Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019190 | OGI:04077040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:26917148-26923378 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaaaaaaaaccttggaagaaaggcacagcagtacagcagccagcagcctcagctccctcgccaagcagagagcgcgaggaagaagaaggaagaaggcgcggaccgggatccccccgtcgggccccacatggccgcgccttgagccccgccccgtcccgcccactccggacccagggcaccgagatgccgccgcggcgagcggcgctgctcctcctcgctctcgccgtgtatggtatgttccttcaagattgtgtGtttctttTCttttttttttctttctacccgctgttcttcttgcccggccgggcgggcgatttcttcggggtttgaggttgcaatgcggagtggaattgttgtctggtttgtttcgttgcaatgggatcgccggcctggaagaagagcggtcatggctggctggcttgcgtggcacgttccccaggggttgtggaaagatggtttcgcctttgcttcatggagctgttcctcctgtgattcgtccgagcgcatcggcatctgaatccagtaggcgtggacatggcgtagattcccgtcaattttctccttttgattctcctctctttccctttcttgaatcaacccatgccgagtctgagaaagtttggaatttttatgcaaatctgttgttaaaaatttgctgcattggcgctgcccgcagcgattttcggtgggcttttactacgcttgatttgccggcttaaacccaccgcgtttcagtactgcaccagctgtagtggttggtgtgcatttgcctttctgttgtattgaaccgaaaaagttaacaagcttttggtgcaatgctcgattagtggtcaaggtttttggcgaggttcctgctgttctgttctcgtcttgcaatcttgcagacacatagttttcgttgcactctgcattgctcatctatagtaattttcttgtttttaatcaaactgtaattttgtagtaattcgcactcattcgtcctgcattatctgtaatatttggctgtagtttcttcaaaacaaaggccggaatgaattccattatctaaaaaaaatatatacagtggcgtgcaaaaccgtgtgagttactgcattagtattccagtttccactccatgaaacatatgttcattgtagttatgctgaagtaatagttaagagtatacagatgttatgtatcatatgaacagcatttttttttgggtcaatatccttgcagtgccactgggaacggcaagctcaacaactatcgcgtcgtacttacttgggttatggagtagagcacatcggcattctcttcctgcccctgctccagctccagctccagctccagcccctgaaactcaccgtaagtagaaatactgttgaaatttgtacacttaaatagtaattcaggtgtaacatgttctgcaaacttaaatatttatttcatcagtattcttacattcaatgattttcttgttgtcttgaaccgtcttgtaattttgtcgatcattttggttctcaggacctggtattagacacccagtgcctaggcatcacaggaaaaggcctcatgttgccccaccactaccaccaccatcatcatcagaaagacaaggttctacttttctctactgaccaattgagattgcaaatcttagtattgttagcactgaaggacacaacaataatagacgcgtttgtgcctgcaatgtaacagattgcagtgggatttcctgtactgctccactcacatctactccaatcggctccccctgtggctgcgtatatcccatgcaaattcaacttgatcttgtagtagcaccatatcagttgtttccaagaattgatgagttagaaattgagattgcagcaggaacatttctgaaacagagtcaagttcggataatgggtgctgggagtagtcttcaagatcctgaaaaaactactgtcaccgttgatttggtgccactaggtcagaagtttgataggacttcagccttactgactagcaacagatttttgcaaaagaaggtgccaataaactcgtccatatttggtgattataacgtaatatatgttcattatcctggtgagtgacatatttttttgttgacatcaacttcaatagtataattcccagtattgctgtatgtaatcatagaaattttgcaggcctgccttctttggtccctagtgttccaggatccttgggcccaataagcagtagccaatacccctttagtgcaaatgtacacaatagaagacatcagaagattaactctaaaagtgttgccataattgcattatcagctgttgtgcttgtattaatgagctttggcatttgcatcatatggaaatataaaggatttgaaaagtctcgtggcactggtcgtgtttcgaattcgtcagccacaagaaaaacaggtaacttttggcagtcctggtacatatgctaccgttataatatgtcctgttatatccattttgcatttagacaccctctgttctcgaataactaatactgttgaactgttgactattggcatctcactttgatcacaaattacttttaaactatgagattacgatgaatgaaatttgtatgtttatacttgtgatgccacacactttgacaatataacatattttcaagtatttattttattttattttattttttgctaaaggaagaagtggtcaaagtttgaaaataaatagttccagtatcagttattcgagaatgcagataatgttaatttgcaagttcaattttggccctttttttgtgtgattcaacatgaatagtaaaaccttactttttgactgtgtaattcccttgctgtttgtataacatcttgtttctgtttcaggtatgaggtcatcattctccagtatgaccagctcgacggcatcttttgtttcaacaattgcaacatgcccacctacagttaagacattctctatttctgagcttgaaaaggccacagaaaacttcagcttcaacaaaataataggtgaaggagggtatggccgtgtttatcgaggtacaattgatgatgaagttgatgttgcagtcaaattgcttacaagaaaacatcaaaacagagatcgtgagtttattgccgaggttgagatgctaagtcgtttgcatcatcgtaatcttgtcaagctgatcggtatatgcattgaacggagcacaaggtgcttggtgtttgagcttgttccaaacggaagtgtggagtctcatctgcacggtatgtacacttatttagtctacaccattggcatataagaaTCtttggtacattttcagcactttcctatgcttcattatacattgttgtgatctgcatatttacttctgttttgatgtttcaggttctgataaaatatacggcccacttgattttgatactagaatgaaaatagcccttggtgcagcaaggggtctggcctacctacatgaggatgccaatccccatgttatacaccgtgatttcaaggccagcaacgttcttttggaaaatgatttcactcccaaggttgcggatttcgggttggcaaaggaagcctcagaaggaatggaccatatttctactcaggtcatggggacttttgggtaagtcgcattcttaccatattcacctgtggctattatatcaccccaaaacacactaaatttgtaaggagaaaaagaagaagataatttagtcatacactagtacaccacagtagattatcaatcttgtaggatcgaatcacaagaactaagccaaccagagggggggcgggggtgaatggttggtataccccaaaacccaaacttttagcggaaataaaagttaccctcaaattcgatgtagatcggactgaacgaggttgatccgccggtctgaccgcgcttgtgccgctggtctgaccagtgttgatcgcccggttcaaaagcctgaagatcgcctgccgcgcctgaagtcgtagcaggtctgactgcctctcctccgtcggtctgaccgtcgctatgtcgtcggttagaccgccgaacctgatgaaacacaaatcgaagaactcttaaagtagatgacaactttattgcttccctctgtgtttacaaagtgcaccaacaacactccttacaaaaatttcgactaaactcgaaaccctaactaaactatcaactcaattgctctcaacagcgataccgggaaacctcacactccctctctatttatacccaaggtaggcagcctaaagccacgaaccaaattcatactagaagtcctaatcaccttaggaaaccctctagtacaagaaacaaactttacataaccaatcataccaaatttggactcctttcaaattcgactccgcatcccatacgcacacaatacctccatcgtatgccatatggaatctttaccaaccacgtgcattgaactctagccttagtatctcgcatgatatctgaccaccacggacatcgccttaccaccaagtcgactcccggtccaacttgactctctcgaggcatcgagtcacctacacatgaaacaaacaaagaaaccatattccgagaccaagctatccccaacttgactcattagtagcaaacaacagtattacatacgcatagtatccttctagaagccataaccatgaaacaatcacggatatccaaacaaacaaactaaaaccgacacagtgtcggccggccagactgcgggctagccggtctgactgctcaatcatcaccggtccgaccggcacacactgcccggtctgaccggacccaaaacacagcagatcacctgtgaaatccaatcatcttcaaaaccacttcgtaaataaatttcaaatatcaaaaccaataaacgtcaatgccaattgtttatcacagaataacaatcaaaaacacatttgattttacaaatcttgattgtagtgataaattaaatatttcaataaataaattaataattaataaagctgtgatctaaacaatacaatagacgaaagctttctgagaaatcgtattagcaaataattaacggcgatgatattgtgaataataagctgaaaagaaagtttaacttttgatcgatttctttttgtcatggtcttcaggtacgttgccccggagtatgcgatgaccgggcatctcctggtgaaaagcgacgtgtacagctacggtgtcgtgctgctggagctcctctcggggaggaagccggtggacatgacgcagccgccggggtcggagaacctcgtcacctgggcgcgccccctcctcaccgaccgggacggcctccagcagctggtcgacccgtcgatgccggcggcgagctacggcttcgagaagctggccaaggcggcggccatcgcgtccatgtgcgtgcacgtcgaggcgtcgcaccggccgttcatgggcgaggtcgtgcaggccctgaagctcatctacaacggcaacaacgacgacacctgcaccagcggctcgttcggcggcggcggcggcgaggagtacgaggacgaggaggcgtcgtcgccgtggaacaaccgctcgtggagccacgacttcgccgcgacgccgccgccggcgtcgcgcaggctggcgttcccgcgggctccggcccgcccgacgacgatggactacagctcggacccggccgacggggcggcggggacgtcgtcggcgtcggcgcggcggcagcggtcgacgtcgagcctggtgctggacaagatcgagtcgctggcggcgtacgactggtccggcccgctgagggccagcagggggaggaacttctacaggctgaggggaagcatgagcgagcatggcggccatccttccgaagattgctccatggagggctactggatgtagtagctaaagctgagtgatgatgatgatgatcagatgttgtctgcagaattgcagattgccttccatttcttgtcatgttcttcagttaactgtatagttttctgctcatttgatgatgataggattttgatatgattgatgccatgctctgaacaacaatcaccacaccacccctggtctggccctcattttttccatgtagtggatgaacgcactaatcatcatatcattatggcattttgcaacattcattgcactagaatttagcattagtctaggcagtatcaaacaagacattagagcatgttgccatgtacatgaacaaatggatagcacaacaaaaaaaagtgccttaactactcaactagctagt
More
|
||||||||||
| CDS seq | atgccgccgcggcgagcggcgctgctcctcctcgctctcgccgtgtatgtgccactgggaacggcaagctcaacaactatcgcgtcgtacttacttgggttatggagtagagcacatcggcattctcttcctgcccctgctccagctccagctccagctccagcccctgaaactcaccgacctggtattagacacccagtgcctaggcatcacaggaaaaggcctcatgttgccccaccactaccaccaccatcatcatcagaaagacaagtagcaccatatcagttgtttccaagaattgatgagttagaaattgagattgcagcaggaacatttctgaaacagagtcaagttcggataatgggtgctgggagtagtcttcaagatcctgaaaaaactactgtcaccgttgatttggtgccactaggtcagaagtttgataggacttcagccttactgactagcaacagatttttgcaaaagaaggtgccaataaactcgtccatatttggtgattataacgtaatatatgttcattatcctggcctgccttctttggtccctagtgttccaggatccttgggcccaataagcagtagccaatacccctttagtgcaaatgtacacaatagaagacatcagaagattaactctaaaagtgttgccataattgcattatcagctgttgtgcttgtattaatgagctttggcatttgcatcatatggaaatataaaggatttgaaaagtctcgtggcactggtcgtgtttcgaattcgtcagccacaagaaaaacaggtatgaggtcatcattctccagtatgaccagctcgacggcatcttttgtttcaacaattgcaacatgcccacctacagttaagacattctctatttctgagcttgaaaaggccacagaaaacttcagcttcaacaaaataataggtgaaggagggtatggccgtgtttatcgaggtacaattgatgatgaagttgatgttgcagtcaaattgcttacaagaaaacatcaaaacagagatcgtgagtttattgccgaggttgagatgctaagtcgtttgcatcatcgtaatcttgtcaagctgatcggtatatgcattgaacggagcacaaggtgcttggtgtttgagcttgttccaaacggaagtgtggagtctcatctgcacggttctgataaaatatacggcccacttgattttgatactagaatgaaaatagcccttggtgcagcaaggggtctggcctacctacatgaggatgccaatccccatgttatacaccgtgatttcaaggccagcaacgttcttttggaaaatgatttcactcccaaggttgcggatttcgggttggcaaaggaagcctcagaaggaatggaccatatttctactcaggtcatggggacttttgggtacgttgccccggagtatgcgatgaccgggcatctcctggtgaaaagcgacgtgtacagctacggtgtcgtgctgctggagctcctctcggggaggaagccggtggacatgacgcagccgccggggtcggagaacctcgtcacctgggcgcgccccctcctcaccgaccgggacggcctccagcagctggtcgacccgtcgatgccggcggcgagctacggcttcgagaagctggccaaggcggcggccatcgcgtccatgtgcgtgcacgtcgaggcgtcgcaccggccgttcatgggcgaggtcgtgcaggccctgaagctcatctacaacggcaacaacgacgacacctgcaccagcggctcgttcggcggcggcggcggcgaggagtacgaggacgaggaggcgtcgtcgccgtggaacaaccgctcgtggagccacgacttcgccgcgacgccgccgccggcgtcgcgcaggctggcgttcccgcgggctccggcccgcccgacgacgatggactacagctcggacccggccgacggggcggcggggacgtcgtcggcgtcggcgcggcggcagcggtcgacgtcgagcctggtgctggacaagatcgagtcgctggcggcgtacgactggtccggcccgctgagggccagcagggggaggaacttctacaggctgaggggaagcatgagcgagcatggcggccatccttccgaagattgctccatggagggctactggatgtag
