Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025210 | OGI:02070230 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26452248-26453840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatgcaaatgtagcctgcatttccattgtggtagctaacttatcaagagtgtcatagatatcgtctgactcagggtgaccatcatcaccagaataaaaccggtgagttttgcgatcaacctcaatccagctacaaccaggcagcttcttgcctgtaacatcctccttcatgagcttccttactttcctaacctcttcccagaagccaccttcactgtataagtttgcaagcatcactacataattagcattacttggattcaaatccaacaagtttcttatagcatgctcggccagttctaggtgtctgtgtattctacaggcattgagtaatgacccccaaatgacttcgtctggttgaactttcatatcattgataaaattcatcgcatcctgaaaccgtcctgctcgacaaagaagatctacaacacaaccataatgctcaatctctggctcaattccatgctcatcacacatcagttcaaagtatctaagaccttcatcaacaaaccctccatgggtgcatgcattcaacagcccaacaaaagtaacctcatcaggttgaaccccttcattcctcatcgaattaaacaccgcaatggcactctcgctgcacccatgtagtgcaaggcaattgatcagagaattccatgtggtcagacccctatcagaaaacgcatcaaagatccattttgcctccatcaaattcccacatttaccatacatatcaatcaacccattcacaacggatgagccaaaaccaacacagctcctccacgcataaccatggatcacctttccaatcttcagcatccctaaatgtccgcacgcagacagcaaacaagatactgtggtgccatttggccggaacccctcatcaaccatcctcctgaaaatccccactgcctccacaaacaacccattctgtgtgcatccggcaatgatcgcattccaggcaggcacatccctctgaggcatccgttcgaacaacactatcgcatccccaaccttccctgcccttgcatacccggacaccagcgcggtccaggagaccacgttcctatcagtcaaaccatcgaacagcttccgcgcgtcgcccatcatcccgtacctcgagtacccatcgaggagcgaggtccttataaaatcgtgcccgtagaacccgtccttgcaggcgtggcaatggatcgacctgaccagctggaccccaatggcgcaggcggcgcggaggacgagcgggtagacgaactggttgggcgcgggtcggccgcggcggagcatgcggaggaagagcgcgagggagtccctggcgtgttcctgcgagtgggaggaggcggcggcgtaggcggagagcatggcggagtagaggaagacgttggggctgggcgtggcgtcgaagaggcggtgggcgtaggggaggcaggagaggcggagggaggcgaaccggaggaggtggaaggtggtggtctgcgcggcggcgcggccggtgacgacggcgtgggcatggagctgcttgaggtgcgcgagggtggcgcagcggtggagggcggcgacgaagtcgccgtgggaggagaacggtggcgccgggggcat
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| CDS seq | atgcccccggcgccaccgttctcctcccacggcgacttcgtcgccgccctccaccgctgcgccaccctcgcgcacctcaagcagctccatgcccacgccgtcgtcaccggccgcgccgccgcgcagaccaccaccttccacctcctccggttcgcctccctccgcctctcctgcctcccctacgcccaccgcctcttcgacgccacgcccagccccaacgtcttcctctactccgccatgctctccgcctacgccgccgcctcctcccactcgcaggaacacgccagggactccctcgcgctcttcctccgcatgctccgccgcggccgacccgcgcccaaccagttcgtctacccgctcgtcctccgcgccgcctgcgccattggggtccagctggtcaggtcgatccattgccacgcctgcaaggacgggttctacgggcacgattttataaggacctcgctcctcgatgggtactcgaggtacgggatgatgggcgacgcgcggaagctgttcgatggtttgactgataggaacgtggtctcctggaccgcgctggtgtccgggtatgcaagggcagggaaggttggggatgcgatagtgttgttcgaacggatgcctcagagggatgtgcctgcctggaatgcgatcattgccggatgcacacagaatgggttgtttgtggaggcagtggggattttcaggaggatggttgatgaggggttccggccaaatggcaccacagtatcttgtttgctgtctgcgtgcggacatttagggatgctgaagattggaaaggtgatccatggttatgcgtggaggagctgtgttggttttggctcatccgttgtgaatgggttgattgatatgtatggtaaatgtgggaatttgatggaggcaaaatggatctttgatgcgttttctgataggggtctgaccacatggaattctctgatcaattgccttgcactacatgggtgcagcgagagtgccattgcggtgtttaattcgatgaggaatgaaggggttcaacctgatgaggttacttttgttgggctgttgaatgcatgcacccatggagggtttgttgatgaaggtcttagatactttgaactgatgtgtgatgagcatggaattgagccagagattgagcattatggttgtgttgtagatcttctttgtcgagcaggacggtttcaggatgcgatgaattttatcaatgatatgaaagttcaaccagacgaagtcatttgggggtcattactcaatgcctgtagaatacacagacacctagaactggccgagcatgctataagaaacttgttggatttgaatccaagtaatgctaattatgtagtgatgcttgcaaacttatacagtgaaggtggcttctgggaagaggttaggaaagtaaggaagctcatgaaggaggatgttacaggcaagaagctgcctggttgtagctggattgaggttgatcgcaaaactcaccggttttattctggtgatgatggtcaccctgagtcagacgatatctatgacactcttgataagttagctaccacaatggaaatgcaggctacatttgcatag
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| Protein seq | MPPAPPFSSHGDFVAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYAHRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTHRFYSGDDGHPESDDIYDTLDKLATTMEMQATFA |
