Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0017670 | OGI:04074240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25819495-25821644 | ||||||||
| Gene Symbol | OsOxi1 | ||||||||||
| DNA seq | attgatggcgcaagggcacttcaaagcatttactactttgagagaatgttgcagaaaaatgtacaaaaccgtgaccatttctattactcccactgaaaggaagtaacaggtattaacatcaatggctacccaaagcgaaatggaacacatggatggacacaacattaggccaattttgctgttcatcattccttatgtacactcttcagtaatcccctagcttgcatcgttgcacggggaaatgtatccaacaaagaagaaaataaaagggaaaggggaaaaatactatacagactgtactccattaaacacaagagcaaagtcgatttatgtactccaccgcgccgtactttgtcttaattatgtctattactaatagagacccccataataattctagtccatagaaaaaaccaaaatagctatgtaattttccatttttaagagagagaacgctaaaaaagaactcaataaatacgctcagaaaaatacggagaaatcgccttctttggacggatctctcctctgctcgccatcgccgacggccagagttccacctgcctccggcgaaggcttctccaccacacccgctgcggccccgccgtcattggccgcgaacacctcgttgacgaccttctcgacgtcgagcacctcgccggcctcgtcctcgtcctccggcgggggcgggatgaacggcgggcgcgccacgcggaggatgcggtcccagtcgacgccgttgaagaacgggtgcgccttgatcccgcgcgcgccgatgcgcttctcggggtccttctccaggaggcgggcgatgaggtcgcgcagcggcgtcttctcgccgacgagctccggctgcttggagaggacgcggtagaacgtctccttcctgttcagcccccggaacggcgtgcggccgtagagcatctcgtagagcaccacgcccaggccccaccagtccacggagaagtcgtgcccgctgccggcgatgatctccggcgccacgtagtcctccgtgcccacgaacgagttcgacttcgctggcgaccgcacgccagcggcggtggaggacgacgcggtggtggccgtcgaggatgaggacgaggacgacgccgaggccgtgcgcgaggtggacgttggcgacggcgagtccgccgacgcggccggcttcgtggcgccgaccgaacagaacgggaagcacaaggccgcccccggttgcctcttgcccttcgcgcggttcggggacggtgaactgggcggaggctccggcatggaatcagcaatcgttgcgtcctgctcctccggtggcggcggcggcgtcgggagcctcgtggagaggtcgaagtcgacgagcatgatgtggccgctgtcctgtatcaggacgttctccggcttgaggtcgcggtacacgatgccgaggctgtgcagatagtcgagcgccagcaccaactccgccgcgtagaagctgcaatcagaagcaacaatcaacaacggcgaggtggttagttaacccattcgtgcgcgggtgggtggcggagaagcggcgatggccaaacgggggggatgcgagaagcgtaccggatgacggagtcggagaacatcttctcggtctggcggcgccggagcgagttgaggtctccgccgccgcagcggtcgatggcgaacccgacgacggcgtcggtggcgagaacgccgcggagggaggggagcagcgggtgtcgcagcgacatgagcacgtcccgctcgaaccagatccgccggtgcccgtcctcgccgccgctcccgttcttcttgtgccgcgccgcctcccgcgagaccgccttgagcgccatggaggcctcctcctcccccgccgccgcgggcacgacgtggaacacgacgcccttggcgccccggccgagcatggacaccgccctgaggtcccccaggctgagctcccgcggcaacgccggctccggaggcgagggcgccatcgccgccgccgccatggctggcgaaggaccgcgccgatcgatcgatcgatcgaccaaccgctcgtggacgggagagaggcagtgaggaggggaggagaggatccgagtggggtcggtgcgcgagggaaagcaggggaGgggggGAGCGTGAGATATTGGGGGGGATTATTTGCGGTTTGATTC
