Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0651500 | OGI:02074230 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:26262647-26265666 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCCCACCCCCACTCCGCCGCCGCTCACAACCACGTGCGCACAGAAAACACATCGCGTTTTTTCTTTCTCCCATCTACCGATCCCTAATTCCCCATTCCTCTCTTTTCTCTGAATAGAAGTCCGATTGGTGAGGCGAGGCGACGCCAGGGAGCCAGCGAGGCAGCGACGTGCCTCCAGGCCGCGCGCCGCCGTCGCCGCCTCGAAGCTCCCTGCGCCGCCGTCGTAGGTTAGTAGCGTGCCGCTGCCGCTGCCGTGTGTGTGGAGCCGCCGTCGCATGTGATGTGTACTCTGTTGAACTCCAAAACATGTGAGCTTGTTATGTACTGCATGTGATGTGCTGCTATGATGCTATGCATGCACCGATGTACTGCTTAAGTTTATGTGATGAACTTGTTAAGTTTAATGTTTGTTGGAGTAAGTTTACTATGTTTTCTTCTTCCTGTAATCCTGTTGTTGCTTGCTTGCTGTTTTTCTGTTTCTTTCGGGTGCTGAGACCCGGCGGGTGCCCCGTACCCGCTGCGGGGACGGGGACGGGGGAAATCTACCCCCTGTGCGGGGATGGGGAAGGGGAACGTTCTGTTTTTTATGCTGTGGGGATGGGTACGGGGTGCACAAACCCGACGGGGGCAGCCCCGTTGCCATCCCTAATCTCCCTCCAGTCCCTCCCTACCACAGCCACAGCCAGATCCGCTTATTCTTGCGCACTTTTTTCTGCATCCTGCGATTTATTTTGTTTCGTTTTGATCTTTTTTTTCACGGTTGTTTTGTTGTTTTATTATGCAAGCGATGCGATGGCAGTGACGACCTGGTAATATTCAAGCTCAACAGACCAAATCACAGGTCTTTCTCTCTGGATCTACTCCTCAGGGATTGATTTGTATGCCGATTTTTCCGCTGAACCGAGCCATCTGATTTTGCTCTTTTTTCTTATCTGGTTTAATTGTTTTTCTGTTAAAAATTGCTATCTTTCTCGATTCCTTATTGGTTTATATTCGTGTTCTTTGCACTGGAGGAGTCTATTGCGATGAGGATATTAAGCTCCCTCTTCTGAAGGCATTGAGGACACTCGCTGGCAGAATCGAACCAATTAACAAAGCCACCACTGAGTAACTTGAAATCCTCCTTCAATTTGTTCTGCTATGTTTTTTCTGTTGTTTTTCTTAGATCTGTTTGGATTGTGAGGAGGTAATTGATGCATAATCCAACACTTGATCAGAGGACGGCTTCTGTCGTCCATGTGACGTTACACATCTTTGCATCTGAATCCAATCACAGAACAGATCTTATCGTTTATGGTTTTATGTGGATTTTTTACAGTATCAGAGGATGAAACCTTATAACAATCTTAGGACACCTTCTGACACAGTGCTATAACACTGTGAATGAGAAGGCTTTTCTTTCTGATGATGCTTTAAAGATCATTTTTATATTCTTTTCTTTAAATCTTGCGTGTTCTATAATTTTTTCTCCTTCCTATATCTACGATTTTAAGCCTATGATGATTAGCATATTGTTGGAATTACCGTCAGATTATCAAATGACGACATTTGTCTGGCATCCTGAGGCTTTATAATCCAGTAATATTGTAGTGTATAAAGATCTAGATTTTGTTCATGTATTATGAGTTGCAATCTAGTCCCAGTGAGGATTCTATGACCATAGGAAGTGCCGTATGACACTTTAAACAGCAGCTGCTTTTCTCATTTGCAAGTGTCCATCCTTCGACCATAACCTTTGTGGTTTGGTCTGGGATGGAGTACCCATTTGCAATTGGTTAATTCAGCTGTGTGTGTGATTTTAAACGGGTCTCTTGAGGGATTATGCGAAGCTGTCTCATAATAATATAGAATTTGTATCTGTTATTTTGTGATAGTTTGGGCCTGATGCCACGTCACCTGTAGCTACGGCTTTGACCGGTGATGCTTTGATTAGGCCAAAACAGAGTTGGTTTCCTACGTTTCACATGTTGATAGGAACCTGGGACTGCATCTCCATCGGTCTACAGAGCCCGTATCTGTCATTACATTTGATTTATTTGAATTAACAACCTTTTTTGTTTTGCTTTTATTTTTTTGGTCCCTTGATTATATGGCAATGATGATAAATTTAAGGCTTGTTTCTCATAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCCTGCCAGGCTTGAGAGCTAATGCTGTTAATTCCTTCCTTGGATGTCTGAGCCATTTTCTTCATGCAAGTTTATTTGTTGTTCTTCTGTAAATTGGTGATCTGCATGGCAAATGATGCTAAAAGCAAGGCTTGTTTCTCATAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCTTGCCAGGTTTGAGAGCTAATGCTGCTAATTCCTTCCTTGGATGTCTGATGCAATGCAACACCAACTGTATTCTCTTTAAATTATTGTTTTGCCACTTCTATAATTAATGTTTACTGAATGTAAGTGAGCTGTTGATGGACGCCTAATGATGCTAAAATTTCTCATAGCATCTGCAGTTACTGCCTAATAGCTTTCGCCCTGCCAGGCTTGAGAGCTAGTGCTGTTAAATCCTTCGTTGAATGCATACCCAAGCTCACTATTTTGATCAACCTGTGTTTTTAATAAATATAAATTCTAAAAGTTCGATGAAATGTTGATTTCATGTGAAACTTGTCTGTTCGAGTTGTGAATTCAGCTATTGAGACAGTGAAAAGAGCAGTTATTCCACAAGATCCAGCTATTGAGACAGTGAAAAGAGCAGTTATTCCACAAGATCAGAACTAGACAAGAACACTTCCAACCTGTAAAATCTTATTTTGTACTATTGGCTGTAATGACAATATGCGGACTATGAGATGTATTTGTAGTATGCAATATCCGTTGTGATTTTTGCATAACAAGCAGCTGATTATATTTTATTATTCATCTTGCATTGTCATACTGTGAGGGTCTGTAGTATTTTGTCTTTATTTAACAGTCTGTTCCTCTACTATGTTTCTATTATGTTTATGCATGGAGATTTAGTGTG
