Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g39440 | OGI:04071300 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:23492935-23495366 | ||||||||
| Gene Symbol | OsRab2A1, OsRab2 | ||||||||||
| DNA seq | AAATCGTCCACGTAACCCTCCTCTCCTCTCCTCGCCTCGCCTCCCTCCCGACGAAGGAAATCCCACCCTCTCCCCGCCCCGCGAATCCGCCGCGGTAAACCACCCCCCGCGCCGCCGCCGCCGGTGCGGGCCGAGGCGGCGAAGATGTCGTACGCCTACCTCTTCAAATACATCATCATCGGCGACACAGGTCCGGCCCCCCTCCTCCAACGACGAGAAATCTCGTTTCCCTCTATATGACTGTGTTGTTGTTGTGTCTGATGATCGATGGTGGCGGCGGGGGCGCGCGAGCAGGGGTGGGCAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTCCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAGCAGGCCCGTCAAGCTCCAGATTTGGGACACGGTTGGTTATACCCCCCGCCTCGAACTCTCTCTGCTGCTGCTACTCGTGTAGATCGATTGGATGATGTTTCTAGCGTAGCCATCTGTTACCAAGCTGTTCAATTGAGGCGGAGAGTGCTTGGATTGGTTAGGTAAACTTGGATTACTTGTGGCTTTTGGTTTGAGATTGAAAATGCCATTCTAGTTTATGGCTTTATGCGGGCTTCGCCGTTGGTATGTACTACCGATAACCTGAAATTCAGTTTTTAATCACATCACTTTCTGTACAGATTAGCTCTGGATGAGAGAGCCAAAACGTGAGGCTTGAAGTTACATTGTCTATCTGTTATTTTGAGTTTTCCTTGATACCTATAAGATGGCATGTTCAATTGTCAAGTTAAACATTCATCTTATGCTTTTGTGGCTCTGACAACATTTCAGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGTTTTTACCCAATCTGTCAAAGTTGCTTGGTTTATTTCTCAAAAAGGAAAAAAAAAGGGGCTTTGGTTTGATTTAAGTGCATGATTTCCCTTTAAACTTTGCTAACCTGAGTGATCACATATGTTTACGTTATACTGACTTCAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGTAAATGATTTTTTCTTATCGGTGCATATGTGCAAGTAAGAGCTTTCTCCAGATGTTTTTCTTATCCCAACTGTTACACAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGTAAAGTTTTTTAGGAATGTATGTAATGTATTGAGGTAAATTTACAAACACAAATCATATTGTTCTTCTGAGCATGTCTGATGTGAACTAGATCATTATTTATACAACATAAGTGTATTCTTAATTAACATATGCCCTGCAAAACTTTCCTGAGAGGAATAACTGAATAAGTAGTAGAAACAGAGTCTGTAATTAACTTATGCACTGCAAAAACTTTAACATGGCCCTAGAAGCACACACAAAAAAAAACTGTGTATACATTTTCAGGTCAATGTTTCCTGTAATTGAATGGAATAACTGAACTTGAAACTGAGTCTGTAATTAAACCGAAAATGATCGAGGGACCAAAAATGGTCATTTTGCCTCTTTTAATGGCAAAAAAGGAGATGTATTACAAAATGCCTATCCTCCCAAAGAAAAAAAAAGAAGAAAAGGAGGTGTTTTAGATTTCTATATTGGTATAGGAATCAAATGAGTGCAAGAGCACTGCTACATTCTTCTCCTCAAGAGAGCACTTGTGATTGCTTTTGGCTACTGTATTGACATATTGACCTGAGCATGAGTTTTGTGTCCTTTTAAAAATTTGCAGGCTAATGGAATCAAACTTGGTTACACGGTCCCGGGCCAATCCGGAGGTGCTGGTTCCTCGTCTTCTCAAGGGGGTGGCTGCTGCAGTAGCTAATGGAACGATATACTCGGGTGTCTATCGTGTGTCACACTGCCACTTACCCTTGGAATCATCTTCTTGATGCTGACTGAAACGTAGTTGCTCCAGTGTTAACATGCCAAAAGACTCGGTTCATTTATGTCTGCTGTGCATAAACAGTAGTCTCTAGATTTTTTTTTACAGCTTCATGCCACTTGGCATCTAGGAATTCTTATTGTCTGCATGTGTAATTACAATAGCAATGCATGGTTTGAATATTTGGTACTTTGATCCTGTTGTTTCAATCATTTGCTTTTGTTTATTATCAGGCCACCGTCTATCATTGAAGTC
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| CDS seq | ATGACTGTGTTGTTGTTGTGTCTGATGATCGATGGTGGCGGCGGGGGCGCGCGAGCAGGGGTGGGCAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTCCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAGCAGGCCCGTCAAGCTCCAGATTTGGGACACGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGCTAATGGAATCAAACTTGGTTACACGGTCCCGGGCCAATCCGGAGGTGCTGGTTCCTCGTCTTCTCAAGGGGGTGGCTGCTGCAGTAGCTAA
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| Protein seq | MTVLLLCLMIDGGGGGARAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDLSNEANGIKLGYTVPGQSGGAGSSSSQGGGCCSS |
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| Function | Ras-related protein RABB1c [UniProtKB/Swiss-Prot:P92963] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39440 | LOC_Os04g39440.1 | Chr04 | 23493028 | 23495366 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTGTGTTGTTGTTGTGTCTGATGATCGATGGTGGCGGCGGGGGCGCGCGAGCAGGGGTGGGCAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTCCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAGCAGGCCCGTCAAGCTCCAGATTTGGGACACGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGCTAATGGAATCAAACTTGGTTACACGGTCCCGGGCCAATCCGGAGGTGCTGGTTCCTCGTCTTCTCAAGGGGGTGGCTGCTGCAGTAGCTAA
