Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019530 | OGI:04077590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27167485-27171365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccagcaattcaataaagaattctttaaattttggactatgaagtcaggaacagaaatcactgaggagaaagtgatttgtgataggattttgccaaatagcagacaacatcttgcatatttttggaattacagtgacttagctgatagtgacaaaatgtggcctttcacatatattcgttgagagaataattttatgtgaaaactaaatagaatcttactttgctgtttggactgtttctgacataacaattaacttgagtaggttcttttccaaatatggccagttgtcctccgtccaaataatcctctgaggatcatttctggaacaagaaacataggcaaaggtgaagtaagatgaccaaagtagggtttttgaacgagagcagggaaaaaagttggggcaaaagcaatacaatgttctaacaacctaggtattgaaatactgcttacagatgaaaaatagcaggcccattgtcatgtccacttctgatatttgccaatccaatatcacctagcggtgctgatccttttcaaagtctggtgctgcaattgcagcaagtaaagcaattattggtacgagtatatgtacttttgaataaataatatgcataacattccaaatctctcaactaaacatgcatttattgaaggtcctcgatgatccagaagatgaattaaggccctttgctcttaagcagcaccagcacactcaagcaagcatttcagctgaataaagtagaccatactcatcaatatcgttatctttcttcatcattccagttagatcaccaagcaTttcatagattctaagattgtcagggtggtatttatcctgtacaagaaacaagcttgtcttgtttcccacggtaatccaactacatcctggaaattttgccactcctttttctcgcattgattctctggttaccttagcttcagcccagttaccagtagcagcatgtaagcttgaaagcaacacatatgtagatgagtattgtggttccaactcaacaagtttccttgctgcaaTtttccccctttcttcatccttgtgcattctgcatgctgcaagatacgtagcccagaccacaccatcaggtctgaaaggcaactggtcaatagcttcttgggcctcttgaagatgaccaccacgtccaaggagatcaataaaacaggcataatgatctagtctaggtgttaatccataaacttttctcatggaaccaaagaaatgccgaccttcagaaattagcccagaatgagtacaagcaattaggacacctaggaatgtaacttcgtcaggctttatctgcaactcctccatcttctggaaaagcagaagtgcctcatcagcataaccattttttgcaaatccaacaatcatagagttccatggcattatatcttgtttgtttttcaattctttgaaggcttcaaaggaagaaatgacatccccacacttggaatacatgtctatgagggcactagttgcagtttcataagaaccaaacccagatttagtgatgaggccatgtatctctttcccatctgcaaaagccgttacatccgaacaagctttaagaacacttgcaaatgttgcctcatccgagcgaacattacaatgacgcattctccaaaatgacaccaaagagtgatcaccataaccattttgagcataccctgaaatgatagctgtccactcaaacaggtttttgtgatctggcatttctgttaagagtttatttgcatcctcaagcattttggacttcaaatatattccagccaatgaaacaccaaggagagtATCatcatatagaacaccagacttcagtgtgtaacaatgaacttgcttgccaatagctgaattaagagatccactacagccagaaagaatgcttgaaaatgtaacactggagggctttaaaccatcttttagaacttgctgaaacagttgtattgcttcatcttcattattgttctgcacAaaacctgcaattaaagcatttattggcactatactactcgcatctacttgtgcaaaaatcttcctagaagactctacatctccatgctttgaatacaagtcaatcagagagctaccaacagcatgatttgagcagataccatatttgatggccaggcaatggatctgctttccagtttcagtggctcggatattggaacaagcattaattgcagtagaaaaagatacatcatcgggtgttataccatgcagcctcatccttttgagcatacacactgcttcttcctcctctaggttctgtgcaagtcctactgtaagggcattccaggatatactatccttgtaagggattagactgaatagtgcctttgcatcaccaattgctccatattttgagtacatatctagtgttgcattagcaacaaacaagcttatatccatgcagttcttgattgttacacaatgtacttgttttcccagataaaaggaactcaagtaggtgcatgcaccaagaatactgacaaacgtaaattcatcggtttgaagggtatacctcatcatatactgaaacattctaatagcttcctctggcaattcattctgaacaaaacctgtgagcatagcgttccacatgacaatgttcTtttcacaggacaagtcgaaaacattcttcgcgtcactggggcagccacatttagcatacaggttgatcagagaacttcccacaaatacatttgcatccaagccatgcattactgctgcagcatgcatctgctggccttcaacaaaagctttcatgttagccgctgcacttagcatgcttgcaaaagttgatctagtgggccataacccccagctcctcatatccttgtacaagccaagcacattaaactcgagtccactttgtgcgtgaccagagatgacagcattccaagcaactgtgcttggtgtaggcatcttcttcagcaaagctgttgcatggtccagcctgcccgagcttgcaagtgtggaaatgatggtaacaagtgtcacttgatccggagcagagcccatcttatccatcctagaaaacaaagccaacgcttcctggtagcatccaactcgatgatagcaagcaatcatgcttgaccagcatattgtgtctgggcaagcaatcccatcaaacaccctgcgagcattgggcacatcaccgcatttggcatacatgtccaccaacgccgcttcgcagaagacactggaactgaacccgctcttgaccacatcgcaatgcacctgcctgccgtaagcaagaacacccaccctggaacacgccgacagaacgaccgcaagaccaaactggtccggccggccaccggcagtgcacctgatataccggaacgcgCcgagaacatccccaggggaccccgaccgcgcatggcaggacagcagggagctcgccgcgcctgaagcccgctccccggcgtatcccagggcgctccaggcatagcccacacggccggacttgcagtacagttcgacgagcgagtcgccgaggcgtcccaggaggggtgatccgccgcgcagtatccggccgtgcaaggccctgcatgtctgcgagtggcgggctctcgggggacttgcgtcgaacgggtggcgggcgtggcactctctggagagggaggagaggaggctggcgtaggaggaggcgtcggggtgggatccgagcgccgcgacggcggcgggggcgagccgaaacggaggaggaggaggaggaggaggctggttggctctcggtttgggcgcgaggcggacgcgggcggcggagcgcatgtgtgcacggccgcggccgccgccgcatgtgcgcagtgtgcgttggggacttggggggttgagaccgcagctctctcccacaatctc
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| CDS seq | atgcgctccgccgcccgcgtccgcctcgcgcccaaaccgagagccaaccagcctcctcctcctcctcctcctccgtttcggctcgcccccgccgccgtcgcggcgctcggatcccaccccgacgcctcctcctacgccagcctcctctcctccctctccagagagtgccacgcccgccacccgttcgacgcaagtcccccgagagcccgccactcgcagacatgcagggccttgcacggccggatactgcgcggcggatcacccctcctgggacgcctcggcgactcgctcgtcgaactgtactgcaagtccggccgtgtgggctatgcctggagcgccctgggatacgccggggagcgggcttcaggcgcggcgagctccctgctgtcctgccatgcgcggtcggggtcccctggggatgttctcgGcgcgttccggtatatcaggtgcactgccggtggccggccggaccagtttggtcttgcggtcgttctgtcggcgtgttccagggtgggtgttcttgcttacggcaggcaggtgcattgcgatgtggtcaagagcgggttcagttccagtgtcttctgcgaagcggcgttggtggacatgtatgccaaatgcggtgatgtgcccaatgctcgcagggtgtttgatgggattgcttgcccagacacaatatgctggtcaagcatgattgcttgctatcatcgagttggatgctaccaggaagcgttggctttgttttctaggatggataagatgggctctgctccggatcaagtgacacttgttaccatcatttccacacttgcaagctcgggcaggctggaccatgcaacagctttgctgaagaagatgcctacaccaagcacagttgcttggaatgctgtcatctctggtcacgcacaaagtggactcgagtttaatgtgcttggcttgtacaaggatatgaggagctgggggttatggcccactagatcaacttttgcaagcatgctaagtgcagcggctaacatgaaagcttttgttgaaggccagcagatgcatgctgcagcagtaatgcatggcttggatgcaaatgtatttgtgggaagttctctgatcaacctgtatgctaaatgtggctgccccagtgacgcgaagaatgttttcgacttgtcctgtgaaaAgaacattgtcatgtggaacgctatgctcacaggttttgttcagaatgaattgccagaggaagctattagaatgtttcagtatatgatgaggtatacccttcaaaccgatgaatttacgtttgtcagtattcttggtgcatgcacctacttgagttccttttatctgggaaaacaagtacattgtgtaacaatcaagaactgcatggatataagcttgtttgttgctaatgcaacactagatatgtactcaaaatatggagcaattggtgatgcaaaggcactattcagtctaatcccttacaaggatagtatatcctggaatgcccttacagtaggacttgcacagaacctagaggaggaagaagcagtgtgtatgctcaaaaggatgaggctgcatggtataacacccgatgatgtatctttttctactgcaattaatgcttgttccaatatccgagccactgaaactggaaagcagatccattgcctggccatcaaatatggtatctgctcaaatcatgctgttggtagctctctgattgacttgtattcaaagcatggagatgtagagtcttctaggaagatttttgcacaagtagatgcgagtagtatagtgccaataaatgctttaattgcaggtttTgtgcagaacaataatgaagatgaagcaatacaactgtttcagcaagttctaaaagatggtttaaagccctccagtgttacattttcaagcattctttctggctgtagtggatctcttaattcagctattggcaagcaagttcattgttacacactgaagtctggtgttctatatgatGATactctccttggtgtttcattggctggaatatatttgaagtccaaaatgcttgaggatgcaaataaactcttaacagaaatgccagatcacaaaaacctgtttgagtggacagctatcatttcagggtatgctcaaaatggttatggtgatcactctttggtgtcattttggagaatgcgtcattgtaatgttcgctcggatgaggcaacatttgcaagtgttcttaaagcttgttcggatgtaacggcttttgcagatgggaaagagatacatggcctcatcactaaatctgggtttggttcttatgaaactgcaactagtgccctcatagacatgtattccaagtgtggggatgtcatttcttcctttgaagccttcaaagaattgaaaaacaaacaagatataatgccatggaactctatgattgttggatttgcaaaaaatggttatgctgatgaggcacttctgcttttccagaagatggaggagttgcagataaagcctgacgaagttacattcctaggtgtcctaattgcttgtactcattctgggctaatttctgaaggtcggcatttctttggttccatgagaaaagtttatggattaacacctagactagatcattatgcctgttttattgatctccttggacgtggtggtcatcttcaagaggcccaagaagctattgaccagttgcctttcagacctgatggtgtggtctgggctacgtatcttgcagcatgcagaatgcacaaggatgaagaaagggggaaaAttgcagcaaggaaacttgttgagttggaaccacaatactcatctacatatgtgttgctttcaagcttacatgctgctactggtaactgggctgaagctaaggataaataccaccctgacaatcttagaatctatgaaAtgcttggtgatctaactggaatgatgaagaaagataacgatattgatgagtatggtctactttattcagctgaaatgcttgcttga
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| Protein seq | MRSAARVRLAPKPRANQPPPPPPPPFRLAPAAVAALGSHPDASSYASLLSSLSRECHARHPFDASPPRARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKDKYHPDNLRIYEMLGDLTGMMKKDNDIDEYGLLYSAEMLA |
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| Function | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial [UniProtKB/Swiss-Prot:Q9SS83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019530 | OsLima_04g0019530.01 | Chr04 | 27167485 | 27171365 | - | NAM | ||
| CDS seq | atgcgctccgccgcccgcgtccgcctcgcgcccaaaccgagagccaaccagcctcctcctcctcctcctcctccgtttcggctcgcccccgccgccgtcgcggcgctcggatcccaccccgacgcctcctcctacgccagcctcctctcctccctctccagagagtgccacgcccgccacccgttcgacgcaagtcccccgagagcccgccactcgcagacatgcagggccttgcacggccggatactgcgcggcggatcacccctcctgggacgcctcggcgactcgctcgtcgaactgtactgcaagtccggccgtgtgggctatgcctggagcgccctgggatacgccggggagcgggcttcaggcgcggcgagctccctgctgtcctgccatgcgcggtcggggtcccctggggatgttctcgGcgcgttccggtatatcaggtgcactgccggtggccggccggaccagtttggtcttgcggtcgttctgtcggcgtgttccagggtgggtgttcttgcttacggcaggcaggtgcattgcgatgtggtcaagagcgggttcagttccagtgtcttctgcgaagcggcgttggtggacatgtatgccaaatgcggtgatgtgcccaatgctcgcagggtgtttgatgggattgcttgcccagacacaatatgctggtcaagcatgattgcttgctatcatcgagttggatgctaccaggaagcgttggctttgttttctaggatggataagatgggctctgctccggatcaagtgacacttgttaccatcatttccacacttgcaagctcgggcaggctggaccatgcaacagctttgctgaagaagatgcctacaccaagcacagttgcttggaatgctgtcatctctggtcacgcacaaagtggactcgagtttaatgtgcttggcttgtacaaggatatgaggagctgggggttatggcccactagatcaacttttgcaagcatgctaagtgcagcggctaacatgaaagcttttgttgaaggccagcagatgcatgctgcagcagtaatgcatggcttggatgcaaatgtatttgtgggaagttctctgatcaacctgtatgctaaatgtggctgccccagtgacgcgaagaatgttttcgacttgtcctgtgaaaAgaacattgtcatgtggaacgctatgctcacaggttttgttcagaatgaattgccagaggaagctattagaatgtttcagtatatgatgaggtatacccttcaaaccgatgaatttacgtttgtcagtattcttggtgcatgcacctacttgagttccttttatctgggaaaacaagtacattgtgtaacaatcaagaactgcatggatataagcttgtttgttgctaatgcaacactagatatgtactcaaaatatggagcaattggtgatgcaaaggcactattcagtctaatcccttacaaggatagtatatcctggaatgcccttacagtaggacttgcacagaacctagaggaggaagaagcagtgtgtatgctcaaaaggatgaggctgcatggtataacacccgatgatgtatctttttctactgcaattaatgcttgttccaatatccgagccactgaaactggaaagcagatccattgcctggccatcaaatatggtatctgctcaaatcatgctgttggtagctctctgattgacttgtattcaaagcatggagatgtagagtcttctaggaagatttttgcacaagtagatgcgagtagtatagtgccaataaatgctttaattgcaggtttTgtgcagaacaataatgaagatgaagcaatacaactgtttcagcaagttctaaaagatggtttaaagccctccagtgttacattttcaagcattctttctggctgtagtggatctcttaattcagctattggcaagcaagttcattgttacacactgaagtctggtgttctatatgatGATactctccttggtgtttcattggctggaatatatttgaagtccaaaatgcttgaggatgcaaataaactcttaacagaaatgccagatcacaaaaacctgtttgagtggacagctatcatttcagggtatgctcaaaatggttatggtgatcactctttggtgtcattttggagaatgcgtcattgtaatgttcgctcggatgaggcaacatttgcaagtgttcttaaagcttgttcggatgtaacggcttttgcagatgggaaagagatacatggcctcatcactaaatctgggtttggttcttatgaaactgcaactagtgccctcatagacatgtattccaagtgtggggatgtcatttcttcctttgaagccttcaaagaattgaaaaacaaacaagatataatgccatggaactctatgattgttggatttgcaaaaaatggttatgctgatgaggcacttctgcttttccagaagatggaggagttgcagataaagcctgacgaagttacattcctaggtgtcctaattgcttgtactcattctgggctaatttctgaaggtcggcatttctttggttccatgagaaaagtttatggattaacacctagactagatcattatgcctgttttattgatctccttggacgtggtggtcatcttcaagaggcccaagaagctattgaccagttgcctttcagacctgatggtgtggtctgggctacgtatcttgcagcatgcagaatgcacaaggatgaagaaagggggaaaAttgcagcaaggaaacttgttgagttggaaccacaatactcatctacatatgtgttgctttcaagcttacatgctgctactggtaactgggctgaagctaaggataaataccaccctgacaatcttagaatctatgaaAtgcttggtgatctaactggaatgatgaagaaagataacgatattgatgagtatggtctactttattcagctgaaatgcttgcttga
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| Protein seq | MRSAARVRLAPKPRANQPPPPPPPPFRLAPAAVAALGSHPDASSYASLLSSLSRECHARHPFDASPPRARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKDKYHPDNLRIYEMLGDLTGMMKKDNDIDEYGLLYSAEMLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.168235 | 0.155888 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0514500 | RBH | 0.389683 | 0.577427 | 0.388083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43430 | RBH | 0.249681 | 0.378304 | 0.099572 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0514500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019820 | RBH | 0.050192 | 0.693301 | 0.920460 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020610 | RBH | 0.101822 | 0.852370 | 0.894658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020320 | RBH | 0.0 | 2.217709 | 2.930206 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020040 | RBH | 0.112984 | 0.108677 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020250 | RBH | 1.382874 | 2.546796 | 3.434600 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0402500 | SBH | 0.8996905 | 8.6084955 | 0.9512655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019050 | RBH | 0.181543 | 0.233934 | 0.202787 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0403000 | RBH | 4.1095115 | 5.483726 | 5.339249 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019380 | RBH | 0.160575 | 2.373476 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019500 | RBH | 1.865099 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019870 | RBH | 0.215597 | 0.211390 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020040 | RBH | 0.062386 | 1.089756 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019310 | RBH | 0.298048 | 2.059756 | 0.452179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019270 | RBH | 0.799456 | 3.745464 | 1.254060 |
