Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0018940 | OGI:04011900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:26750628-26753009 | ||||||||
| Gene Symbol | SRK, SDRLK-29 | ||||||||||
| DNA seq | atggcacttctcttcgtcccatttctcttctccctactgatcaccaccttcccgcccgctgcaacggacaccgtcaccgcaggccggccgctggctggcggcgacaagctcgtctccggcaacggtaagttcgcactgggatttttccaaatggccggcggcaacggcagcagtagcactgccccgaagtggtacctgggtgtatggttcaacacggtctcgaagttcaccccggcatgggtggccaaccgagagaaccctctcgccgacggcggcgcctcgtggcagctcgccatctccggcgacggcaacctcgtcatctcgaaccgcgccaacaacaactccatgacagctgcagcctggtccagccaggccaacaccacgacgagcaacaacaccgtcgccgttctcctgaacagcggcaacctcgtcctctccgacgcctcgaattcctccatcatcttctgggagagcttcagccacatgacggacaccttcctccccggcgcgaagatggggtggaacaaggcgacgggtttcacccacggcctcgtctccagcaagaactccggcgacctctcacccggcgtctactccgccacgccgtcctccgacttcgccaacccgggcctgttcctcgcgtggaactcctccgtggtgtactggtcgacggggccatggaacggggactacttcagcaacacgccggagctgacggctcgggctctcttcaccttcgacttcgtcagcaacgaccacgaggagtacttcacgtacaggctgaggaacgacacgatggtcacgaggtacgtgctcgctgcctccgggcaggcgaagaacatgatctggtccagcgtctcggaggattgggtgaccttctacgcgaagccaggagctcagtgtgacgtgtacgctgtctgtggagctttcgctctctgcagagaggacatgctcccgttctgcaactgcatggagggcttctccatcaggtcaccacaggactgggagctaggagaccagaccggtggatgtgttaggaacgttcctctgaattgtggtgtgacagataggttctatgccatgagtgatgttagattccctgctaatgccaagaacatggaagctgggactgccgatggatgcaaacaggcttgtctgaatgattgttcttgcactgcatattcatacaacggcagttgcaatgtttggagtgatggattgtttaatgttgcacggcagtataactataaccagagtagcagtggaggaattctttaccttcgccttgcagctgaggatgatgttagtgagagctcaaagcacacaagaggattgatcattggagtggttgctgttgcaagcgttctcattctgtccttgtttacaattgttatcatgtttgttaggagaaataaaaggaactgttcatcagtcggtagaattatatgtggaacagtagcttttaggtacaaggatctccagcatgcaacaaaaaacttctcagaaagattagggggtggcagctttggttctgtgttcaagggtgttttgactgactccactgtaatagctgtcaaaagacttgatggtgctcgtcaaggagagaaggaattcagagcagaggtgcgttcaataggaataatccaacatattaacctggtcaggttaattggtttttgttgcgaaggtagcaataggttgttggtctatgaatacatgccaaatggttcacttgattccaatctttttgggagtaaagttgcatctctggattggagtactcggtataaaatagcgcttggtgttgccagaggattggcctacatgcatgggaattgtctggactgcatcatacattgtgacatcaagccacagaatattcttttggatgcatcatttgttcccaagattgcagattttgggatgtcaaagctcatggggagagattttagccaagttctgacaacggtacgaggaactatcggatatcttgcgcctgaatggattagtggaatggccatctcatcaaaagtggatgtttacagctatggaatggtgctgttggaaatcgtatttggaagaagaaattttagaggagagtgcaccagtaatgctacctatttcccggttcaggttgttggtaaactccttcaggggaatgtgcaatgcctattggaccaaaacattcagagtgacatcaattcagaagaggttgaaagagcttgccgagttgcttgctggtgtattcaggatgatgaattgaacagaccgaccatggcacaggtagtccatatacttgaaggcgtcttagaagtcgacatgcctcccatgccaaagttgcttcaggcaatttctggcaacatggattcgactaagacatag
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| CDS seq | atggcacttctcttcgtcccatttctcttctccctactgatcaccaccttcccgcccgctgcaacggacaccgtcaccgcaggccggccgctggctggcggcgacaagctcgtctccggcaacggtaagttcgcactgggatttttccaaatggccggcggcaacggcagcagtagcactgccccgaagtggtacctgggtgtatggttcaacacggtctcgaagttcaccccggcatgggtggccaaccgagagaaccctctcgccgacggcggcgcctcgtggcagctcgccatctccggcgacggcaacctcgtcatctcgaaccgcgccaacaacaactccatgacagctgcagcctggtccagccaggccaacaccacgacgagcaacaacaccgtcgccgttctcctgaacagcggcaacctcgtcctctccgacgcctcgaattcctccatcatcttctgggagagcttcagccacatgacggacaccttcctccccggcgcgaagatggggtggaacaaggcgacgggtttcacccacggcctcgtctccagcaagaactccggcgacctctcacccggcgtctactccgccacgccgtcctccgacttcgccaacccgggcctgttcctcgcgtggaactcctccgtggtgtactggtcgacggggccatggaacggggactacttcagcaacacgccggagctgacggctcgggctctcttcaccttcgacttcgtcagcaacgaccacgaggagtacttcacgtacaggctgaggaacgacacgatggtcacgaggtacgtgctcgctgcctccgggcaggcgaagaacatgatctggtccagcgtctcggaggattgggtgaccttctacgcgaagccaggagctcagtgtgacgtgtacgctgtctgtggagctttcgctctctgcagagaggacatgctcccgttctgcaactgcatggagggcttctccatcaggtcaccacaggactgggagctaggagaccagaccggtggatgtgttaggaacgttcctctgaattgtggtgtgacagataggttctatgccatgagtgatgttagattccctgctaatgccaagaacatggaagctgggactgccgatggatgcaaacaggcttgtctgaatgattgttcttgcactgcatattcatacaacggcagttgcaatgtttggagtgatggattgtttaatgttgcacggcagtataactataaccagagtagcagtggaggaattctttaccttcgccttgcagctgaggatgatgttagtgagagctcaaagcacacaagaggattgatcattggagtggttgctgttgcaagcgttctcattctgtccttgtttacaattgttatcatgtttgttaggagaaataaaaggaactgttcatcagtcggtagaattatatgtggaacagtagcttttaggtacaaggatctccagcatgcaacaaaaaacttctcagaaagattagggggtggcagctttggttctgtgttcaagggtgttttgactgactccactgtaatagctgtcaaaagacttgatggtgctcgtcaaggagagaaggaattcagagcagaggtgcgttcaataggaataatccaacatattaacctggtcaggttaattggtttttgttgcgaaggtagcaataggttgttggtctatgaatacatgccaaatggttcacttgattccaatctttttgggagtaaagttgcatctctggattggagtactcggtataaaatagcgcttggtgttgccagaggattggcctacatgcatgggaattgtctggactgcatcatacattgtgacatcaagccacagaatattcttttggatgcatcatttgttcccaagattgcagattttgggatgtcaaagctcatggggagagattttagccaagttctgacaacggtacgaggaactatcggatatcttgcgcctgaatggattagtggaatggccatctcatcaaaagtggatgtttacagctatggaatggtgctgttggaaatcgtatttggaagaagaaattttagaggagagtgcaccagtaatgctacctatttcccggttcaggttgttggtaaactccttcaggggaatgtgcaatgcctattggaccaaaacattcagagtgacatcaattcagaagaggttgaaagagcttgccgagttgcttgctggtgtattcaggatgatgaattgaacagaccgaccatggcacaggtagtccatatacttgaaggcgtcttagaagtcgacatgcctcccatgccaaagttgcttcaggcaatttctggcaacatggattcgactaagacatag
