Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0021420 | OGI:04081600 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28705409-28706366 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatgataaacttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctaactccttccttggatgtctgagccatatggttttcattacatttacatttgctattGggtcttgccattagtattcttggttatgattagggttaagttctgtctcctgtagcaatgataattgtactgtcatccaagtatccatgtgtgtggttatgttttagttttctgttcatgtgtgtcatgttttagtttgctttgctgacgggcaaatgatgatgaaatcaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctagatccttccttggatgtctgatgcctgttgcctagtaaacttcacgtgattgatgttcaagcagtttcatgtttcatatttaattgttacatcttagtagagtgcttgttatgcctgcccagtgatgatgaaaacaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgcctcgccaggcttgagagcttatgctgttaaatccttccttggatgtctgagggcccgccttgtattctgtttacaaaacttaattacatcatctccagtgtgcaattctttttgtttgctcatgttctcatttcaagatgcagcttctatcaacaggtttgcgaaagttctgcctggctgatcagactagctgaggacatgcttattcacaggttcgcagcatctacacactgtttacattttggcagtgatctaaacatcggcgatcatcacagtaagcgtgcaaccatttcatcaacacaacactgtttacatctgatacttagactgagaccactgtcctcaagctacctatgctgctccaataccagaaaacagtaa
More
|
||||||||||
| CDS seq | atgatgataaacttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctaactccttccttggattttgctttgctgacgggcaaatgatgatgaaatcaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctagatccttccttggatgtctgatgcctgttgcctattgccgcctaagagctttcgcctcgccaggcttgagagcttatgctgttaaatccttccttggatgtctgagggcccgccttgtttgcgaaagttctgcctggctgatcagactagctgaggacatgcttattcacaggttcgcagcatctacacactgtttacattttggcagtgatctaaacatcggcgatcatcacagtaagcgtgcaaccatttcatcaacacaacactgtttacatctgatacttagactgagaccactgtcctcaagctacctatgctgctccaataccagaaaacagtaa
More
|
||||||||||
| Protein seq | MMINLRLVSHNIRSCRLRAFALPGLRANAANSFLGFCFADGQMMMKSRLVSHNIRSCRLRAFALPGLRANAARSFLGCLMPVAYCRLRAFASPGLRAYAVKSFLGCLRARLVCESSAWLIRLAEDMLIHRFAASTHCLHFGSDLNIGDHHSKRATISSTQHCLHLILRLRPLSSSYLCCSNTRKQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0021420 | OsLima_04g0021420.01 | Chr04 | 28705409 | 28706366 | + | NAM | ||
| CDS seq | atgatgataaacttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctaactccttccttggattttgctttgctgacgggcaaatgatgatgaaatcaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccttgccgggcttgagagctaatgctgctagatccttccttggatgtctgatgcctgttgcctattgccgcctaagagctttcgcctcgccaggcttgagagcttatgctgttaaatccttccttggatgtctgagggcccgccttgtttgcgaaagttctgcctggctgatcagactagctgaggacatgcttattcacaggttcgcagcatctacacactgtttacattttggcagtgatctaaacatcggcgatcatcacagtaagcgtgcaaccatttcatcaacacaacactgtttacatctgatacttagactgagaccactgtcctcaagctacctatgctgctccaataccagaaaacagtaa
More
|
|||||||
| Protein seq | MMINLRLVSHNIRSCRLRAFALPGLRANAANSFLGFCFADGQMMMKSRLVSHNIRSCRLRAFALPGLRANAARSFLGCLMPVAYCRLRAFASPGLRAYAVKSFLGCLRARLVCESSAWLIRLAEDMLIHRFAASTHCLHFGSDLNIGDHHSKRATISSTQHCLHLILRLRPLSSSYLCCSNTRKQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.288280 | 0.577194 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0651500 | SBH | 13.148543 | 23.028706 | 76.706291 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0651500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021720 | RBH | 2.355205 | 17.652897 | 9.810489 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022460 | RBH | 0.278571 | 6.340698 | 4.988273 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022190 | RBH | 4.476872 | 10.102554 | 6.297814 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021930 | RBH | 0.239135 | 0.530554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022120 | RBH | 4.955461 | 29.962605 | 17.116770 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0429400 | SBH | 7.2187795 | 111.50201 | 10.4441025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020940 | RBH | 0.874043 | 1.479354 | 1.680672 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027050 | RBH | 0.083065 | 0.340473 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021260 | RBH | 0.432653 | 27.032450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021350 | RBH | 0.000000 | 14.994267 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021760 | RBH | 0.556798 | 2.147101 | 1.444389 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021940 | RBH | 0.0 | 11.759405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021200 | RBH | 0.739315 | 10.061651 | 3.148721 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021120 | RBH | 3.048811 | 22.001333 | 41.257481 |
