Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025560 | OGI:02070950 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26764556-26767119 | ||||||||
| Gene Symbol | PAL1, OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6 | ||||||||||
| DNA seq | gaaacctgccactcgtaccaagttttgctgttgcatgcttgccgctatgcaacgaagaattcttttgagtaacacaaagataagtgtaaaaataaaatattcaccagataaaaacaacaccgcacgcctccacactccactgttattcagctaatcggttcactagttcagcagattggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttgccttcgttgatagccacaagaaccttgttcagctcctcgccaggcgatcgtgtcttctcgccggtcaggtactttgttccgagctcctcgcgcacgaaccggtagagcggatacgacctgcactcggtgattctgctgggaatcgccgccgtgccgttctccacagccgcacgtgcggcctcgatcgcacctggcagagtcgcgcgcagctcctcctcgaactgcgcgaccttggcgaacaccgaggtgtcggcgttgaactcggccgcgccgttggcgagggcgcgctccacgagcacgttgcgcagcttcttcatcagcgggtagttgtggctgcacgggtcgtccgcgtacgcgaacaccgcctcgcggtcgatctccttgagcaggtccttctcgcagaagcgtgcgacgtggagatcgccggtggagttggtgctgagtgtcttcttggccaccgtcatgacgcagctcttgacggcgctcttgacgttctcctcgatgtgccgcaggtcgacggcctggcagagggcgatcaagaacgtggaggacatgagcttcaggatgtcgattgcctcggcggtcttcctggaggagatgagtccaagagagttgacgtcctggttgtgctgctcggcgctctggacgtggttggtcactgggttgcccaagaactgcagctcggagcagtaggaggccatggcgatctcggcgcccttgaacccgtagtccaagctcgggttgcgaccgccagacaggttggatggcaggccgttgttgtagaagtcgttcacgagctccgagaactgcgcgaacatgagcttgccgatggcagcgatggcgaggcgggtgttgtccatggacacgccgatgggcgtgccctggaagttgccaccgtgcagcgccttgccgcgggagacgtcgatgagcgggttgtcgttcacggagttgatctcacgctcgatggacttggtggcggcgcggataacctcaatttgagggccgagccactgtggggatgtccggagcgcgtaccggtcttgcttcggcttcatcagtgggtcgagctcaccaagcttcttggcatgcttcatgtaggagcttccctccaagatgtgctccatgatggcggcggcctcgatctgtcctggatggtgcttgagcttgtgagtcaggtggtcggtgtactccggcttgccgttcatcacctcgcagaacacggccgagaggacctcggcgaggatggcaagaatgttagcctcaaagagcacggtcgatgcaaggccagagcccacggcagtgccattgaccatggcaaggccttccttgggctgcagctcgaagaagccgccctggatgccagcaatcttgaacgcctcagcggcgttcaccttgctgccatctggtgcaaccgccacggcgttctcgcgcccagtgacaaggccggcaatgtaggacagcgggacgaggtcaccggaggcggtgatcgtgccccggagcggcaggcacggtgtgacgttcgcgttgagcagcttggcgatcgcctcgaggatctcgaaccggatgccggagtatccctggaggagtgtgttgatgcggacgagcattgccgcgcgggttgcctccgccggcaaaacatgaccgtcggtgccagtgccgaacgcgccggcattgaggaatctgccgagaaaacaagcaaatttataattaagaaggcgtccaaagaatttgcacagtaaactgaactaatcgcagtgaccaggtaaacgttactgcttatttggaatcctaatcctcacctgatgagctctctttgcagagcaccaccctccttggtcctcctgtgggacgtggcgccgaaaccggtggtgacaccgtagctgtccgtgccgttcatcatgctgttcatcacccagtcgctgctggccttgacgcgctcgcgggccgactcgtcgagctccaccctggcctcgccggccgcggccaccgcggcgacctgcgcgatcctcaggctagcgccctcgatcttgaccagaggctggcggtactccgccaccatcctcttcacctcgtcgaggtggctccccgtcatctcctccgtggccttcccccagttcagcgggtcggcgcggggcgccgcgacgcagagaccactcatgccattggcagaaacgcggccgttctcgcactccatttcagtaccagaagatggatcggttaacctagcacagaaagcgtcgagagaagagtatataatggttctagctactcgattagctgttgtgaagaagagctagtgtactactgcactggatggtgcggctcttctt
