Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0023800 | OGI:02067210 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:24967881-24969215 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaaaaaatacggagaaatcttcatctctccctctgtcactgccggcctccggcgcggccgtctctacggccgccgtctcgccggcggtcgacgcagcgaacgcctcgtgcagcaccttctccacgtcgagcgcctcggcggcggcgcccgcgtcgtcgtcgtcgggcgtcgggatgaacggcggccgcgccacgtggaggacgcggtcccagtccacgccgcggaagaaggcgtgccgcttcacgccgtgcgcgccgagccgcctgcccgggtccttctccaggaggagtccgatgaggtcgcgcagcggcgtcggctcgccgggcatgtccggccgcgcggcgaggacgcggtggaacgtctcccgccggctccgcccccggaacggcgtgcgcccgtacagcatctcgtagagcaccacgccgaggccccaccagtcgacggcgtggtcgtgcccgctcccggccacgatctccggcgccacgtagtcctccgtccccacgaacgagttcgacttcgccgccgccgacgagcagcgcgtggacgacgaggaggacgaggccgtcctggacgtggacggcggggaccgggacgacgaggacgacgacggcgacggccgtgacgccgcggcgcggcgcgaggagaagcacccgaagacggccgcggcggccttcgtgctgtcgcgccgcccgccgcgggagcgcgcggtttgtggcggcggagccgtgtcgggcggcggaggaggtggcggcggcgggagcgtggtggagaggtcgaagtcgacgagcatgatgtggccggagtcctggatgaggacgttctccggcttgaggtcgcggtacacgacgccgaggccgtggaggtgctcgagcgcgagcaccagctccgcggcgtagaaccgtatcgcggcgacggagaacaccctcccggcctggcggcgccgcagcgcgttcaggtcgccgccggcgcaccggtcgatggcgaacccgacgacgctgtccgtggccacgacgccgcggagggaggggagcagcgggtggcggagcgcgagcagcacgtcccgctcgaaccagatcctccggtgcccgtcgccgcccggaccgccggcgacctccgcgcacttgtgcctcgccgcggcacgggagatggccttgagcgccatgggatcctcgtccgccgtcgccgacaccgccgcggcggcgccgccggcgggcacgacgtggaagacgacgcccctggcgccgcggccgagcacggagagggccttgaggtcggcgaggctcagctgcggcggcagcggcagcggcggcagcgaaggcggcatgctcaccat
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| CDS seq | atggtgagcatgccgccttcgctgccgccgctgccgctgccgccgcagctgagcctcgccgacctcaaggccctctccgtgctcggccgcggcgccaggggcgtcgtcttccacgtcgtgcccgccggcggcgccgccgcggcggtgtcggcgacggcggacgaggatcccatggcgctcaaggccatctcccgtgccgcggcgaggcacaagtgcgcggaggtcgccggcggtccgggcggcgacgggcaccggaggatctggttcgagcgggacgtgctgctcgcgctccgccacccgctgctcccctccctccgcggcgtcgtggccacggacagcgtcgtcgggttcgccatcgaccggtgcgccggcggcgacctgaacgcgctgcggcgccgccaggccgggagggtgttctccgtcgccgcgatacggttctacgccgcggagctggtgctcgcgctcgagcacctccacggcctcggcgtcgtgtaccgcgacctcaagccggagaacgtcctcatccaggactccggccacatcatgctcgtcgacttcgacctctccaccacgctcccgccgccgccacctcctccgccgcccgacacggctccgccgccacaaaccgcgcgctcccgcggcgggcggcgcgacagcacgaaggccgccgcggccgtcttcgggtgcttctcctcgcgccgcgccgcggcgtcacggccgtcgccgtcgtcgtcctcgtcgtcccggtccccgccgtccacgtccaggacggcctcgtcctcctcgtcgtccacgcgctgctcgtcggcggcggcgaagtcgaactcgttcgtggggacggaggactacgtggcgccggagatcgtggccgggagcgggcacgaccacgccgtcgactggtggggcctcggcgtggtgctctacgagatgctgtacgggcgcacgccgttccgggggcggagccggcgggagacgttccaccgcgtcctcgccgcgcggccggacatgcccggcgagccgacgccgctgcgcgacctcatcggactcctcctggagaaggacccgggcaggcggctcggcgcgcacggcgtgaagcggcacgccttcttccgcggcgtggactgggaccgcgtcctccacgtggcgcggccgccgttcatcccgacgcccgacgacgacgacgcgggcgccgccgccgaggcgctcgacgtggagaaggtgctgcacgaggcgttcgctgcgtcgaccgccggcgagacggcggccgtagagacggccgcgccggaggccggcagtgacagagggagagatgaagatttctccgtatttttttga
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| Protein seq | MVSMPPSLPPLPLPPQLSLADLKALSVLGRGARGVVFHVVPAGGAAAAVSATADEDPMALKAISRAAARHKCAEVAGGPGGDGHRRIWFERDVLLALRHPLLPSLRGVVATDSVVGFAIDRCAGGDLNALRRRQAGRVFSVAAIRFYAAELVLALEHLHGLGVVYRDLKPENVLIQDSGHIMLVDFDLSTTLPPPPPPPPPDTAPPPQTARSRGGRRDSTKAAAAVFGCFSSRRAAASRPSPSSSSSSRSPPSTSRTASSSSSSTRCSSAAAKSNSFVGTEDYVAPEIVAGSGHDHAVDWWGLGVVLYEMLYGRTPFRGRSRRETFHRVLAARPDMPGEPTPLRDLIGLLLEKDPGRRLGAHGVKRHAFFRGVDWDRVLHVARPPFIPTPDDDDAGAAAEALDVEKVLHEAFAASTAGETAAVETAAPEAGSDRGRDEDFSVFF |
