Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019770 | OGI:04078120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27391751-27394495 | ||||||||
| Gene Symbol | OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7 | ||||||||||
| DNA seq | aacgtttataaactgcgtcctattttagtataatcatgttcataaaccaaatggcatgacactctgacagtaacagatgaacttcttctgactgtttggagttctctcacgaattgaccatggaaaagtatcacaaattacaccctttaacttacatcaacagcagttttagtagctgcctgcctctatgcaaattgctaaatttggctatggcatcgtaacttccaaagaacgttgcaaacaagaacttaaaaaaaaatgaaagaaaaggcatacttattacagcatcagctaagcacatctgtgaacttctgaatttctgaaacacgctaatattttgctatcttctcgtcggtcctctgttcagcaatcagcagatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgcttgccctggttcatggcgacgaacaccttgttcacctcctcgccgggcgaccgcgtcttctccccggtcaagtactctgtcccgagctcctcgcggacgaaccggtagagcgggtacgacctgcactcggtgatcctgttcgcctttgcggcggtgccgttctccacggccgcacgggcagcctccacctccctgggcagcgccacgcggagctcctcctcgaacgtcgcgaccttggcgaacaccgaggtgtcgacgttgcgctccgcctcgccgttggccagcgcgtgctcgatgaggacggcgcgcatcttctgcatcagcgggtagttggcgctgcaggggtcgtccgcgtacgcgaacacggcctcgcggtcgatcgcctggagcaggtccttctcgcagaaccgggccttgtggaggtcgccggtggcgctggtgctcagggtcttcctcgccaccgtcgtcacgcagcccttgacggcgctcctgacgttctcttcgaggtggcgcaggtcgatggcctggcatagcgcgatcaagaacgtcgaggacatgagcttgagcacgtcgatggcctcggccgtcttcctggacgagatgaggccgagagagttgacgtcttggttgtgctgctccgcgctctggacatggttggtcacagggttggccaagaactggagctcagagcagtacgatgccatggcgatctcggcacccttgaagccgtagtccaagctcgggttgcgcccaccggacaggttggacggcaggccgttgttgtagaaatcgttcacgagctcagagaactgcgcgaacatgagcttaccgatcgcggcaatggcgagcctggtgttgtccatggacacgccgatgggtgtgccctggaagttgccgccgtggagcgccttgccacgggagacgtcaatgagcgggttgtcgttgacggagttgatctcgcgctcgatcgacttggtggcggcacggatgacctcaatctgggggccgagccattgcggcgacgtgcggagcgcgtacctgtcttgcttgggcttcatcagcgggtcgagctcgccgagcttcttcgccagcatcatgtaggagctcccctccaagatgtgctccataatggcggctgcctcaatctgtcccgggtggtgcttaagcttgtgcgtcaggtggtcggtgtactccggcttgccgttcatgacctcgcagaacaccgcggagaggacctccgcgagcacgccaaggacgttcgcctcaaagagcaccatcgaggcgagcccggagccgacggccgtgccgttcaccatggcgaggccttccttgggctggagctcgaagaagccgtgctggatgccggcgatcttgaacgcctccgcggcatccaccttcctgccatcgggcgtcaccgccacagagtttggtcggccggtgacgagtcccgcgatgtaggagagcgggacgaggtcgccggacgcggtgatcgtgccccggagcggcaagcacggcgtcacgttggcgttaagcagcgtggcgatcgtctcgaggatctcgaaccggatgccagagtacccctggagcagagtgttgatgcggacgagcatggctgcccgcgtcgccgcgGCCggcagcacgtggccgtcgtcgccgttgccgaacgccccggcattaagaaacctgtcatggcaaccattacaggaacacacgttaggcctctgatccacacaagctctcaccagacgaacagcaaactcttgcggcttcttaccggataagctctcgctggagcgcgccgccctccttggtcctccggtggGAggtggcgccgaagccggtggtgacgccgtagctgtcggtgccgttcatcatgctgttcatgacccagtcgctgctggccttgacgcggccgcgggcggactcgtcgagctccaccctggcggcgccggcggaggccaccgccgcgacctgcgcgatggtcaggctggcgccctcgatcgtcaccacgggcctgcggtactcctccaccatgcgcttcaccgcgtccagatggctcccggacagctcctccgccgccttCccccagttgagcgggtcggcacgcggcttagccacgcacaggctgctgccgttggcggcggcggcgacgtgcccgttctcgcactccatcggaacggcgaagcagaggggagatcgatgtgtagctgtaacgagtggtggttgctcgagcggtttgctcccgatggaggtggaggagttgtgtgtgcggaagagccggggatatggaagctgcagtggctttgctctt