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| CDS seq | atggagtgcgagaacggccgcgtttctgccaatggcatgagtggtctctgcgtcgcggcgccccgcgccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgaggtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctgaggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgagtcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggcacggacagctacggtgtcaccaccggtttcggcgccacgtcccacaggaggaccaaggagggtggtgctctgcaaagagagctcatcagattcctcaatgccggcgcgttcggcactggcaccgacggtcatgttttgccggcggaggcaacccgcgcggcaatgctcgtccgcatcaacacactcctccagggatactccggcatccggttcgagatcctcgaggcgatcgccaagctgctcaacgcgaacgtcacaccgtgcctgccgctccggggcacgatcaccgcctccggtgacctcgtcccgctgtcctacattgccggccttgtcactgggcgcgagaacgccgtggcggttgcaccagatggcagcaaggtgaacgccgctgaggcgttcaagattgctggcatccagggcggcttcttcgagctgcagcccaaggaaggccttgccatggtcaatggcactgccgtgggctctggccttgcatcgaccgtgctctttgaggctaacattcttgccatcctcgccgaggtcctctcggccgtgttctgcgaggtgatgaacggcaagccggagtacaccgaccacctgactcacaagctcaagcaccatccaggacagatcgaggccgccgccatcatggagcacatcttggagggaagctcctacatgaagcatgccaagaagcttggtgagctcgacccactgatgaagccgaagcaagaccggtacgcgctccggacatccccacagtggctcggccctcaaattgaggttatccgcgccgccaccaagtccatcgagcgtgagatcaactccgtgaacgacaacccgctcatcgacgtctcccgcggcaaggcgctgcacggtggcaacttccagggcacgcccatcggcgtgtccatggacaacacccgcctcgccatcgctgccatcggcaagctcatgttcgcgcagttctcggagctcgtgaacgacttctacaacaacggcctgccatccaacctgtctggcggtcgcaacccgagcttggactacgggttcaagggcgccgagatcgccatggcctcctactgctccgagctgcagttcttgggcaacccagtgaccaaccacgtccagagcgccgagcagcacaaccaggacgtcaactctcttggactcatctcctccaggaagaccgccgaggcaatcgacatcctgaagctcatgtcctccacgttcttgatcgccctctgccaggccgtcgacctgcggcacatcgaggagaacgtcaagagcgccgtcaagagctgcgtcatgacggtggccaagaagacactcagcaccaactccaccggcgatctccacgtcgcacgcttctgcgagaaggacctgctcaaggagatcgaccgcgaggcggtgttcgcgtacgcggacgacccgtgcagccacaactacccgctgatgaagaagctgcgcaacgtgctcgtggagcgcgccctcgccaacggcgcggccgagttcaacgccgacacctcggtgttcgccaaggtcgcgcagttcgaggaggagctgcgcgcgactctgccaggtgcgatcgaggccgcacgtgcggctgtggagaacggcacggcggcgattcccagcagaatcaccgagtgcaggtcgtatccgctctaccggttcgtgcgcgaggagctcggaacaaagtacctgaccggcgagaagacacgatcgcctggcgaggagctgaacaaggttcttgtggctatcaacgaaggcaagcacatcgacccgttgctcgagtgcctcaaggagtggaacggcgagcccctgccaatctgctga
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| Protein seq | MECENGRVSANGMSGLCVAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC |
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| Function | Phenylalanine ammonia-lyase [UniProtKB/Swiss-Prot:A2X7F7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025560 | OsLima_02g0025560.01 | Chr02 | 26764595 | 26767119 | - | NAM | ||
| CDS seq | atggagtgcgagaacggccgcgtttctgccaatggcatgagtggtctctgcgtcgcggcgccccgcgccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgaggtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctgaggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgagtcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggcacggacagctacggtgtcaccaccggtttcggcgccacgtcccacaggaggaccaaggagggtggtgctctgcaaagagagctcatcagattcctcaatgccggcgcgttcggcactggcaccgacggtcatgttttgccggcggaggcaacccgcgcggcaatgctcgtccgcatcaacacactcctccagggatactccggcatccggttcgagatcctcgaggcgatcgccaagctgctcaacgcgaacgtcacaccgtgcctgccgctccggggcacgatcaccgcctccggtgacctcgtcccgctgtcctacattgccggccttgtcactgggcgcgagaacgccgtggcggttgcaccagatggcagcaaggtgaacgccgctgaggcgttcaagattgctggcatccagggcggcttcttcgagctgcagcccaaggaaggccttgccatggtcaatggcactgccgtgggctctggccttgcatcgaccgtgctctttgaggctaacattcttgccatcctcgccgaggtcctctcggccgtgttctgcgaggtgatgaacggcaagccggagtacaccgaccacctgactcacaagctcaagcaccatccaggacagatcgaggccgccgccatcatggagcacatcttggagggaagctcctacatgaagcatgccaagaagcttggtgagctcgacccactgatgaagccgaagcaagaccggtacgcgctccggacatccccacagtggctcggccctcaaattgaggttatccgcgccgccaccaagtccatcgagcgtgagatcaactccgtgaacgacaacccgctcatcgacgtctcccgcggcaaggcgctgcacggtggcaacttccagggcacgcccatcggcgtgtccatggacaacacccgcctcgccatcgctgccatcggcaagctcatgttcgcgcagttctcggagctcgtgaacgacttctacaacaacggcctgccatccaacctgtctggcggtcgcaacccgagcttggactacgggttcaagggcgccgagatcgccatggcctcctactgctccgagctgcagttcttgggcaacccagtgaccaaccacgtccagagcgccgagcagcacaaccaggacgtcaactctcttggactcatctcctccaggaagaccgccgaggcaatcgacatcctgaagctcatgtcctccacgttcttgatcgccctctgccaggccgtcgacctgcggcacatcgaggagaacgtcaagagcgccgtcaagagctgcgtcatgacggtggccaagaagacactcagcaccaactccaccggcgatctccacgtcgcacgcttctgcgagaaggacctgctcaaggagatcgaccgcgaggcggtgttcgcgtacgcggacgacccgtgcagccacaactacccgctgatgaagaagctgcgcaacgtgctcgtggagcgcgccctcgccaacggcgcggccgagttcaacgccgacacctcggtgttcgccaaggtcgcgcagttcgaggaggagctgcgcgcgactctgccaggtgcgatcgaggccgcacgtgcggctgtggagaacggcacggcggcgattcccagcagaatcaccgagtgcaggtcgtatccgctctaccggttcgtgcgcgaggagctcggaacaaagtacctgaccggcgagaagacacgatcgcctggcgaggagctgaacaaggttcttgtggctatcaacgaaggcaagcacatcgacccgttgctcgagtgcctcaaggagtggaacggcgagcccctgccaatctgctga
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| Protein seq | MECENGRVSANGMSGLCVAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025560 | OsLima_02g0025560.02 | Chr02 | 26764556 | 26764778 | - | IsoSeq | ||
| CDS seq | acccgttgctcgagtgcctcaaggagtggaacggcgagcccctgccaatctgctgaactagtgaaccgattagct |
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| Protein seq | TRCSSASRSGTASPCQSAELVNRLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.374770 | 1.737443 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0627100 | RBH | 1.010310 | 0.623948 | 20.385693 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41680 | RBH | 0.715708 | 0.397979 | 5.142868 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0627100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025800 | RBH | 0.0 | 21.849737 | 10.749377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025940 | RBH | 0.101313 | 11.780896 | 7.003835 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025760 | RBH | 0.332134 | 5.894800 | 14.380122 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025370 | RBH | 0.0 | 0.334592 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025480 | RBH | 2.294948 | 13.350299 | 79.836533 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0406400 | RBH | 9.559026 | 64.5820655 | 1.0750995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025360 | RBH | 0.0 | 1.660222 | 5.049543 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0435200 | RBH | 15.8412435 | 56.051241 | 0.316075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025350 | RBH | 0.0 | 18.937897 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025680 | RBH | 0.0 | 26.646290 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025580 | RBH | 0.108784 | 1.968115 | 5.464331 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025150 | RBH | 0.046556 | 6.666536 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025760 | RBH | 0.061823 | 0.689630 | 8.469008 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025590 | RBH | 0.187400 | 39.691956 | 39.507996 |
