Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0021250 | OGI:04081170 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28524472-28526215 | ||||||||
| Gene Symbol | RLCK154, OsRLCK154, STRK1, OsSTRK1 | ||||||||||
| DNA seq | aaccaaaatgaaaccaaattgcttgtccaccaccaaccatctaaagtactactacctaatacacgcgatctacaaggaaagaatttaattactgaactactaatatacgttcactggtgctacaagatgccatgacatcacaaaattttctatctgatccaaaggcttaaactaatctaccttctcaaactacacagtacacacattcttctcctacctaccctaaaatactggtactattcacagtctacacccagaaaagttaaaacatcatcttgcggtccaatctcgatccaacggccgaagccaacgcggaggtcttctcctggagcgcgcgcaccacgtcggccatggacggcctcagcccggggctgtcgccgatgcactgcatggcgagctccgccatgacagccgcctctgcgccgtcgtgctcgcctccgagcctccggtcgacaacgtcggccaccttcccttcgctgagcatgggacctacggcggcagtgagacgccgcccggtgtcgcggcagacggcctccttccccgtcacgagctcgagcagcagcaccccgaagctgtacacgtcgctcttcttcgtggccacgccggagcggatgaggtgtgggtctacgtatcccggggagcccatgacggcgcgcgccgacggcctgcaccccaccgtggccgagaagccgacgtgggcgaagccgaagtcgcagagcttggcgttcatgttggcgtcgaggaggacgttggacgccttgatgtccccgtggatgaccgccGggtggcggctctcgtggagatactccagcgccatggccacctggaacgcaatcgccacgcgccgcgcccagggcagcaccgacgccacgccgcccgcgacctcgctgcagtggagccgttcgtggaggtcaccattcggcgcgtactcgaacaccagcacaccttcatctgtgagaagatcgagacgcaagaacgttagcacacttgatacgggcagtagtttaattcagcagcgagctttgcaaaatctggtgttgatgcgcgatgataattacctcgttcgtcgcagtagccgagcaggcggacgatgtgcgggtggcggagggagaggagcacctcgagctcctggcggaaggcgcggtgcaggcgctcgctgctgcagtggaccttgacggcgccgaggcgggaggacgagagcgacgcgaggtacaccgtgctgaacccgccgtgcccgatcacccgggacgagaacccccccgtgacggactccacgtccgcccacgcgagctgcctcgccgacgcggcggcgacgttcttgcagctcccttcctcctccacgccggccggatcggccgccacccgcgagctcattgcacctgcctccccgcgcttcctgacgtcgccgccatcgcaccggcgcacgcaggcgaagagaccacatccggtgaacattgtgctagcgcgcgcccgccccgaagtgagagatccacgagctctggagggcgacgaaacgggagagaatcgaagggtacaagtgaggcgaggcgaggcgaggagtgtgagtggagggagaataagttctccctcgttgatctgtgtagctttcagctttgttgctgttagttgtagctacgttcttggctttgccttactggataagaaggggacaggttgtgcagaggatccagatcaaagaattgctagtggctggcttccctggctcttgtgttgctaacttgct
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| CDS seq | atgttcaccggatgtggtctcttcgcctgcgtgcgccggtgcgatggcggcgacgtcaggaagcgcggggaggcaggtgcaatgagctcgcgggtggcggccgatccggccggcgtggaggaggaagggagctgcaagaacgtcgccgccgcgtcggcgaggcagctcgcgtgggcggacgtggagtccgtcacgggggggttctcgtcccgggtgatcgggcacggcgggttcagcacggtgtacctcgcgtcgctctcgtcctcccgcctcggcgccgtcaaggtccactgcagcagcgagcgcctgcaccgcgccttccgccaggagctcgaggtgctcctctccctccgccacccgcacatcgtccgcctgctcggctactgcgacgaacgagatgaaggtgtgctggtgttcgagtacgcgccgaatggtgacctccacgaacggctccactgcagcgaggtcgcgggcggcgtggcgtcggtgctgccctgggcgcggcgcgtggcgattgcgttccaggtggccatggcgctggagtatctccacgagagccgccaccCggcggtcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaacatgaacgccaagctctgcgacttcggcttcgcccacgtcggcttctcggccacggtggggtgcaggccgtcggcgcgcgccgtcatgggctccccgggatacgtagacccacacctcatccgctccggcgtggccacgaagaagagcgacgtgtacagcttcggggtgctgctgctcgagctcgtgacggggaaggaggccgtctgccgcgacaccgggcggcgtctcactgccgccgtaggtcccatgctcagcgaagggaaggtggccgacgttgtcgaccggaggctcggaggcgagcacgacggcgcagaggcggctgtcatggcggagctcgccatgcagtgcatcggcgacagccccgggctgaggccgtccatggccgacgtggtgcgcgcgctccaggagaagacctccgcgttggcttcggccgttggatcgagattggaccgcaagatgatgttttaa
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| Protein seq | MFTGCGLFACVRRCDGGDVRKRGEAGAMSSRVAADPAGVEEEGSCKNVAAASARQLAWADVESVTGGFSSRVIGHGGFSTVYLASLSSSRLGAVKVHCSSERLHRAFRQELEVLLSLRHPHIVRLLGYCDERDEGVLVFEYAPNGDLHERLHCSEVAGGVASVLPWARRVAIAFQVAMALEYLHESRHPAVIHGDIKASNVLLDANMNAKLCDFGFAHVGFSATVGCRPSARAVMGSPGYVDPHLIRSGVATKKSDVYSFGVLLLELVTGKEAVCRDTGRRLTAAVGPMLSEGKVADVVDRRLGGEHDGAEAAVMAELAMQCIGDSPGLRPSMADVVRALQEKTSALASAVGSRLDRKMMF |
