Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0026880 | OGI:02073810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:27926946-27928441 | ||||||||
| Gene Symbol | RLCK79, OsRLCK79 | ||||||||||
| DNA seq | tactcacaagatcacatgtttagattaggtaaatcatgtatatcttttcaacaacatgtacaagatcccttgttaatgggccactacatgcctacaataaccgcatccatgcatgacatcacaaaatttttctacttgatcccaaagtttcaactaatccactgatgatgatgagataaggtaaaaaaaatgaacttttggagcctccataacatgctatttacagcctttcgacgtgtaactcatgaaaccatcttatcgcttggtttggatccgacggctgagatcaacgccgtcgtcttctcctgcagctcgcgcaccacctccgccatggacgggcggagcccggtgccgtcgctgacgcaccgcagcgccagcgccgccacggtggcggcctcctcgacgtcgtagtcacctcccaacctccggtccaccacgtcggccagcttgccctcgccgatcgagggccccacggcggcggtgagccggtgccccgtctgggcgcagatggcctcccgcccggtgacgagctcgagcagcagcacgccgaagctgtacacgtcgctcttcttggtggccacgccggagcggaggaagtgcgggtccgcgtatcccggggagcccatgacggggcggccccacgccctggtggcgccggacggcgggcggaccgcggccgagaacccgacgtgcgcgaagccgaagtcgcagagcttggcgtcgtggttggcgtcgagcagcacgttcgaggacttgatgtcgccgtggatgacggcggggtcccggctctcgtggaggtactccagcgccatcgccacctggaacgcgacggccatgcgccgcgcccacggcagcaccgtccggctcttcccgccgctccggtggtggagcctctcgtggaggtcgccgttcggtgcgtactcgaacaccaatacaccctcatctgcacacagaaacaagttcatgtcagccgccgccgcattaactcaaaacgagttggagatttcgtagatagagttcgtcgatgaggtgacgagtgatttcgtgtttacctcgttcgtcgcagtagccgaggaggcggacgacgtgggggtggcggagggagaggagcacgtcgcgctcctggcagaaggcgcggtggaggcgctcgctgctgcgctgcaccttgacggcgccgaggcgggaggaggtcagcgacgcgaggtacacggtgctgaacccgccctgcccgatcacccgggacgagaatccgcccgtgaccgactcgatctccgcccacccgaaccgcctcgccaccaccccgccgcccttctccaccaccgaccccgcgccgccgccgccgcagcccggctcgtccgacacgcgtgcatcgctctccatctcgccgcctcccacgcagcagcagcgggcaaacgccaagaggccgcacccgtccaacatcttgccgcgcgcgctcgcgcacacgcacacacacgatgtcacgagtacacgccctc
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| CDS seq | atgttggacgggtgcggcctcttggcgtttgcccgctgctgctgcgtgggaggcggcgagatggagagcgatgcacgcgtgtcggacgagccgggctgcggcggcggcggcgcggggtcggtggtggagaagggcggcggggtggtggcgaggcggttcgggtgggcggagatcgagtcggtcacgggcggattctcgtcccgggtgatcgggcagggcgggttcagcaccgtgtacctcgcgtcgctgacctcctcccgcctcggcgccgtcaaggtgcagcgcagcagcgagcgcctccaccgcgccttctgccaggagcgcgacgtgctcctctccctccgccacccccacgtcgtccgcctcctcggctactgcgacgaacgagatgagggtgtattggtgttcgagtacgcaccgaacggcgacctccacgagaggctccaccaccggagcggcgggaagagccggacggtgctgccgtgggcgcggcgcatggccgtcgcgttccaggtggcgatggcgctggagtacctccacgagagccgggaccccgccgtcatccacggcgacatcaagtcctcgaacgtgctgctcgacgccaaccacgacgccaagctctgcgacttcggcttcgcgcacgtcgggttctcggccgcggtccgcccgccgtccggcgccaccagggcgtggggccgccccgtcatgggctccccgggatacgcggacccgcacttcctccgctccggcgtggccaccaagaagagcgacgtgtacagcttcggcgtgctgctgctcgagctcgtcaccgggcgggaggccatctgcgcccagacggggcaccggctcaccgccgccgtggggccctcgatcggcgagggcaagctggccgacgtggtggaccggaggttgggaggtgactacgacgtcgaggaggccgccaccgtggcggcgctggcgctgcggtgcgtcagcgacggcaccgggctccgcccgtccatggcggaggtggtgcgcgagctgcaggagaagacgacggcgttgatctcagccgtcggatccaaaccaagcgataagatggtttcatga
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| Protein seq | MLDGCGLLAFARCCCVGGGEMESDARVSDEPGCGGGGAGSVVEKGGGVVARRFGWAEIESVTGGFSSRVIGQGGFSTVYLASLTSSRLGAVKVQRSSERLHRAFCQERDVLLSLRHPHVVRLLGYCDERDEGVLVFEYAPNGDLHERLHHRSGGKSRTVLPWARRMAVAFQVAMALEYLHESRDPAVIHGDIKSSNVLLDANHDAKLCDFGFAHVGFSAAVRPPSGATRAWGRPVMGSPGYADPHFLRSGVATKKSDVYSFGVLLLELVTGREAICAQTGHRLTAAVGPSIGEGKLADVVDRRLGGDYDVEEAATVAALALRCVSDGTGLRPSMAEVVRELQEKTTALISAVGSKPSDKMVS |
