Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_02g0026910 OGI:02074230 | 14/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr02:27932521-27934273
Gene Symbol -
DNA seq

gatattaagctccctcttctgaaggcattgaggacactcgctggcagaatcgaaccaattaacaaagccaccactgagtaacttgaaatcctccttcaatttgttctgctatgttttttctgttgtttttcttagatctgtttggattgtgaggaggtaattgatgcataatccaacacttgatcagaggacggcttctgtcgtccatgtgacgttacacatctttgcatctgaatccaatcacagaacagatcttatcgtttatggttttatgtggattttttacagtatcagaggatgaaaccttataacaatcttaggacaccttctgacacagtgctataacactgtgaatgagaaggcttttctttctgatgatgctttaaagatcatttttatattcttttctttaaatcttgcgtgttctataattttttctccttcctatatctacgattttaagcctatgatgattagcatattgttggaattaccgtcagattatcaaatgacgacatttgtctggcatcctgaggctttataatccagtaatattgtagtgtataaagatctagattttgttcatgtattatgagttgcaatctagtcccagtgaggattctatgaccataggaagtgccgtatgacactttaaacagcagctgcttttctcatttgcaagtgtccatccttcgaccataacttttgtggtttggtctgggatggagtacccatttgcaattggttaattcagctgtgtgtgtgattttaaacgggtctcttgagggattatgcgaagctgtctcataataatatagaatttgtatctgttattttgtgatagtttgggcctgatgccacgtcacctgtagctacggctttgaccggtgatgctttgattaggccaaaacagagttggtttcctacgtttcacatgttgataggaacctgggactgcatctccatcggtctacagagcccgtttctgtcattacatttgatttatttgaattaacaaccttttttgttttgcttttatttttttggtcccttgattatatggcaatgatgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctgtaaattggtgatctgcatggcaaatgatgctaaaagcaaggcttgtttctcacaacattcgcagttgccgcctaagagctttcgccttgccaggtttgagagctaatgctgctaattccttccttggatgtctgatgcaatgcaacaccaactgtattctctttaaattattgttttgccacttctataattaatgtttactgaatgtaagtgagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaataaatataaattctaaaagttagatgaaatgttgatttcatgtgaaacttgtctgttcgagttgtgaattcagctattgagacagtgaaaagagcagttattccacaagatccagctattgagacagtgaaaagagcagttattccacaagatcagaactag

More
CDS seq

atgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctttgccgcctaagagctttcgccttgccagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaa

Protein seq

MINLRLVSHNIRSCRLRAFALPGLRANAVNSFLGCLSHFLHASLFVVLLCRLRAFALPAVDGRLMMLKSRLVSHSICSCCLIAFALPGLRASAVKSFVECILLTILINLCF

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_02g0026910 OsLiXu_02g0026910.02 Chr02 27933589 27934111 + NAM
CDS seq

atgataaatttaaggcttgtttctcataacattcgcagttgccgcctaagagctttcgccctgccaggcttgagagctaatgctgttaattccttccttggatgtctgagccattttcttcatgcaagtttatttgttgttcttctttgccgcctaagagctttcgccttgccagctgttgatggacgcctaatgatgctaaaatcaaggcttgtttctcatagtatttgcagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtgtttttaa

More
Protein seq

MINLRLVSHNIRSCRLRAFALPGLRANAVNSFLGCLSHFLHASLFVVLLCRLRAFALPAVDGRLMMLKSRLVSHSICSCCLIAFALPGLRASAVKSFVECILLTILINLCF

Gene Transcript Chromosome Start End Strand Source
OsLiXu_02g0026910 OsLiXu_02g0026910.01 Chr02 27932521 27934273 + NAM
CDS seq

atgcaagtttatttgttgttcttctgtaaattggtgatctgcatggcaaatgatgctaaaagcaaggcttgtttctcacaacattcgcagttgccgcctaagagctttcgccttgccagttgctgcctaatagctttcgctctgccaggcttgagagctagtgctgttaaatccttcgttgaatgcatactgctcactattttgatcaacctgtctattgagacagtgaaaagagcagttattccacaagatccagctattgagacagtgaaaagagcagttattccacaagatcagaactag

More
Protein seq

MQVYLLFFCKLVICMANDAKSKACFSQHSQLPPKSFRLASCCLIAFALPGLRASAVKSFVECILLTILINLSIETVKRAVIPQDPAIETVKRAVIPQDQN

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr02 27933828 27934009 + OsLiXu_02g0026910.02 OsLiXu_02g0026910.02,OsLiXu_02g0026910.01 All

Expression

Leaf Root Panicle
FPKM 13.040875 10.031034 16.600845

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0651500 RBH 13.148543 23.028706 76.706291
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os02g0651500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0027240 RBH 2.332048 29.433634 14.175819
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0027350 RBH 0.230845 8.107316 11.021783
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0027180 RBH 1.520969 0.000000 12.398870
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0026790 RBH 0.202372 0.710034 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0026900 RBH 78.803055 192.643906 76.565201
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0026710 RBH 4.360421 12.106572 12.324232
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0027050 RBH 0.083065 0.340473 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0021260 SBH 0.432653 27.032450 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0027090 RBH 10.553230 33.637100 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0021760 RBH 0.556798 2.147101 1.444389
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0026620 RBH 0.294680 7.257105 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G027220 RBH 1.461497 11.553683 7.807193
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0026950 RBH 3.549076 0.000000 25.093903
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.