More
|
||||||||||
| Protein seq | MPPRRAALLLLALAVYVPLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPPLPPPSSSERQVAPYQLFPRIDELEIEIAAGTFLKQSQVRIMGAGSSLQDPEKTTVTVDLVPLGQKFDRTSALLTSNRFLQKKVPINSSIFGDYNVIYVHYPGLPSLVPSVPGSLGPISSSQYPFSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWKYKGFEKSRGTGRVSNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKTFSISELEKATENFSFNKIIGEGGYGRVYRGTIDDEVDVAVKLLTRKHQNRDREFIAEVEMLSRLHHRNLVKLIGICIERSTRCLVFELVPNGSVESHLHGSDKIYGPLDFDTRMKIALGAARGLAYLHEDANPHVIHRDFKASNVLLENDFTPKVADFGLAKEASEGMDHISTQVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMTQPPGSENLVTWARPLLTDRDGLQQLVDPSMPAASYGFEKLAKAAAIASMCVHVEASHRPFMGEVVQALKLIYNGNNDDTCTSGSFGGGGGEEYEDEEASSPWNNRSWSHDFAATPPPASRRLAFPRAPARPTTMDYSSDPADGAAGTSSASARRQRSTSSLVLDKIESLAAYDWSGPLRASRGRNFYRLRGSMSEHGGHPSEDCSMEGYWM |
||||||||||
| Function | Receptor-like serine/threonine-protein kinase ALE2 [UniProtKB/Swiss-Prot:Q8RWW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019190 | OsLima_04g0019190.01 | Chr04 | 26917148 | 26923378 | + | NAM | ||
| CDS seq | atgccgccgcggcgagcggcgctgctcctcctcgctctcgccgtgtatgtgccactgggaacggcaagctcaacaactatcgcgtcgtacttacttgggttatggagtagagcacatcggcattctcttcctgcccctgctccagctccagctccagctccagcccctgaaactcaccgacctggtattagacacccagtgcctaggcatcacaggaaaaggcctcatgttgccccaccactaccaccaccatcatcatcagaaagacaagtagcaccatatcagttgtttccaagaattgatgagttagaaattgagattgcagcaggaacatttctgaaacagagtcaagttcggataatgggtgctgggagtagtcttcaagatcctgaaaaaactactgtcaccgttgatttggtgccactaggtcagaagtttgataggacttcagccttactgactagcaacagatttttgcaaaagaaggtgccaataaactcgtccatatttggtgattataacgtaatatatgttcattatcctggcctgccttctttggtccctagtgttccaggatccttgggcccaataagcagtagccaatacccctttagtgcaaatgtacacaatagaagacatcagaagattaactctaaaagtgttgccataattgcattatcagctgttgtgcttgtattaatgagctttggcatttgcatcatatggaaatataaaggatttgaaaagtctcgtggcactggtcgtgtttcgaattcgtcagccacaagaaaaacaggtatgaggtcatcattctccagtatgaccagctcgacggcatcttttgtttcaacaattgcaacatgcccacctacagttaagacattctctatttctgagcttgaaaaggccacagaaaacttcagcttcaacaaaataataggtgaaggagggtatggccgtgtttatcgaggtacaattgatgatgaagttgatgttgcagtcaaattgcttacaagaaaacatcaaaacagagatcgtgagtttattgccgaggttgagatgctaagtcgtttgcatcatcgtaatcttgtcaagctgatcggtatatgcattgaacggagcacaaggtgcttggtgtttgagcttgttccaaacggaagtgtggagtctcatctgcacggttctgataaaatatacggcccacttgattttgatactagaatgaaaatagcccttggtgcagcaaggggtctggcctacctacatgaggatgccaatccccatgttatacaccgtgatttcaaggccagcaacgttcttttggaaaatgatttcactcccaaggttgcggatttcgggttggcaaaggaagcctcagaaggaatggaccatatttctactcaggtcatggggacttttgggtacgttgccccggagtatgcgatgaccgggcatctcctggtgaaaagcgacgtgtacagctacggtgtcgtgctgctggagctcctctcggggaggaagccggtggacatgacgcagccgccggggtcggagaacctcgtcacctgggcgcgccccctcctcaccgaccgggacggcctccagcagctggtcgacccgtcgatgccggcggcgagctacggcttcgagaagctggccaaggcggcggccatcgcgtccatgtgcgtgcacgtcgaggcgtcgcaccggccgttcatgggcgaggtcgtgcaggccctgaagctcatctacaacggcaacaacgacgacacctgcaccagcggctcgttcggcggcggcggcggcgaggagtacgaggacgaggaggcgtcgtcgccgtggaacaaccgctcgtggagccacgacttcgccgcgacgccgccgccggcgtcgcgcaggctggcgttcccgcgggctccggcccgcccgacgacgatggactacagctcggacccggccgacggggcggcggggacgtcgtcggcgtcggcgcggcggcagcggtcgacgtcgagcctggtgctggacaagatcgagtcgctggcggcgtacgactggtccggcccgctgagggccagcagggggaggaacttctacaggctgaggggaagcatgagcgagcatggcggccatccttccgaagattgctccatggagggctactggatgtag
More
|
|||||||
| Protein seq | MPPRRAALLLLALAVYVPLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPPLPPPSSSERQVAPYQLFPRIDELEIEIAAGTFLKQSQVRIMGAGSSLQDPEKTTVTVDLVPLGQKFDRTSALLTSNRFLQKKVPINSSIFGDYNVIYVHYPGLPSLVPSVPGSLGPISSSQYPFSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWKYKGFEKSRGTGRVSNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKTFSISELEKATENFSFNKIIGEGGYGRVYRGTIDDEVDVAVKLLTRKHQNRDREFIAEVEMLSRLHHRNLVKLIGICIERSTRCLVFELVPNGSVESHLHGSDKIYGPLDFDTRMKIALGAARGLAYLHEDANPHVIHRDFKASNVLLENDFTPKVADFGLAKEASEGMDHISTQVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMTQPPGSENLVTWARPLLTDRDGLQQLVDPSMPAASYGFEKLAKAAAIASMCVHVEASHRPFMGEVVQALKLIYNGNNDDTCTSGSFGGGGGEEYEDEEASSPWNNRSWSHDFAATPPPASRRLAFPRAPARPTTMDYSSDPADGAAGTSSASARRQRSTSSLVLDKIESLAAYDWSGPLRASRGRNFYRLRGSMSEHGGHPSEDCSMEGYWM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.030346 | 0.027204 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0509000 | RBH | 0.000000 | 0.097427 | 1.478315 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43020 | RBH | 0.000000 | 0.069226 | 0.358467 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0509000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019490 | RBH | 0.0 | 1.443421 | 3.693775 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020270 | RBH | 0.0 | 0.000000 | 0.290615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019990 | RBH | 0.0 | 0.665369 | 5.352133 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019700 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019910 | RBH | 0.0 | 1.221904 | 4.398739 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0399300 | RBH | 1.8208075 | 1.206045 | 2.6640755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018710 | RBH | 0.0 | 0.000000 | 0.325444 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0399400 | RBH | 2.4982725 | 0.416808 | 12.121208 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025380 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019040 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019170 | RBH | 0.0 | 2.323120 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019540 | RBH | 0.0 | 0.0 | 0.124813 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019710 | RBH | 0.0 | 0.507938 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018990 | RBH | 0.0 | 0.000000 | 2.506763 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018930 | RBH | 0.0 | 0.0 | 0.607755 |
