Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0016570 | OGI:04071670 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25006223-25007030 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacttattcagaagggggagagacgagtaacaaatcgataaaacaatactaagatccgctaaaacaaagcgatatcccaaaggaataactaaaaaacttaataaaattgatatgactgctatagacggtccaatgctaaATaagggaatatcccctcgggatggcaagatatcctctttaaaaagtagtttagttccatctgctatagcttgaagcagtcccagggggccagcatattcaggaccaatacgttgttgtatcgatgcggatatttctctttctaaccacacaattacgagtacttctattgtgattcccagtaagagggtcaaaatgggtagaatccatatcagtccatagacttcttttaataattccaagttcgaaaaagaattgatagcttctacctgtaccttgtctattatcatttcaacgatcaacttctcccatAatgatatctatactacctaatatcgtcatgatatcagccaatttcaTttttttgactagctgaggaagaatttgcaaattaaaaaacgggtggacgaattttccatctccaggggaaaagactatcatctcctaccagataaattcctaattcaccttttggggcttccactcttgcataaagctcttgttttgacaattcaaaattgggtgaaggttttttttaccaagaaatcgattcaaaatcattccattcggattctttgctttcttaaagcgtcggacttctaaattctcataagggcccccaggaattttttctacatcctgttgaataattttgattgattccctcat
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| CDS seq | atgagggaatcaatcaaaattattcaacaggatgtagaaaaaattcctgggggcccttatgagaatttagaagtccgacgctttaagaaagcaaagaatccgaatggaatgattttgaatcgatttcttggtaaaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaagatatcatTatgggagaagttgatcgttgaaatgataatagacaaggtacaggtagaagctatcaattctttttcgaacttggaattattaaaagaagtctatggactgatatggattctacccattttgaccctcttactgggaatcacaatagaagtactcgtaattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatggaactaaactactttttaaagaggatatcttgccatcccgaggggatattcccttATttagcattggaccgtctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgctttgttttagcggatcttagtattgttttatcgatttgttactcgtctctcccccttctgaataagtag
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| Protein seq | MRESIKIIQQDVEKIPGGPYENLEVRRFKKAKNPNGMILNRFLGKKNLHPILNCQNKSFMQEWKPQKISLWEKLIVEMIIDKVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIVLSICYSSLPLLNK |
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| Function | NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [UniProtKB/Swiss-Prot:P12124] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016570 | OsLima_04g0016570.01 | Chr04 | 25006223 | 25007030 | - | NAM | ||
| CDS seq | atgagggaatcaatcaaaattattcaacaggatgtagaaaaaattcctgggggcccttatgagaatttagaagtccgacgctttaagaaagcaaagaatccgaatggaatgattttgaatcgatttcttggtaaaaaaaaccttcacccaattttgaattgtcaaaacaagagctttatgcaagagtggaagccccaaaagatatcatTatgggagaagttgatcgttgaaatgataatagacaaggtacaggtagaagctatcaattctttttcgaacttggaattattaaaagaagtctatggactgatatggattctacccattttgaccctcttactgggaatcacaatagaagtactcgtaattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatggaactaaactactttttaaagaggatatcttgccatcccgaggggatattcccttATttagcattggaccgtctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgctttgttttagcggatcttagtattgttttatcgatttgttactcgtctctcccccttctgaataagtag
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| Protein seq | MRESIKIIQQDVEKIPGGPYENLEVRRFKKAKNPNGMILNRFLGKKNLHPILNCQNKSFMQEWKPQKISLWEKLIVEMIIDKVQVEAINSFSNLELLKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIVLSICYSSLPLLNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 36.888016 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016770 | SBH | 1.539027 | 0.000000 | 2.548462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017520 | SBH | 1.434488 | 0.000000 | 1.143250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017250 | SBH | 1.739343 | 0.000000 | 1.101989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016970 | SBH | 1.745644 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017220 | RBH | 205.708618 | 15.102688 | 179.990768 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016010 | RBH | 0.131589 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0366700 | RBH | 107.0539475 | 5.1701395 | 12.38464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016440 | RBH | 40.203274 | 25.296263 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016440 | RBH | 90.632393 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017030 | SBH | 42.418522 | 20.548780 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016240 | RBH | 1.434647 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016290 | SBH | 12.577531 | 0.000000 | 0.000000 |