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| Function | Salt tolerance receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q7XR88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0026880 | OsLima_02g0026880.01 | Chr02 | 27926946 | 27928441 | - | NAM | ||
| CDS seq | atgttggacgggtgcggcctcttggcgtttgcccgctgctgctgcgtgggaggcggcgagatggagagcgatgcacgcgtgtcggacgagccgggctgcggcggcggcggcgcggggtcggtggtggagaagggcggcggggtggtggcgaggcggttcgggtgggcggagatcgagtcggtcacgggcggattctcgtcccgggtgatcgggcagggcgggttcagcaccgtgtacctcgcgtcgctgacctcctcccgcctcggcgccgtcaaggtgcagcgcagcagcgagcgcctccaccgcgccttctgccaggagcgcgacgtgctcctctccctccgccacccccacgtcgtccgcctcctcggctactgcgacgaacgagatgagggtgtattggtgttcgagtacgcaccgaacggcgacctccacgagaggctccaccaccggagcggcgggaagagccggacggtgctgccgtgggcgcggcgcatggccgtcgcgttccaggtggcgatggcgctggagtacctccacgagagccgggaccccgccgtcatccacggcgacatcaagtcctcgaacgtgctgctcgacgccaaccacgacgccaagctctgcgacttcggcttcgcgcacgtcgggttctcggccgcggtccgcccgccgtccggcgccaccagggcgtggggccgccccgtcatgggctccccgggatacgcggacccgcacttcctccgctccggcgtggccaccaagaagagcgacgtgtacagcttcggcgtgctgctgctcgagctcgtcaccgggcgggaggccatctgcgcccagacggggcaccggctcaccgccgccgtggggccctcgatcggcgagggcaagctggccgacgtggtggaccggaggttgggaggtgactacgacgtcgaggaggccgccaccgtggcggcgctggcgctgcggtgcgtcagcgacggcaccgggctccgcccgtccatggcggaggtggtgcgcgagctgcaggagaagacgacggcgttgatctcagccgtcggatccaaaccaagcgataagatggtttcatga
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| Protein seq | MLDGCGLLAFARCCCVGGGEMESDARVSDEPGCGGGGAGSVVEKGGGVVARRFGWAEIESVTGGFSSRVIGQGGFSTVYLASLTSSRLGAVKVQRSSERLHRAFCQERDVLLSLRHPHVVRLLGYCDERDEGVLVFEYAPNGDLHERLHHRSGGKSRTVLPWARRMAVAFQVAMALEYLHESRDPAVIHGDIKSSNVLLDANHDAKLCDFGFAHVGFSAAVRPPSGATRAWGRPVMGSPGYADPHFLRSGVATKKSDVYSFGVLLLELVTGREAICAQTGHRLTAAVGPSIGEGKLADVVDRRLGGDYDVEEAATVAALALRCVSDGTGLRPSMAEVVRELQEKTTALISAVGSKPSDKMVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.171401 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0648100 | RBH | 0.0 | 0.0 | 1.139703 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43290 | RBH | 0.0 | 0.0 | 0.276795 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0648100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027060 | RBH | 0.0 | 0.000000 | 0.864969 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027170 | RBH | 0.000000 | 4.761703 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027020 | RBH | 0.0 | 6.367520 | 1.807963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026610 | RBH | 0.0 | 0.237716 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026710 | RBH | 0.000000 | 14.849079 | 1.497692 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0424300 | RBH | 0.4162825 | 25.9095995 | 0.1919455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026530 | RBH | 0.0 | 0.549029 | 0.084821 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0453000 | RBH | 0.728742 | 8.8247375 | 0.2808045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021250 | RBH | 0.0 | 0.222434 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026550 | RBH | 0.0 | 8.676341 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026910 | RBH | 0.0 | 4.351645 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026730 | RBH | 0.0 | 0.707815 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026420 | RBH | 0.0 | 5.965120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027030 | RBH | 0.0 | 0.612975 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026760 | RBH | 0.0 | 9.987422 | 0.000000 |
