Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0022470 | OGI:04051520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:29525871-29530673 | ||||||||
| Gene Symbol | SMG2, YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10 | ||||||||||
| DNA seq | aattaggtaatggttatagtcttatagatagatagctcacggtgcagatctgaagaacatgtacatgcgggagaagctagtttaaccaaggatcagattctttgtataaatttccagagtaactggtacagtgaataagttggctcattggctgagttctgctacaaaatactttcagtatgcagtttgacttgcagcagtagtttcaacctcaggtgagatattgtgtgagagaggatactgaatggctggactgtttctcctgtgcaaaatcttggctcttagttgaggttcctctgtacaatggcatcaggacgccaagaagaaaatagaaaattaagttacatataaaggcaagaggagtatacatgcggcgaactactacttcggaggtccttcaatctgcagggtaccaatatacagtcttgtcatttgacagatgttagtacgccaattgtagtatgcttccgggagttctgcctaacaggaatggacgatatctgctattcacattgaacaaaattagtaagagctattggtcaagacaaacttcagtgtcctgaaaataaatataacgactgaagcaaaaggttcaaatgtggattctgaactctcaaagtgcctgattcacctgagattctataagctgctaacaggtgaagtgcttcagaactacaccgaacaaagattatacacagcaaggcagcaagataatagacagcaaggcagcaagccccatgccagcaattaggaaaaaaatgtcactagccagtagtgctaccatctgagctgggatcagagtttttcttttcttttcttttggccacgttgagtttacaagctcaggaaacaacattgtgagccatgttgctttgacgtttaaagggagtgaatctagcaactagaatgccaataaaccagttcttaatctaatagtaagtgactaaagctgcaaatgatgtaggacagtcttgacttaacgtataatagaaagttatgaattgtgacaagtgaccatgcatacctttgccgacttgaattgtgttgatgacaacaaagattccatccattgccaactttagcttctacagacattagtgattttcttttcctcatactatgatacacttcaagccatcggatggctaaaaagcagccaaaccaccagttacctttcgaagctccaaaaaatgccatctgaatactgattcttgatattagttaccatgcttgagtccaaggtgtggagatccagacgtcaagtctaatgaaggatttagtttcacatgatccacaaaggcatgatgtgtgaaacgttcagatggtgacagcttatcacgcaaatcaaaaacatttccaagtctctttccaaactgagggcttagaatgtcagcttcagataccaccctctcctgaagcccctgagagatttgatgcactcgaataaattgcccaagatcaggatctgtaggccggctggcaaagagatcatccgggcttcttgatgggattgcaaatccctcgttgctgtaggttgattgcttcagatggttaaaaggaatagcaccattaccaccagacagaggcgtggaggtgcctgaagtagttctggggcttgaaataggagaaggtgacattctgccattggaatgttgtggggaccttgattttagcaaaggacttccacatggagaaactggacaagatatattgcttcgtatacggatatcactgtaaagttatttaaggattagaggctgcacagatatagggaagttcaccgcaaatcattttccaggtaagactgagtttcactgaagagaacacaagttactaccatatggctagtggtgagatactcattcatactagtgctaggatactcattcaacttagattagccatttttttaacagataatactttgtacttgctttattgcacacattgtttggacttaggactaatactattaataaacacaaattgggaaatgatgtacctgtgttttgaagaaaattttgcacctcttctctggtaaattgtctgaccctccaatcccaatgaggaaatatttcttgtatgcgcagccatctgaaaactcaaataataccaagcaaagtgaacaggccatgaattatccatgtaaccatgttatgtcagttatggcagtattcaagtggtaccttggcgctcggtctacaagatataacagccaaatgttccaatggttcagaaagaacagatttctctagtgatactgctttttgaacaaatgggtgctgcaaaagctccattgcagtgggacgttgagaaggatcacgttgcaggcactttctgatgaagtccttgcctggctctgaaaggtgatctggtattggtggaagttccttgctatttccgatcttgaacattgcagcaatctgcaggaaagaaaagaggggaaatgttcatgccaaagttgcttcggtgaaacttccaagtctcattacgagtcaaaagaaggaagtctttacatttcaagcacctttcataaaattgcatgcaagtaaatgatctttcaacattctacatcagacagtgataaattcttaaagaattcatgaaaagaacatttccatatcccattcactcatggcgaaaatcaccataattaggttatctatattatagaacaaataaactgtgcctcagaagtataatactaaccccttcatactggctccatggcggtttcgatgtagccatctccaggacagtgcatcccaaactccatatgtcaacagctaggttgcacccatttgagttttttataacctgcgtatgtgttgcatagtatgtgatgtacagaaatggcaataagatatgcatgaaacaaaaaattaacaagtaaagattttcagtgatacctctggagccatccaatatggactacccttaaaggagaaaggacactgctgcccattgatctgcataaagacacatttaatacgtattcatgagtaaaatacttccacattatacaaaaggcattttgtaacttatcaggagtgagggggctagcaaggtttcaagcacccttaacagcagtactcaatcaatgcattaaccagtgacaggagctacaagatcaagttgatatagatactgctatatatttttgaagagctcgatataattcaaacagttgtgactatgatatgaggcatagatgcagaaatggaatgacacggaaaataaagttcaattgacaaaagtcattttcaaaaaattaaagtgggcagaaaaacttacatgttttgccattccaaaatctgcaagcttaacacgaccactaggatctactagtatatttgcacctttaatatccctgcaaaattgtgatgaacaggacttataattacaccataattccaccgatacaaacaaaccaaagaaaagagagaaaaccaaagaaattgctacctatggactgtattcttcgcatgcaaataagccaaccctgaaagtatctgctgtgtgtagctgcgtattgcttgttcaccaagctgtccatactcttgcagaagtttatggatagatccaccagatacatactccaagtatatataaagcttatcatcaacctgtattggggcacaaataataagtgaagccAaaaaagaaaatcaaaagtggtacataaataactcattaatgaaatcctagatgctatcatgcaacttcttgttacccttggtaaagggaggaaaaaaataattatataatgaccaaacaggaaacaataattgagttaatggttccaagcaaaggaaaacctagcctatgtaaacagactgaaggcagcatttataccgtttctgatccatagtattgtacgatatttggatgctgtaggcggctcaatagtgatatttcctgagaaacAaaaaaagaaaaacagggaatcatatattgaacaggaaaagacataatctgaacttcttttgcaactgtaggttaaagcacaatcaacagactatacctgccccaactgctttgcactttcctttgatttaggatcatccaagaatagggtaacttctttcatcgcacacatttcaccactatcactgatataaatggtaaaaccacattaggaggacaaatcattgtggggacaccgaagttacatggccccaatcccctcccccagaatagagaacagtaagatagccaaaatagagctatattccgagttacatggtgtcttagctaagatcttacaaaaattccaagatgcttagtatattcatagtatgtcatatgaTttttttttaaaaaaatgaaatttcaaagttaggaatattcttacctgttaaagccaacatatacatgaccaaatgttccacggccaattagcttccccttcttccatcgtgacccaggacttggtggattctcagttctatcagggctgcgaggtactgaaataggactagttggagtggagttatttggataaaatgaactgtgagagatgctcagtggtggtaggggaagtttgtgagtttgcttcttcttcccatcatcatgacggtttgttggagattcaggggccatccctccagaccttggatgcaatggtgaaacacttccactatgcaccctcgaactagggccaggacttgtcattcttggacttggaattggtgaacactctgggctacttctgctgggctgccaaaagagctgggctagcatatcaccacccacagaattatgcccagatgtttgccctgaacctggactggaacattgacc
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| CDS seq | atgctagcccagctcttttggcagcccagcagaagtagcccagagtgttcaccaattccaagtccaagaatgacaagtcctggccctagttcgagggtgcatagtggaagtgtttcaccattgcatccaaggtctggagggatggcccctgaatctccaacaaaccgtcatgatgatgggaagaagaagcaaactcacaaacttcccctaccaccactgagcatctctcacagttcattttatccaaataactccactccaactagtcctatttcagtacctcgcagccctgatagaactgagaatccaccaagtcctgggtcacgatggaagaaggggaagctaattggccgtggaacatttggtcatgtatatgttggctttaacagtgatagtggtgaaatgtgtgcgatgaaagaagttaccctattcttggatgatcctaaatcaaaggaaagtgcaaagcagttggggcaggaaatatcactattgagccgcctacagcatccaaatatcgtacaatactatggatcagaaacggttgatgataagctttatatatacttggagtatgtatctggtggatctatccataaacttctgcaagagtatggacagcttggtgaacaagcaatacgcagctacacacagcagatactttcagggttggcttatttgcatgcgaagaatacagtccatagggatattaaaggtgcaaatatactagtagatcctagtggtcgtgttaagcttgcagattttggaatggcaaaacatatcaatgggcagcagtgtcctttctcctttaagggtagtccatattggatggctccagaggttataaaaaactcaaatgggtgcaacctagctgttgacatatggagtttgggatgcactgtcctggagatggctacatcgaaaccgccatggagccagtatgaagggattgctgcaatgttcaagatcggaaatagcaaggaacttccaccaataccagatcacctttcagagccaggcaaggacttcatcagaaagtgcctgcaacgtgatccttctcaacgtcccactgcaatggagcttttgcagcacccatttgttcaaaaagcagtatcactagagaaatctgttctttctgaaccattggaacatttggctgttatatcttgtagaccgagcgccaagatggctgcgcatacaagaaatatttcctcattgggattggagggtcagacaatttaccagagaagaggtgcaaaattttcttcaaaacacagtgatatccgtatacgaagcaatatatcttgtccagtttctccatgtggaagtcctttgctaaaatcaaggtccccacaacattccaatggcagaatgtcaccttctcctatttcaagccccagaactacttcaggcacctccacgcctctgtctggtggtaatggtgctattccttttaaccatctgaagcaatcaacctacagcaacgagggatttgcaatcccatcaagaagcccggatgatctctttgccagccggcctacagatcctgatcttgggcaatttattcgagtgcatcaaatctctcaggggcttcaggagagggtggtatctgaagctgacattctaagccctcagtttggaaagagacttggaaatgtttttgatttgcgtgataagctgtcaccatctgaacgtttcacacatcatgcctttgtggatcatgtgaaactaaatccttcattagacttgacgtctggatctccacaccttggactcaagcatggtaactaa
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| Protein seq | MLAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHSGSVSPLHPRSGGMAPESPTNRHDDGKKKQTHKLPLPPLSISHSSFYPNNSTPTSPISVPRSPDRTENPPSPGSRWKKGKLIGRGTFGHVYVGFNSDSGEMCAMKEVTLFLDDPKSKESAKQLGQEISLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQLGEQAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHINGQQCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATSKPPWSQYEGIAAMFKIGNSKELPPIPDHLSEPGKDFIRKCLQRDPSQRPTAMELLQHPFVQKAVSLEKSVLSEPLEHLAVISCRPSAKMAAHTRNISSLGLEGQTIYQRRGAKFSSKHSDIRIRSNISCPVSPCGSPLLKSRSPQHSNGRMSPSPISSPRTTSGTSTPLSGGNGAIPFNHLKQSTYSNEGFAIPSRSPDDLFASRPTDPDLGQFIRVHQISQGLQERVVSEADILSPQFGKRLGNVFDLRDKLSPSERFTHHAFVDHVKLNPSLDLTSGSPHLGLKHGN |
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| Function | Mitogen-activated protein kinase kinase kinase YODA [UniProtKB/Swiss-Prot:Q9CAD5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022470 | OsLima_04g0022470.01 | Chr04 | 29525871 | 29530673 | - | NAM | ||
| CDS seq | atgctagcccagctcttttggcagcccagcagaagtagcccagagtgttcaccaattccaagtccaagaatgacaagtcctggccctagttcgagggtgcatagtggaagtgtttcaccattgcatccaaggtctggagggatggcccctgaatctccaacaaaccgtcatgatgatgggaagaagaagcaaactcacaaacttcccctaccaccactgagcatctctcacagttcattttatccaaataactccactccaactagtcctatttcagtacctcgcagccctgatagaactgagaatccaccaagtcctgggtcacgatggaagaaggggaagctaattggccgtggaacatttggtcatgtatatgttggctttaacagtgatagtggtgaaatgtgtgcgatgaaagaagttaccctattcttggatgatcctaaatcaaaggaaagtgcaaagcagttggggcaggaaatatcactattgagccgcctacagcatccaaatatcgtacaatactatggatcagaaacggttgatgataagctttatatatacttggagtatgtatctggtggatctatccataaacttctgcaagagtatggacagcttggtgaacaagcaatacgcagctacacacagcagatactttcagggttggcttatttgcatgcgaagaatacagtccatagggatattaaaggtgcaaatatactagtagatcctagtggtcgtgttaagcttgcagattttggaatggcaaaacatatcaatgggcagcagtgtcctttctcctttaagggtagtccatattggatggctccagaggttataaaaaactcaaatgggtgcaacctagctgttgacatatggagtttgggatgcactgtcctggagatggctacatcgaaaccgccatggagccagtatgaagggattgctgcaatgttcaagatcggaaatagcaaggaacttccaccaataccagatcacctttcagagccaggcaaggacttcatcagaaagtgcctgcaacgtgatccttctcaacgtcccactgcaatggagcttttgcagcacccatttgttcaaaaagcagtatcactagagaaatctgttctttctgaaccattggaacatttggctgttatatcttgtagaccgagcgccaagatggctgcgcatacaagaaatatttcctcattgggattggagggtcagacaatttaccagagaagaggtgcaaaattttcttcaaaacacagtgatatccgtatacgaagcaatatatcttgtccagtttctccatgtggaagtcctttgctaaaatcaaggtccccacaacattccaatggcagaatgtcaccttctcctatttcaagccccagaactacttcaggcacctccacgcctctgtctggtggtaatggtgctattccttttaaccatctgaagcaatcaacctacagcaacgagggatttgcaatcccatcaagaagcccggatgatctctttgccagccggcctacagatcctgatcttgggcaatttattcgagtgcatcaaatctctcaggggcttcaggagagggtggtatctgaagctgacattctaagccctcagtttggaaagagacttggaaatgtttttgatttgcgtgataagctgtcaccatctgaacgtttcacacatcatgcctttgtggatcatgtgaaactaaatccttcattagacttgacgtctggatctccacaccttggactcaagcatggtaactaa
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| Protein seq | MLAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHSGSVSPLHPRSGGMAPESPTNRHDDGKKKQTHKLPLPPLSISHSSFYPNNSTPTSPISVPRSPDRTENPPSPGSRWKKGKLIGRGTFGHVYVGFNSDSGEMCAMKEVTLFLDDPKSKESAKQLGQEISLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQLGEQAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHINGQQCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATSKPPWSQYEGIAAMFKIGNSKELPPIPDHLSEPGKDFIRKCLQRDPSQRPTAMELLQHPFVQKAVSLEKSVLSEPLEHLAVISCRPSAKMAAHTRNISSLGLEGQTIYQRRGAKFSSKHSDIRIRSNISCPVSPCGSPLLKSRSPQHSNGRMSPSPISSPRTTSGTSTPLSGGNGAIPFNHLKQSTYSNEGFAIPSRSPDDLFASRPTDPDLGQFIRVHQISQGLQERVVSEADILSPQFGKRLGNVFDLRDKLSPSERFTHHAFVDHVKLNPSLDLTSGSPHLGLKHGN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0022470 | OsLima_04g0022470.02 | Chr04 | 29525871 | 29530673 | - | NAM | ||
| CDS seq | atgctagcccagctcttttggcagcccagcagaagtagcccagagtgttcaccaattccaagtccaagaatgacaagtcctggccctagttcgagggtgcatagtggaagtgtttcaccattgcatccaaggtctggagggatggcccctgaatctccaacaaaccgtcatgatgatgggaagaagaagcaaactcacaaacttcccctaccaccactgagcatctctcacagttcattttatccaaataactccactccaactagtcctatttcagtacctcgcagccctgatagaactgagaatccaccaagtcctgggtcacgatggaagaaggggaagctaattggccgtggaacatttggtcatgtatatgttggctttaacagtgatagtggtgaaatgtgtgcgatgaaagaagttaccctattcttggatgatcctaaatcaaaggaaagtgcaaagcagttggggcaggaaatatcactattgagccgcctacagcatccaaatatcgtacaatactatggatcagaaacggttgatgataagctttatatatacttggagtatgtatctggtggatctatccataaacttctgcaagagtatggacagcttggtgaacaagcaatacgcagctacacacagcagatactttcagggttggcttatttgcatgcgaagaatacagtccatagggatattaaaggtgcaaatatactagtagatcctagtggtcgtgttaagcttgcagattttggaatggcaaaacatatcaatgggcagcagtgtcctttctcctttaagggtagtccatattggatggctccagaggttataaaaaactcaaatgggtgcaacctagctgttgacatatggagtttgggatgcactgtcctggagatggctacatcgaaaccgccatggagccagtatgaagggattgctgcaatgttcaagatcggaaatagcaaggaacttccaccaataccagatcacctttcagagccaggcaaggacttcatcagaaagtgcctgcaacgtgatccttctcaacgtcccactgcaatggagcttttgcagcacccatttgttcaaaaagcagtatcactagagaaatctgttctttctgaaccattggaacatttggctgttatatcttgtagaccgagcgccaagatggctgcgcatacaagaaatatttcctcattgggattggagggtcagacaatttaccagagaagaggtgcaaaattttcttcaaaacacagtgatatccgtatacgaagcaatatatcttgtccagtttctccatgtggaagtcctttgctaaaatcaaggtccccacaacattccaatggcagaatgtcaccttctcctatttcaagccccagaactacttcaggcacctccacgcctctgtctggtggtaatggtgctattccttttaaccatctgaagcaatcaacctacagcaacgagggatttgcaatcccatcaagaagcccggatgatctctttgccagccggcctacagatcctgatcttgggcaatttattcgagtgcatcaaatctctcaggggcttcaggagagggtggtatctgaagctgacattctaagccctcagtttggaaagagacttggaaatgtttttgatttgcgtgataagctgtcaccatctgaacgtttcacacatcatgcctttgtggatcatgtgaaactaaatccttcattagacttgacgtctggatctccacaccttggactcaagcatggtaactaa