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| Function | Serine/threonine-protein kinase OXI1 [UniProtKB/Swiss-Prot:Q9LSF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0023800 | OsLima_02g0023800.01 | Chr02 | 24967881 | 24969215 | - | NAM | ||
| CDS seq | atggtgagcatgccgccttcgctgccgccgctgccgctgccgccgcagctgagcctcgccgacctcaaggccctctccgtgctcggccgcggcgccaggggcgtcgtcttccacgtcgtgcccgccggcggcgccgccgcggcggtgtcggcgacggcggacgaggatcccatggcgctcaaggccatctcccgtgccgcggcgaggcacaagtgcgcggaggtcgccggcggtccgggcggcgacgggcaccggaggatctggttcgagcgggacgtgctgctcgcgctccgccacccgctgctcccctccctccgcggcgtcgtggccacggacagcgtcgtcgggttcgccatcgaccggtgcgccggcggcgacctgaacgcgctgcggcgccgccaggccgggagggtgttctccgtcgccgcgatacggttctacgccgcggagctggtgctcgcgctcgagcacctccacggcctcggcgtcgtgtaccgcgacctcaagccggagaacgtcctcatccaggactccggccacatcatgctcgtcgacttcgacctctccaccacgctcccgccgccgccacctcctccgccgcccgacacggctccgccgccacaaaccgcgcgctcccgcggcgggcggcgcgacagcacgaaggccgccgcggccgtcttcgggtgcttctcctcgcgccgcgccgcggcgtcacggccgtcgccgtcgtcgtcctcgtcgtcccggtccccgccgtccacgtccaggacggcctcgtcctcctcgtcgtccacgcgctgctcgtcggcggcggcgaagtcgaactcgttcgtggggacggaggactacgtggcgccggagatcgtggccgggagcgggcacgaccacgccgtcgactggtggggcctcggcgtggtgctctacgagatgctgtacgggcgcacgccgttccgggggcggagccggcgggagacgttccaccgcgtcctcgccgcgcggccggacatgcccggcgagccgacgccgctgcgcgacctcatcggactcctcctggagaaggacccgggcaggcggctcggcgcgcacggcgtgaagcggcacgccttcttccgcggcgtggactgggaccgcgtcctccacgtggcgcggccgccgttcatcccgacgcccgacgacgacgacgcgggcgccgccgccgaggcgctcgacgtggagaaggtgctgcacgaggcgttcgctgcgtcgaccgccggcgagacggcggccgtagagacggccgcgccggaggccggcagtgacagagggagagatgaagatttctccgtatttttttga
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| Protein seq | MVSMPPSLPPLPLPPQLSLADLKALSVLGRGARGVVFHVVPAGGAAAAVSATADEDPMALKAISRAAARHKCAEVAGGPGGDGHRRIWFERDVLLALRHPLLPSLRGVVATDSVVGFAIDRCAGGDLNALRRRQAGRVFSVAAIRFYAAELVLALEHLHGLGVVYRDLKPENVLIQDSGHIMLVDFDLSTTLPPPPPPPPPDTAPPPQTARSRGGRRDSTKAAAAVFGCFSSRRAAASRPSPSSSSSSRSPPSTSRTASSSSSSTRCSSAAAKSNSFVGTEDYVAPEIVAGSGHDHAVDWWGLGVVLYEMLYGRTPFRGRSRRETFHRVLAARPDMPGEPTPLRDLIGLLLEKDPGRRLGAHGVKRHAFFRGVDWDRVLHVARPPFIPTPDDDDAGAAAEALDVEKVLHEAFAASTAGETAAVETAAPEAGSDRGRDEDFSVFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0603000 | RBH | 0.181654 | 0.368264 | 0.499851 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39090 | RBH | 0.122844 | 0.247688 | 0.128671 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0603000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023950 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024140 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0385300 | RBH | 0.7062115 | 0.444948 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023510 | RBH | 0.0 | 0.120148 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0413000 | RBH | 0.228192 | 0.123599 | 1.085105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017670 | RBH | 0.706334 | 0.075436 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0023750 | RBH | 0.126677 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0023800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023820 | RBH | 0.0 | 0.0 | 0.0 |
