtcttcatgtctgagttcaggcaggagtaccaggcagcgcatcctggcaacaagagtgtcgccgccgtgagcaaggctgcaggggagaagtggcgagctatgtctgagcaagagaaggcaccttatgtggacaaggctggccaaaagaagcaggactacgagaagaccaaggccaacttcgataagaaggagagcacaagctcaaagaaagctaagacccatgatgatggagaaggctctgacaagtccaagtctgaggtcgacgatgaccaggatggtggtagcgatgaggaaaatgaggacgatgaagagtaa
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| Protein seq | MKGKADASKKGEGRLKAAGGAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEGSDKSKSEVDDDQDGGSDEENEDDEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.256346 | 0.670458 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0670400 | RBH | 3.726830 | 3.094824 | 11.836705 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44930 | RBH | 1.945717 | 1.627757 | 2.352360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028460 | RBH | 0.667406 | 0.0 | 16.509691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028550 | RBH | 0.000000 | 13.321198 | 5.127330 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028390 | RBH | 0.961290 | 29.295624 | 13.079723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028010 | RBH | 0.000000 | 1.582854 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028150 | RBH | 0.946506 | 39.595451 | 19.142626 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0442300 | RBH | 13.5667805 | 13.6748585 | 83.7810365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027960 | RBH | 0.059944 | 4.347363 | 2.273808 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0470300 | RBH | 14.8673725 | 5.441328 | 76.846718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022800 | RBH | 4.699120 | 3.025140 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028000 | RBH | 0.490389 | 44.201450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028300 | RBH | 0.000000 | 19.244528 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028170 | RBH | 0.413347 | 6.367971 | 3.209283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027860 | RBH | 0.0 | 21.268402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028430 | RBH | 0.000000 | 22.665466 | 7.482636 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028200 | RBH | 0.0 | 20.540562 | 21.979069 |