More
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| CDS seq | TCTGCATGGCAAATGATGCTAAAAGCAAGGCTTGTTTCTCATAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCTTGCCAGGTTTGAGAGCTAATGCTGCTAATTCCTTCCTTGGATGTCTGATGCAATGCAACACCAACTGTATTCTCTTTAAATTATTGTTTTGCCACTTCTATAATTAA |
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| Protein seq | SAWQMMLKARLVSHNIRSCRLRAFALPGLRANAANSFLGCLMQCNTNCILFKLLFCHFYN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0651500 | Os02t0651500-01 | Chr02 | 26262647 | 26265666 | + | irgsp1_rep | ||
| CDS seq | TCTGCATGGCAAATGATGCTAAAAGCAAGGCTTGTTTCTCATAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCTTGCCAGGTTTGAGAGCTAATGCTGCTAATTCCTTCCTTGGATGTCTGATGCAATGCAACACCAACTGTATTCTCTTTAAATTATTGTTTTGCCACTTCTATAATTAA |
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| Protein seq | SAWQMMLKARLVSHNIRSCRLRAFALPGLRANAANSFLGCLMQCNTNCILFKLLFCHFYN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0651500 | Os02t0651500-03 | Chr02 | 26262741 | 26263048 | + | irgsp1_rep | ||
| CDS seq | - |
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| Protein seq | - |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0651500 | Os02t0651500-04 | Chr02 | 26263454 | 26264869 | + | irgsp1_rep | ||
| CDS seq | ATGGCAATGATGATAAATTTAAGGCTTGTTTCTCATAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCCTGCCAGGCTTGAGAGCTAATGCTGTTAATTCCTTCCTTGGATGTCTGAGCCATTTTCTTCATGC |
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| Protein seq | MAMMINLRLVSHNIRSCRLRAFALPGLRANAVNSFLGCLSHFLH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0651500 | Os02t0651500-05 | Chr02 | 26265270 | 26265575 | + | irgsp1_rep | ||
| CDS seq | - |
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| Protein seq | - |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0651500 | RBH | 13.148543 | 23.028706 | 76.706291 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027240 | RBH | 2.332048 | 29.433634 | 14.175819 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027350 | RBH | 0.230845 | 8.107316 | 11.021783 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027180 | RBH | 1.520969 | 0.000000 | 12.398870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026790 | RBH | 0.202372 | 0.710034 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026900 | RBH | 78.803055 | 192.643906 | 76.565201 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026710 | RBH | 4.360421 | 12.106572 | 12.324232 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027050 | RBH | 0.083065 | 0.340473 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026730 | RBH | 0.639942 | 14.584592 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027090 | RBH | 10.553230 | 33.637100 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026910 | RBH | 13.040875 | 10.031034 | 16.600845 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026620 | RBH | 0.294680 | 7.257105 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027220 | RBH | 1.461497 | 11.553683 | 7.807193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026950 | RBH | 3.549076 | 0.000000 | 25.093903 |