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| Protein seq | MLAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHSGSVSPLHPRSGGMAPESPTNRHDDGKKKQTHKLPLPPLSISHSSFYPNNSTPTSPISVPRSPDRTENPPSPGSRWKKGKLIGRGTFGHVYVGFNSDSGEMCAMKEVTLFLDDPKSKESAKQLGQEISLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQLGEQAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHINGQQCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATSKPPWSQYEGIAAMFKIGNSKELPPIPDHLSEPGKDFIRKCLQRDPSQRPTAMELLQHPFVQKAVSLEKSVLSEPLEHLAVISCRPSAKMAAHTRNISSLGLEGQTIYQRRGAKFSSKHSDIRIRSNISCPVSPCGSPLLKSRSPQHSNGRMSPSPISSPRTTSGTSTPLSGGNGAIPFNHLKQSTYSNEGFAIPSRSPDDLFASRPTDPDLGQFIRVHQISQGLQERVVSEADILSPQFGKRLGNVFDLRDKLSPSERFTHHAFVDHVKLNPSLDLTSGSPHLGLKHGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 29525871 | 29527601 | - | OsLima_04g0022470.01 | OsLima_04g0022470.02,OsLima_04g0022470.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.828618 | 0.418119 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0559800 | RBH | 4.103629 | 2.926267 | 7.387192 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47240 | RBH | 2.627278 | 1.867950 | 1.792481 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0559800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022800 | RBH | 0.850460 | 15.490653 | 9.023929 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023530 | RBH | 0.479786 | 5.495033 | 4.522870 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023250 | RBH | 1.601144 | 10.563928 | 16.130039 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023010 | RBH | 0.386566 | 0.368710 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023140 | RBH | 10.013247 | 26.710739 | 30.715740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0440400 | RBH | 6.1384685 | 15.6152545 | 36.9242155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021980 | RBH | 0.369866 | 1.489680 | 2.368813 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0249700 | SBH | 0.7989055 | 5.6074675 | 2.4663665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028000 | RBH | 0.126226 | 0.305857 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022300 | RBH | 1.015562 | 16.162384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022420 | RBH | 4.743787 | 30.233974 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021580 | RBH | 1.057945 | 0.0 | 2.146805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023010 | RBH | 0.565944 | 7.893522 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022220 | RBH | 0.874664 | 5.465657 | 5.709541 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022140 | RBH | 2.599961 | 20.358068 | 11.222113 |
