Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLiXu_02g0026910 | OGI:02074230 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:27932521-27934273 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | gatattaagctccctcttctgaaggcattgaggacactcgctggcagaatcgaaccaattaacaaagccaccactgagtaacttgaaatcctccttcaatttgttctgctatgttttttctgttgtttttcttagatctgtttggattgtgaggaggtaattgatgcataatccaacacttgatcagaggacggcttctgtcgtccatgtgacgttacacatctttgcatctgaatccaatcacagaacagatcttatcgtttatggttttatgtggattttttacagtatcagaggatgaaaccttataacaatcttaggacaccttctgacacagtgctataacactgtgaatgagaaggcttttctttctgatgatgctttaaagatcatttttatattcttttctttaaatcttgcgtgttctataattttttctccttcctatatctacgattttaagcctatgatgattagcatattgttggaattaccgtcagattatcaaatgacgacatttgtctggcatcctgaggctttataatccagtaatattgtagtgtataaagatctagattttgttcatgtattatgagttgcaatctagtcccagtgaggattctatgaccataggaagtgccgtatgacactttaaacagcagctgcttttctcatttgcaagtgtccatccttcgaccataacttttgtggtttggtctgggatggagtacccatttgcaattggttaattcagctgtgtgtgtgattttaaacgggtctcttgagggattatgcgaagctgtctcataataatatagaatttgtatctgttattttgtgatagtttgggcctgatgccacgtcacctgtagctacggctttgaccggtgatgctttgattaggccaaaacagagttggtttcctacgtttcacatgttgataggaacctgggactgcatctccatcggtctacagagcccgtttctgtcattacatttgatttatttgaattaacaaccttttttgttttgcttttatttttttggtcccttgattatatggcaatgatgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctgtaaattggtgatctgcatggcaaatgatgctaaaagcaaggcttgtttctcacaacattcgcagttgccgcctaagagctttcgccttgccaggtttgagagctaatgctgctaattccttccttggatgtctgatgcaatgcaacaccaactgtattctctttaaattattgttttgccacttctataattaatgtttactgaatgtaagtgagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaataaatataaattctaaaagttagatgaaatgttgatttcatgtgaaacttgtctgttcgagttgtgaattcagctattgagacagtgaaaagagcagttattccacaagatccagctattgagacagtgaaaagagcagttattccacaagatcagaactag
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CDS seq | atgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctttgccgcctaagagctttcgccttgccagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaa |
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Protein seq | MINLRLVSHNIRSCRLRAFALPGLRANAVNSFLGCLSHFLHASLFVVLLCRLRAFALPAVDGRLMMLKSRLVSHSICSCCLIAFALPGLRASAVKSFVECILLTILINLCF |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLiXu_02g0026910 | OsLiXu_02g0026910.02 | Chr02 | 27933589 | 27934111 | + | NAM | ||
CDS seq | atgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctttgccgcctaagagctttcgccttgccagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaa
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Protein seq | MINLRLVSHNIRSCRLRAFALPGLRANAVNSFLGCLSHFLHASLFVVLLCRLRAFALPAVDGRLMMLKSRLVSHSICSCCLIAFALPGLRASAVKSFVECILLTILINLCF |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLiXu_02g0026910 | OsLiXu_02g0026910.01 | Chr02 | 27932521 | 27934273 | + | NAM | ||
CDS seq | atgcaagtttatttgttgttcttctgtaaattggtgatctgcatggcaaatgatgctaaaagcaaggcttgtttctcacaacattcgcagttgccgcctaagagctttcgccttgccagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtctattgagacagtgaaaagagcagttattccacaagatccagctattgagacagtgaaaagagcagttattccacaagatcagaactag
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Protein seq | MQVYLLFFCKLVICMANDAKSKACFSQHSQLPPKSFRLASCCLIAFALPGLRASAVKSFVECILLTILINLSIETVKRAVIPQDPAIETVKRAVIPQDQN |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
A3 | Chr02 | 27933828 | 27934009 | + | OsLiXu_02g0026910.02 | OsLiXu_02g0026910.02,OsLiXu_02g0026910.01 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 13.040875 | 10.031034 | 16.600845 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0651500 | RBH | 13.148543 | 23.028706 | 76.706291 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0651500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027240 | RBH | 2.332048 | 29.433634 | 14.175819 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027350 | RBH | 0.230845 | 8.107316 | 11.021783 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027180 | RBH | 1.520969 | 0.000000 | 12.398870 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026790 | RBH | 0.202372 | 0.710034 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026900 | RBH | 78.803055 | 192.643906 | 76.565201 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026710 | RBH | 4.360421 | 12.106572 | 12.324232 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027050 | RBH | 0.083065 | 0.340473 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021260 | SBH | 0.432653 | 27.032450 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027090 | RBH | 10.553230 | 33.637100 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021760 | RBH | 0.556798 | 2.147101 | 1.444389 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026620 | RBH | 0.294680 | 7.257105 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027220 | RBH | 1.461497 | 11.553683 | 7.807193 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026950 | RBH | 3.549076 | 0.000000 | 25.093903 |