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| Function | Salt tolerance receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q7XR88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0021250 | OsLima_04g0021250.01 | Chr04 | 28524472 | 28526215 | - | NAM | ||
| CDS seq | atgttcaccggatgtggtctcttcgcctgcgtgcgccggtgcgatggcggcgacgtcaggaagcgcggggaggcaggtgcaatgagctcgcgggtggcggccgatccggccggcgtggaggaggaagggagctgcaagaacgtcgccgccgcgtcggcgaggcagctcgcgtgggcggacgtggagtccgtcacgggggggttctcgtcccgggtgatcgggcacggcgggttcagcacggtgtacctcgcgtcgctctcgtcctcccgcctcggcgccgtcaaggtccactgcagcagcgagcgcctgcaccgcgccttccgccaggagctcgaggtgctcctctccctccgccacccgcacatcgtccgcctgctcggctactgcgacgaacgagatgaaggtgtgctggtgttcgagtacgcgccgaatggtgacctccacgaacggctccactgcagcgaggtcgcgggcggcgtggcgtcggtgctgccctgggcgcggcgcgtggcgattgcgttccaggtggccatggcgctggagtatctccacgagagccgccaccCggcggtcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaacatgaacgccaagctctgcgacttcggcttcgcccacgtcggcttctcggccacggtggggtgcaggccgtcggcgcgcgccgtcatgggctccccgggatacgtagacccacacctcatccgctccggcgtggccacgaagaagagcgacgtgtacagcttcggggtgctgctgctcgagctcgtgacggggaaggaggccgtctgccgcgacaccgggcggcgtctcactgccgccgtaggtcccatgctcagcgaagggaaggtggccgacgttgtcgaccggaggctcggaggcgagcacgacggcgcagaggcggctgtcatggcggagctcgccatgcagtgcatcggcgacagccccgggctgaggccgtccatggccgacgtggtgcgcgcgctccaggagaagacctccgcgttggcttcggccgttggatcgagattggaccgcaagatgatgttttaa
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| Protein seq | MFTGCGLFACVRRCDGGDVRKRGEAGAMSSRVAADPAGVEEEGSCKNVAAASARQLAWADVESVTGGFSSRVIGHGGFSTVYLASLSSSRLGAVKVHCSSERLHRAFRQELEVLLSLRHPHIVRLLGYCDERDEGVLVFEYAPNGDLHERLHCSEVAGGVASVLPWARRVAIAFQVAMALEYLHESRHPAVIHGDIKASNVLLDANMNAKLCDFGFAHVGFSATVGCRPSARAVMGSPGYVDPHLIRSGVATKKSDVYSFGVLLLELVTGKEAVCRDTGRRLTAAVGPMLSEGKVADVVDRRLGGEHDGAEAAVMAELAMQCIGDSPGLRPSMADVVRALQEKTSALASAVGSRLDRKMMF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.222434 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0540900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0540900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021540 | RBH | 0.0 | 1.603016 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022290 | RBH | 0.0 | 0.000000 | 0.194894 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022010 | RBH | 0.0 | 0.0 | 1.617831 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021760 | RBH | 0.0 | 0.036033 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021950 | RBH | 0.0 | 0.0 | 1.720013 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0426900 | RBH | 1.8671155 | 18.0018835 | 2.9250805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020760 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0427000 | RBH | 2.261734 | 2.1952205 | 1.781106 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026880 | RBH | 0.0 | 0.171401 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021090 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021580 | RBH | 0.0 | 0.0 | 0.577487 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021770 | RBH | 0.000000 | 0.838663 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021030 | RBH | 0.0 | 0.521408 | 0.864186 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020940 | RBH | 0.0 | 0.0 | 0.479484 |