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| CDS seq | atggagtgcgagaacgggcacgtcgccgccgccgccaacggcagcagcctgtgcgtggctaagccgcgtgccgacccgctcaactggggGaaggcggcggaggagctgtccgggagccatctggacgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgccagcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatgaacggcaccgacagctacggcgtcaccaccggcttcggcgccaccTCccaccggaggaccaaggagggcggcgcgctccagcgagagcttatccggtttcttaatgccggggcgttcggcaacggcgacgacggccacgtgctgccGGCcgcggcgacgcgggcagccatgctcgtccgcatcaacactctgctccaggggtactctggcatccggttcgagatcctcgagacgatcgccacgctgcttaacgccaacgtgacgccgtgcttgccgctccggggcacgatcaccgcgtccggcgacctcgtcccgctctcctacatcgcgggactcgtcaccggccgaccaaactctgtggcggtgacgcccgatggcaggaaggtggatgccgcggaggcgttcaagatcgccggcatccagcacggcttcttcgagctccagcccaaggaaggcctcgccatggtgaacggcacggccgtcggctccgggctcgcctcgatggtgctctttgaggcgaacgtccttggcgtgctcgcggaggtcctctccgcggtgttctgcgaggtcatgaacggcaagccggagtacaccgaccacctgacgcacaagcttaagcaccacccgggacagattgaggcagccgccattatggagcacatcttggaggggagctcctacatgatgctggcgaagaagctcggcgagctcgacccgctgatgaagcccaagcaagacaggtacgcgctccgcacgtcgccgcaatggctcggcccccagattgaggtcatccgtgccgccaccaagtcgatcgagcgcgagatcaactccgtcaacgacaacccgctcattgacgtctcccgtggcaaggcgctccacggcggcaacttccagggcacacccatcggcgtgtccatggacaacaccaggctcgccattgccgcgatcggtaagctcatgttcgcgcagttctctgagctcgtgaacgatttctacaacaacggcctgccgtccaacctgtccggtgggcgcaacccgagcttggactacggcttcaagggtgccgagatcgccatggcatcgtactgctctgagctccagttcttggccaaccctgtgaccaaccatgtccagagcgcggagcagcacaaccaagacgtcaactctctcggcctcatctcgtccaggaagacggccgaggccatcgacgtgctcaagctcatgtcctcgacgttcttgatcgcgctatgccaggccatcgacctgcgccacctcgaagagaacgtcaggagcgccgtcaagggctgcgtgacgacggtggcgaggaagaccctgagcaccagcgccaccggcgacctccacaaggcccggttctgcgagaaggacctgctccaggcgatcgaccgcgaggccgtgttcgcgtacgcggacgacccctgcagcgccaactacccgctgatgcagaagatgcgcgccgtcctcatcgagcacgcgctggccaacggcgaggcggagcgcaacgtcgacacctcggtgttcgccaaggtcgcgacgttcgaggaggagctccgcgtggcgctgcccagggaggtggaggctgcccgtgcggccgtggagaacggcaccgccgcaaaggcgaacaggatcaccgagtgcaggtcgtacccgctctaccggttcgtccgcgaggagctcgggacagagtacttgaccggggagaagacgcggtcgcccggcgaggaggtgaacaaggtgttcgtcgccatgaaccagggcaagcacatcgacgcactgctcgagtgcctcaaggagtggaacggcgagcctctgcccatctgctga
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| Protein seq | MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEGASLTIAQVAAVASAGAARVELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEELRVALPREVEAARAAVENGTAAKANRITECRSYPLYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC |
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| Function | Phenylalanine ammonia-lyase [UniProtKB/Swiss-Prot:Q43210] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019770 | OsLima_04g0019770.01 | Chr04 | 27391751 | 27394495 | - | NAM | ||
| CDS seq | atggagtgcgagaacgggcacgtcgccgccgccgccaacggcagcagcctgtgcgtggctaagccgcgtgccgacccgctcaactggggGaaggcggcggaggagctgtccgggagccatctggacgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgccagcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatgaacggcaccgacagctacggcgtcaccaccggcttcggcgccaccTCccaccggaggaccaaggagggcggcgcgctccagcgagagcttatccggtttcttaatgccggggcgttcggcaacggcgacgacggccacgtgctgccGGCcgcggcgacgcgggcagccatgctcgtccgcatcaacactctgctccaggggtactctggcatccggttcgagatcctcgagacgatcgccacgctgcttaacgccaacgtgacgccgtgcttgccgctccggggcacgatcaccgcgtccggcgacctcgtcccgctctcctacatcgcgggactcgtcaccggccgaccaaactctgtggcggtgacgcccgatggcaggaaggtggatgccgcggaggcgttcaagatcgccggcatccagcacggcttcttcgagctccagcccaaggaaggcctcgccatggtgaacggcacggccgtcggctccgggctcgcctcgatggtgctctttgaggcgaacgtccttggcgtgctcgcggaggtcctctccgcggtgttctgcgaggtcatgaacggcaagccggagtacaccgaccacctgacgcacaagcttaagcaccacccgggacagattgaggcagccgccattatggagcacatcttggaggggagctcctacatgatgctggcgaagaagctcggcgagctcgacccgctgatgaagcccaagcaagacaggtacgcgctccgcacgtcgccgcaatggctcggcccccagattgaggtcatccgtgccgccaccaagtcgatcgagcgcgagatcaactccgtcaacgacaacccgctcattgacgtctcccgtggcaaggcgctccacggcggcaacttccagggcacacccatcggcgtgtccatggacaacaccaggctcgccattgccgcgatcggtaagctcatgttcgcgcagttctctgagctcgtgaacgatttctacaacaacggcctgccgtccaacctgtccggtgggcgcaacccgagcttggactacggcttcaagggtgccgagatcgccatggcatcgtactgctctgagctccagttcttggccaaccctgtgaccaaccatgtccagagcgcggagcagcacaaccaagacgtcaactctctcggcctcatctcgtccaggaagacggccgaggccatcgacgtgctcaagctcatgtcctcgacgttcttgatcgcgctatgccaggccatcgacctgcgccacctcgaagagaacgtcaggagcgccgtcaagggctgcgtgacgacggtggcgaggaagaccctgagcaccagcgccaccggcgacctccacaaggcccggttctgcgagaaggacctgctccaggcgatcgaccgcgaggccgtgttcgcgtacgcggacgacccctgcagcgccaactacccgctgatgcagaagatgcgcgccgtcctcatcgagcacgcgctggccaacggcgaggcggagcgcaacgtcgacacctcggtgttcgccaaggtcgcgacgttcgaggaggagctccgcgtggcgctgcccagggaggtggaggctgcccgtgcggccgtggagaacggcaccgccgcaaaggcgaacaggatcaccgagtgcaggtcgtacccgctctaccggttcgtccgcgaggagctcgggacagagtacttgaccggggagaagacgcggtcgcccggcgaggaggtgaacaaggtgttcgtcgccatgaaccagggcaagcacatcgacgcactgctcgagtgcctcaaggagtggaacggcgagcctctgcccatctgctga
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| Protein seq | MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEGASLTIAQVAAVASAGAARVELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEELRVALPREVEAARAAVENGTAAKANRITECRSYPLYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0518400 | RBH | 5.009432 | 3.701982 | 0.256578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43800 | RBH | 3.302433 | 2.399154 | 0.063435 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0518400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020060 | RBH | 0.0 | 0.988751 | 0.238964 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020850 | RBH | 0.0 | 0.810404 | 0.360635 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020560 | RBH | 0.0 | 0.0 | 0.748416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020480 | RBH | 0.0 | 3.252725 | 4.202736 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0405400 | RBH | 2.9031695 | 4.1269035 | 0.1314955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019280 | RBH | 0.072792 | 0.060436 | 0.092567 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0406400 | RBH | 26.4058215 | 26.1866265 | 0.115645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025560 | RBH | 0.374770 | 1.737443 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019740 | RBH | 0.0 | 4.758287 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020110 | RBH | 0.138674 | 0.0 | 0.172906 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020280 | RBH | 0.044486 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019550 | RBH | 0.345449 | 0.0 | 0.267402 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019520 | RBH | 0.000000 | 0.000000 | 0.0 |
