Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0014520 | OGI:04067590 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23477248-23479660 | ||||||||
| Gene Symbol | OsRab2A1, OsRab2 | ||||||||||
| DNA seq | atggcgcggagcacgagcgaggcgccgacgccgagggcgaaggggagcgagattccggcggcggcgacggcgttggcggtgcggtcgggtcgagctcgaggccgaggaggaagaggaagaagtgcaagccgatgttggcgagcgtgtcgagcacggtgaggctctccttggggaagacattgccgggtggttcttctcggcgtcgtcaggtgtggagtaggaggtcctccagcggccaccggtgccgagtaggccgcgcgcgctccgggcgccgcggccgtcgccgagcaagccgcgaccgggagatgagagaaAGGagggagaaagagaggaggagagatggagagctgacacgtgggctcaagagaattttttgacatttcacgtgatttttctctcttttgcaaccgaaaatcattattttaattggtgcgttgtccattaggaaattaccacgtttataaagtgttttccctcaaaagtgagtttgagcagtgtcccacggctaaaaccaaaaaaatcatagtaccctgcagcagtatagtaccgctacactagctaagattttggttgttcgattttggttgtgccaaacttcagtcctttttcataacatcaacctatcatacacataactttttagtcacatcatttctaatttcaaccaaaatttaaacttttagctgaactaaacAAagccttcgatgctattcactttgcatggtagagtgactggctcagcttttgatgcctgtctttagccttcaatgtagcatgactgaTGtttgcatggcccgatggccggtgatgctgcccgcgtgcatgcggcgagagatcgcaggatcttctgacgtgaactttcccctgacgtggtcactgacatgcggttccgtggatggtggggctcacataatcagtgtccgtccctctaacttgtacatgagatgatctctttccgagattgcgtggcgtcccgcgtggcaatgtgagggacagtgagggtgacaacactagtaaggccttgtctgaatgagccacaattccagcccatacacacattaaactaaatgtatacacacattaatatggaggagtccatttaaatatgctttcgcctattgaagatatctagccgtggttggttgctagatgtcgctgaatctcagtgtgcttggatttataaattacaagaattgtataTATtagaattagttatttgggaaaaaattagttccagagcatctaaattgtttttagttctcgctgaaaactagattatcttcttggatgaattttggcctcttatctttcatagtaccaaagggcttctggtatttcctatggataatcagcacatcgaattacggaattgactatgttgcaaaagccagaagctgcactctgtaatgtagtctgacatttggtacgtgcattgcaaacagtgggacacagcaggacaggagcgattcagaaccatcactagcagctactaccggggagctcatgggataactgtaagTttttgcaacctctcaacattttctttttatactttaatgtgtgttttcagtaaacatttagtttccatggatgcatccagatcgtctatgacattacggatatggagagcttcaacaatgtgaaagagtggatgagtgaaatcgacaagtatgccaatgacatcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagggttgttgaaactgcagcagcacaggtcgcattgcaaactaccctattacactatggtctatggaaggcttatcaatgcaaaagttatgttatattttgttaagctaaatgaaaaggtacaaatcactgcaggcttatgctgatgagataggcatttcattcctcgaaacaagtgctaaggactcgatcaaagtctaagaggctttcttggcgatgtgtgcctcaatcAaaaagcagtaggataaatgacagtggataaggcttcagagtttcttataaacaagttatgctgctgaaacttttgtttctaatttgcagaaaatctgggagccaggcagccctggAgaggaaggcatccaatctagttcagatgaaaggccagccaattcagcagcagcagcagcagcagccacagaagagcagctgctgttcatcatgatggcacaatggtctgggaacttccatgagttgggatgaacatggcatatctgctaagtgtgtacctctgccttctcatagttttgtgcacTtttggttaccgcaagtgttggtaaatctgttgaaatcgagtcaagaacctaatttcccggtttcgatgattctctaatcaatatcgcatctagaaagttgtaccatattaaacagatacatgtaatttagtaagatttcagtctgaaaggtc
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| CDS seq | atggcgcggagcacgagcgaggcgccgacgccgagggcgaaggggagcgagattccggcggcggcgacggcgttggcgtgggacacagcaggacaggagcgattcagaaccatcactagcagctactaccggggagctcatgggataactatcgtctatgacattacggatatggagagcttcaacaatgtgaaagagtggatgagtgaaatcgacaagtatgccaatgacatcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagggttgttgaaactgcagcagcacagaaaatctgggagccaggcagccctggAgaggaaggcatccaatctagttcagatgaaaggccagccaattcagcagcagcagcagcagcagccacagaagagcagctgctgttcatcatgatggcacaatggtctgggaacttccatgagttgggatga
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| Protein seq | MARSTSEAPTPRAKGSEIPAAATALAWDTAGQERFRTITSSYYRGAHGITIVYDITDMESFNNVKEWMSEIDKYANDIVCKLLVGNKCDLAESRVVETAAAQKIWEPGSPGEEGIQSSSDERPANSAAAAAAATEEQLLFIMMAQWSGNFHELG |
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| Function | GTP-binding protein YPTM1 [UniProtKB/Swiss-Prot:P16976] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014520 | OsLima_04g0014520.01 | Chr04 | 23477248 | 23479660 | + | NAM | ||
| CDS seq | atggcgcggagcacgagcgaggcgccgacgccgagggcgaaggggagcgagattccggcggcggcgacggcgttggcgtgggacacagcaggacaggagcgattcagaaccatcactagcagctactaccggggagctcatgggataactatcgtctatgacattacggatatggagagcttcaacaatgtgaaagagtggatgagtgaaatcgacaagtatgccaatgacatcgtatgcaagcttcttgttggtaacaagtgtgatctggcagagagcagggttgttgaaactgcagcagcacagaaaatctgggagccaggcagccctggAgaggaaggcatccaatctagttcagatgaaaggccagccaattcagcagcagcagcagcagcagccacagaagagcagctgctgttcatcatgatggcacaatggtctgggaacttccatgagttgggatga
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| Protein seq | MARSTSEAPTPRAKGSEIPAAATALAWDTAGQERFRTITSSYYRGAHGITIVYDITDMESFNNVKEWMSEIDKYANDIVCKLLVGNKCDLAESRVVETAAAQKIWEPGSPGEEGIQSSSDERPANSAAAAAAATEEQLLFIMMAQWSGNFHELG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0470100 | SBH | 5.023602 | 4.032641 | 6.366091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39440 | SBH | 3.482121 | 2.710293 | 1.832605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0470100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0344100 | SBH | 3.0257975 | 1.109126 | 1.2726965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013890 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0340800 | RBH | 0 | 0 | 0.013539 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022730 | SBH | 0.635412 | 0.951549 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014260 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014160 | RBH | 0.0 | 0.0 | 0.0 |