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| Function | Pentatricopeptide repeat-containing protein At1g33350 [UniProtKB/Swiss-Prot:Q9C501] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025210 | OsLima_02g0025210.01 | Chr02 | 26452248 | 26453840 | - | NAM | ||
| CDS seq | atgcccccggcgccaccgttctcctcccacggcgacttcgtcgccgccctccaccgctgcgccaccctcgcgcacctcaagcagctccatgcccacgccgtcgtcaccggccgcgccgccgcgcagaccaccaccttccacctcctccggttcgcctccctccgcctctcctgcctcccctacgcccaccgcctcttcgacgccacgcccagccccaacgtcttcctctactccgccatgctctccgcctacgccgccgcctcctcccactcgcaggaacacgccagggactccctcgcgctcttcctccgcatgctccgccgcggccgacccgcgcccaaccagttcgtctacccgctcgtcctccgcgccgcctgcgccattggggtccagctggtcaggtcgatccattgccacgcctgcaaggacgggttctacgggcacgattttataaggacctcgctcctcgatgggtactcgaggtacgggatgatgggcgacgcgcggaagctgttcgatggtttgactgataggaacgtggtctcctggaccgcgctggtgtccgggtatgcaagggcagggaaggttggggatgcgatagtgttgttcgaacggatgcctcagagggatgtgcctgcctggaatgcgatcattgccggatgcacacagaatgggttgtttgtggaggcagtggggattttcaggaggatggttgatgaggggttccggccaaatggcaccacagtatcttgtttgctgtctgcgtgcggacatttagggatgctgaagattggaaaggtgatccatggttatgcgtggaggagctgtgttggttttggctcatccgttgtgaatgggttgattgatatgtatggtaaatgtgggaatttgatggaggcaaaatggatctttgatgcgttttctgataggggtctgaccacatggaattctctgatcaattgccttgcactacatgggtgcagcgagagtgccattgcggtgtttaattcgatgaggaatgaaggggttcaacctgatgaggttacttttgttgggctgttgaatgcatgcacccatggagggtttgttgatgaaggtcttagatactttgaactgatgtgtgatgagcatggaattgagccagagattgagcattatggttgtgttgtagatcttctttgtcgagcaggacggtttcaggatgcgatgaattttatcaatgatatgaaagttcaaccagacgaagtcatttgggggtcattactcaatgcctgtagaatacacagacacctagaactggccgagcatgctataagaaacttgttggatttgaatccaagtaatgctaattatgtagtgatgcttgcaaacttatacagtgaaggtggcttctgggaagaggttaggaaagtaaggaagctcatgaaggaggatgttacaggcaagaagctgcctggttgtagctggattgaggttgatcgcaaaactcaccggttttattctggtgatgatggtcaccctgagtcagacgatatctatgacactcttgataagttagctaccacaatggaaatgcaggctacatttgcatag
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| Protein seq | MPPAPPFSSHGDFVAALHRCATLAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLRLSCLPYAHRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTHRFYSGDDGHPESDDIYDTLDKLATTMEMQATFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0116100 | SBH | 1.611243 | 0.937196 | 0.676058 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40750 | RBH | 0.465706 | 0.400444 | 0.179761 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0116100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025430 | RBH | 0.163442 | 1.647287 | 0.747466 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025580 | RBH | 0.131380 | 0.0 | 0.610116 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025430 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025020 | RBH | 0.089534 | 0.037151 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025100 | RBH | 1.616758 | 0.0 | 1.064743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0402100 | RBH | 0.773073 | 2.230964 | 1.0223245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024990 | RBH | 0.060738 | 0.100356 | 0.309210 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0368800 | SBH | 0.757119 | 1.2539675 | 2.702005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019530 | RBH | 0.168235 | 0.155888 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025030 | RBH | 0.348812 | 1.865051 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025340 | RBH | 1.478798 | 3.963737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025240 | RBH | 0.081226 | 0.149364 | 0.216770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024760 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025410 | RBH | 0.024442 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025250 | RBH | 0.725092 | 0.0 | 0.737458 |