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| Protein seq | MTVLLLCLMIDGGGGGARAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDLSNEANGIKLGYTVPGQSGGAGSSSSQGGGCCSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39440 | LOC_Os04g39440.2 | Chr04 | 23492935 | 23495366 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTACGCCTACCTCTTCAAATACATCATCATCGGCGACACAGGGGTGGGCAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTCCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAGCAGGCCCGTCAAGCTCCAGATTTGGGACACGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGCTAATGGAATCAAACTTGGTTACACGGTCCCGGGCCAATCCGGAGGTGCTGGTTCCTCGTCTTCTCAAGGGGGTGGCTGCTGCAGTAGCTAA
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| Protein seq | MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDLSNEANGIKLGYTVPGQSGGAGSSSSQGGGCCSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39440 | LOC_Os04g39440.3 | Chr04 | 23492935 | 23494783 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTACGCCTACCTCTTCAAATACATCATCATCGGCGACACAGGGGTGGGCAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGCGGTTCCAGCCCGTCCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAGCAGGCCCGTCAAGCTCCAGATTTGGGACACGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGTAAAGTTTTTTAGGAATGTATGTAATGTATTGAGGTAA
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| Protein seq | MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDLSNEVKFFRNVCNVLR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39440 | LOC_Os04g39440.4 | Chr04 | 23492935 | 23495366 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCAATTGTCAAGTTAAACATTCATCTTATGCTTTTGTGGCTCTGACAACATTTCAGGCAGGCCAGGAGTCATTCAGATCGATAACTAGATCGTACTACAGAGGGGCTGCCGGTGCTCTTTTGGTTTATGACATTACAAGGAGGGAGACATTCAATCATCTTGCGAGCTGGCTGGAAGATGCAAGGCAACATGCGAATGCTAACATGACAATAATGCTTGTTGGAAATAAATCTGATCTATCTCATAGGCGTGCTGTGAGCTATGAGGAAGGCGAGCAGTTTGCAAAAGAGCACGGTCTGATATTTATGGAGGCGTCTGCAAAAACCGCGCAGAATGTTGAGGAGGCTTTTGTCAAGACTGCTGGAGCAATATACAAGAAAATTCAAGATGGTGTCTTTGATTTATCTAATGAGGCTAATGGAATCAAACTTGGTTACACGGTCCCGGGCCAATCCGGAGGTGCTGGTTCCTCGTCTTCTCAAGGGGGTGGCTGCTGCAGTAGCTAA
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| Protein seq | MFNCQVKHSSYAFVALTTFQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKSDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDLSNEANGIKLGYTVPGQSGGAGSSSSQGGGCCSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.482121 | 2.710293 | 1.832605 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0470100 | RBH | 5.023602 | 4.032641 | 6.366091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37420 | RBH | 2.144606 | 4.042351 | 3.631576 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0470100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016590 | RBH | 1.383038 | 15.780334 | 4.039559 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017340 | RBH | 0.489469 | 1.597370 | 2.979926 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017060 | RBH | 3.537230 | 7.235475 | 13.179101 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016790 | RBH | 0.420645 | 0.357145 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017020 | RBH | 8.421198 | 20.923876 | 20.538200 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0365600 | RBH | 6.9333895 | 11.8785355 | 18.1716105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015820 | RBH | 0.637335 | 1.554488 | 2.306960 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0364600 | RBH | 9.755861 | 22.6889595 | 7.619233 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016370 | RBH | 0.233287 | 0.567325 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016250 | RBH | 0.929665 | 23.302427 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016240 | RBH | 9.599961 | 19.433058 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016760 | RBH | 2.627892 | 1.765732 | 2.274177 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016850 | RBH | 1.235520 | 11.142554 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016060 | RBH | 1.070126 | 7.392932 | 2.675385 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016110 | RBH | 2.644404 | 26.306335 | 8.307534 |