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| Protein seq | MALLFVPFLFSLLITTFPPAATDTVTAGRPLAGGDKLVSGNGKFALGFFQMAGGNGSSSTAPKWYLGVWFNTVSKFTPAWVANRENPLADGGASWQLAISGDGNLVISNRANNNSMTAAAWSSQANTTTSNNTVAVLLNSGNLVLSDASNSSIIFWESFSHMTDTFLPGAKMGWNKATGFTHGLVSSKNSGDLSPGVYSATPSSDFANPGLFLAWNSSVVYWSTGPWNGDYFSNTPELTARALFTFDFVSNDHEEYFTYRLRNDTMVTRYVLAASGQAKNMIWSSVSEDWVTFYAKPGAQCDVYAVCGAFALCREDMLPFCNCMEGFSIRSPQDWELGDQTGGCVRNVPLNCGVTDRFYAMSDVRFPANAKNMEAGTADGCKQACLNDCSCTAYSYNGSCNVWSDGLFNVARQYNYNQSSSGGILYLRLAAEDDVSESSKHTRGLIIGVVAVASVLILSLFTIVIMFVRRNKRNCSSVGRIICGTVAFRYKDLQHATKNFSERLGGGSFGSVFKGVLTDSTVIAVKRLDGARQGEKEFRAEVRSIGIIQHINLVRLIGFCCEGSNRLLVYEYMPNGSLDSNLFGSKVASLDWSTRYKIALGVARGLAYMHGNCLDCIIHCDIKPQNILLDASFVPKIADFGMSKLMGRDFSQVLTTVRGTIGYLAPEWISGMAISSKVDVYSYGMVLLEIVFGRRNFRGECTSNATYFPVQVVGKLLQGNVQCLLDQNIQSDINSEEVERACRVACWCIQDDELNRPTMAQVVHILEGVLEVDMPPMPKLLQAISGNMDSTKT |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0018940 | OsLima_04g0018940.01 | Chr04 | 26750628 | 26753009 | + | NAM | ||
| CDS seq | atggcacttctcttcgtcccatttctcttctccctactgatcaccaccttcccgcccgctgcaacggacaccgtcaccgcaggccggccgctggctggcggcgacaagctcgtctccggcaacggtaagttcgcactgggatttttccaaatggccggcggcaacggcagcagtagcactgccccgaagtggtacctgggtgtatggttcaacacggtctcgaagttcaccccggcatgggtggccaaccgagagaaccctctcgccgacggcggcgcctcgtggcagctcgccatctccggcgacggcaacctcgtcatctcgaaccgcgccaacaacaactccatgacagctgcagcctggtccagccaggccaacaccacgacgagcaacaacaccgtcgccgttctcctgaacagcggcaacctcgtcctctccgacgcctcgaattcctccatcatcttctgggagagcttcagccacatgacggacaccttcctccccggcgcgaagatggggtggaacaaggcgacgggtttcacccacggcctcgtctccagcaagaactccggcgacctctcacccggcgtctactccgccacgccgtcctccgacttcgccaacccgggcctgttcctcgcgtggaactcctccgtggtgtactggtcgacggggccatggaacggggactacttcagcaacacgccggagctgacggctcgggctctcttcaccttcgacttcgtcagcaacgaccacgaggagtacttcacgtacaggctgaggaacgacacgatggtcacgaggtacgtgctcgctgcctccgggcaggcgaagaacatgatctggtccagcgtctcggaggattgggtgaccttctacgcgaagccaggagctcagtgtgacgtgtacgctgtctgtggagctttcgctctctgcagagaggacatgctcccgttctgcaactgcatggagggcttctccatcaggtcaccacaggactgggagctaggagaccagaccggtggatgtgttaggaacgttcctctgaattgtggtgtgacagataggttctatgccatgagtgatgttagattccctgctaatgccaagaacatggaagctgggactgccgatggatgcaaacaggcttgtctgaatgattgttcttgcactgcatattcatacaacggcagttgcaatgtttggagtgatggattgtttaatgttgcacggcagtataactataaccagagtagcagtggaggaattctttaccttcgccttgcagctgaggatgatgttagtgagagctcaaagcacacaagaggattgatcattggagtggttgctgttgcaagcgttctcattctgtccttgtttacaattgttatcatgtttgttaggagaaataaaaggaactgttcatcagtcggtagaattatatgtggaacagtagcttttaggtacaaggatctccagcatgcaacaaaaaacttctcagaaagattagggggtggcagctttggttctgtgttcaagggtgttttgactgactccactgtaatagctgtcaaaagacttgatggtgctcgtcaaggagagaaggaattcagagcagaggtgcgttcaataggaataatccaacatattaacctggtcaggttaattggtttttgttgcgaaggtagcaataggttgttggtctatgaatacatgccaaatggttcacttgattccaatctttttgggagtaaagttgcatctctggattggagtactcggtataaaatagcgcttggtgttgccagaggattggcctacatgcatgggaattgtctggactgcatcatacattgtgacatcaagccacagaatattcttttggatgcatcatttgttcccaagattgcagattttgggatgtcaaagctcatggggagagattttagccaagttctgacaacggtacgaggaactatcggatatcttgcgcctgaatggattagtggaatggccatctcatcaaaagtggatgtttacagctatggaatggtgctgttggaaatcgtatttggaagaagaaattttagaggagagtgcaccagtaatgctacctatttcccggttcaggttgttggtaaactccttcaggggaatgtgcaatgcctattggaccaaaacattcagagtgacatcaattcagaagaggttgaaagagcttgccgagttgcttgctggtgtattcaggatgatgaattgaacagaccgaccatggcacaggtagtccatatacttgaaggcgtcttagaagtcgacatgcctcccatgccaaagttgcttcaggcaatttctggcaacatggattcgactaagacatag
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| Protein seq | MALLFVPFLFSLLITTFPPAATDTVTAGRPLAGGDKLVSGNGKFALGFFQMAGGNGSSSTAPKWYLGVWFNTVSKFTPAWVANRENPLADGGASWQLAISGDGNLVISNRANNNSMTAAAWSSQANTTTSNNTVAVLLNSGNLVLSDASNSSIIFWESFSHMTDTFLPGAKMGWNKATGFTHGLVSSKNSGDLSPGVYSATPSSDFANPGLFLAWNSSVVYWSTGPWNGDYFSNTPELTARALFTFDFVSNDHEEYFTYRLRNDTMVTRYVLAASGQAKNMIWSSVSEDWVTFYAKPGAQCDVYAVCGAFALCREDMLPFCNCMEGFSIRSPQDWELGDQTGGCVRNVPLNCGVTDRFYAMSDVRFPANAKNMEAGTADGCKQACLNDCSCTAYSYNGSCNVWSDGLFNVARQYNYNQSSSGGILYLRLAAEDDVSESSKHTRGLIIGVVAVASVLILSLFTIVIMFVRRNKRNCSSVGRIICGTVAFRYKDLQHATKNFSERLGGGSFGSVFKGVLTDSTVIAVKRLDGARQGEKEFRAEVRSIGIIQHINLVRLIGFCCEGSNRLLVYEYMPNGSLDSNLFGSKVASLDWSTRYKIALGVARGLAYMHGNCLDCIIHCDIKPQNILLDASFVPKIADFGMSKLMGRDFSQVLTTVRGTIGYLAPEWISGMAISSKVDVYSYGMVLLEIVFGRRNFRGECTSNATYFPVQVVGKLLQGNVQCLLDQNIQSDINSEEVERACRVACWCIQDDELNRPTMAQVVHILEGVLEVDMPPMPKLLQAISGNMDSTKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.025506 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0506700 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42740 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0506700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019230 | RBH | 0.0 | 6.588018 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020010 | RBH | 0.0 | 0.451471 | 0.133938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019730 | RBH | 0.0 | 2.807889 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019450 | RBH | 0.0 | 0.061909 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019660 | RBH | 0.0 | 1.449660 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0396600 | RBH | 0 | 1.443681 | 0.005577 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018470 | RBH | 0.0 | 0.516848 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0396800 | RBH | 0.007208 | 1.1167525 | 0.0050865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013120 | SBH | 0.073935 | 0.018073 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018790 | RBH | 0.0 | 1.268276 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019290 | RBH | 0.0 | 0.551217 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018740 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | RBH | 0.428041 | 1.303368 | 1.550173 |