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| CDS seq | atggcggcggcggcgatggcgccctcgcctccggagccggcgttgccgcgggagctcagcctgggggacctcagggcggtgtccatgctcggccggggcgccaagggcgtcgtgttccacgtcgtgcccgcggcggcgggggaggaggaggcctccatggcgctcaaggcggtctcgcgggaggcggcgcggcacaagaagaacgggagcggcggcgaggacgggcaccggcggatctggttcgagcgggacgtgctcatgtcgctgcgacacccgctgctcccctccctccgcggcgttctcgccaccgacgccgtcgtcgggttcgccatcgaccgctgcggcggcggagacctcaactcgctccggcgccgccagaccgagaagatgttctccgactccgtcatccgcttctacgcggcggagttggtgctggcgctcgactatctgcacagcctcggcatcgtgtaccgcgacctcaagccggagaacgtcctgatacaggacagcggccacatcatgctcgtcgacttcgacctctccacgaggctcccgacgccgccgccgccaccggaggagcaggacgcaacgattgctgattccatgccggagcctccgcccagttcaccgtccccgaaccgcgcgaagggcaagaggcaaccgggggcggccttgtgcttcccgttctgttcggtcggcgccacgaagccggccgcgtcggcggactcgccgtcgccaacgtccacctcgcgcacggcctcggcgtcgtcctcgtcctcatcctcgacggccaccaccgcgtcgtcctccaccgccgctggcgtgcggtcgccagcgaagtcgaactcgttcgtgggcacggaggactacgtggcgccggagatcatcgccggcagcgggcacgacttctccgtggactggtggggcctgggcgtggtgctctacgagatgctctacggccgcacgccgttccgggggctgaacaggaaggagacgttctaccgcgtcctctccaagcagccggagctcgtcggcgagaagacgccgctgcgcgacctcatcgcccgcctcctggagaaggaccccgagaagcgcatcggcgcgcgcgggatcaaggcgcacccgttcttcaacggcgtcgactgggaccgcatcctccgcgtggcgcgcccgccgttcatcccgcccccgccggaggacgaggacgaggccggcgaggtgctcgacgtcgagaaggtcgtcaacgaggtgttcgcggccaatgacggcggggccgcagcgggtgtggtggagaagccttcgccggaggcaggtggaactctggccgtcggcgatggcgagcagaggagagatccgtccaaagaaggcgatttctccgtatttttctga
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| Protein seq | MAAAAMAPSPPEPALPRELSLGDLRAVSMLGRGAKGVVFHVVPAAAGEEEASMALKAVSREAARHKKNGSGGEDGHRRIWFERDVLMSLRHPLLPSLRGVLATDAVVGFAIDRCGGGDLNSLRRRQTEKMFSDSVIRFYAAELVLALDYLHSLGIVYRDLKPENVLIQDSGHIMLVDFDLSTRLPTPPPPPEEQDATIADSMPEPPPSSPSPNRAKGKRQPGAALCFPFCSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAGVRSPAKSNSFVGTEDYVAPEIIAGSGHDFSVDWWGLGVVLYEMLYGRTPFRGLNRKETFYRVLSKQPELVGEKTPLRDLIARLLEKDPEKRIGARGIKAHPFFNGVDWDRILRVARPPFIPPPPEDEDEAGEVLDVEKVVNEVFAANDGGAAAGVVEKPSPEAGGTLAVGDGEQRRDPSKEGDFSVFF |
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| Function | Serine/threonine-protein kinase OXI1 [UniProtKB/Swiss-Prot:Q9LSF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017670 | OsLima_04g0017670.01 | Chr04 | 25819495 | 25821644 | - | NAM | ||
| CDS seq | atggcggcggcggcgatggcgccctcgcctccggagccggcgttgccgcgggagctcagcctgggggacctcagggcggtgtccatgctcggccggggcgccaagggcgtcgtgttccacgtcgtgcccgcggcggcgggggaggaggaggcctccatggcgctcaaggcggtctcgcgggaggcggcgcggcacaagaagaacgggagcggcggcgaggacgggcaccggcggatctggttcgagcgggacgtgctcatgtcgctgcgacacccgctgctcccctccctccgcggcgttctcgccaccgacgccgtcgtcgggttcgccatcgaccgctgcggcggcggagacctcaactcgctccggcgccgccagaccgagaagatgttctccgactccgtcatccgcttctacgcggcggagttggtgctggcgctcgactatctgcacagcctcggcatcgtgtaccgcgacctcaagccggagaacgtcctgatacaggacagcggccacatcatgctcgtcgacttcgacctctccacgaggctcccgacgccgccgccgccaccggaggagcaggacgcaacgattgctgattccatgccggagcctccgcccagttcaccgtccccgaaccgcgcgaagggcaagaggcaaccgggggcggccttgtgcttcccgttctgttcggtcggcgccacgaagccggccgcgtcggcggactcgccgtcgccaacgtccacctcgcgcacggcctcggcgtcgtcctcgtcctcatcctcgacggccaccaccgcgtcgtcctccaccgccgctggcgtgcggtcgccagcgaagtcgaactcgttcgtgggcacggaggactacgtggcgccggagatcatcgccggcagcgggcacgacttctccgtggactggtggggcctgggcgtggtgctctacgagatgctctacggccgcacgccgttccgggggctgaacaggaaggagacgttctaccgcgtcctctccaagcagccggagctcgtcggcgagaagacgccgctgcgcgacctcatcgcccgcctcctggagaaggaccccgagaagcgcatcggcgcgcgcgggatcaaggcgcacccgttcttcaacggcgtcgactgggaccgcatcctccgcgtggcgcgcccgccgttcatcccgcccccgccggaggacgaggacgaggccggcgaggtgctcgacgtcgagaaggtcgtcaacgaggtgttcgcggccaatgacggcggggccgcagcgggtgtggtggagaagccttcgccggaggcaggtggaactctggccgtcggcgatggcgagcagaggagagatccgtccaaagaaggcgatttctccgtatttttctga
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| Protein seq | MAAAAMAPSPPEPALPRELSLGDLRAVSMLGRGAKGVVFHVVPAAAGEEEASMALKAVSREAARHKKNGSGGEDGHRRIWFERDVLMSLRHPLLPSLRGVLATDAVVGFAIDRCGGGDLNSLRRRQTEKMFSDSVIRFYAAELVLALDYLHSLGIVYRDLKPENVLIQDSGHIMLVDFDLSTRLPTPPPPPEEQDATIADSMPEPPPSSPSPNRAKGKRQPGAALCFPFCSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAAGVRSPAKSNSFVGTEDYVAPEIIAGSGHDFSVDWWGLGVVLYEMLYGRTPFRGLNRKETFYRVLSKQPELVGEKTPLRDLIARLLEKDPEKRIGARGIKAHPFFNGVDWDRILRVARPPFIPPPPEDEDEAGEVLDVEKVVNEVFAANDGGAAAGVVEKPSPEAGGTLAVGDGEQRRDPSKEGDFSVFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.706334 | 0.075436 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0488700 | RBH | 2.461618 | 1.009072 | 5.214416 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41160 | RBH | 1.571778 | 0.659066 | 1.282751 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0488700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017960 | RBH | 0.093125 | 6.435958 | 3.578278 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018760 | RBH | 0.378187 | 1.055871 | 3.205587 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018450 | RBH | 0.784548 | 7.643260 | 7.045309 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018180 | RBH | 0.070018 | 0.115734 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018380 | RBH | 2.483985 | 8.474482 | 8.544049 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0381800 | RBH | 3.692769 | 17.6174375 | 4.308736 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017170 | RBH | 0.166171 | 0.229188 | 0.981555 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0381300 | RBH | 6.7357135 | 20.9287615 | 8.4484135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017510 | RBH | 0.716054 | 10.357019 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017560 | RBH | 1.157038 | 17.406309 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018020 | RBH | 0.181066 | 0.467848 | 1.386411 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018170 | RBH | 0.203783 | 3.490184 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017460 | RBH | 0.0 | 0.873271 | 3.159229 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017400 | RBH | 0.000000 | 7.762496 | 5.005445 |
