Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g37420 | OGI:02064420 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:22599387-22602227 | ||||||||
| Gene Symbol | OsRab2A2 | ||||||||||
| DNA seq | ACGTTTCCGTTTCCCCCTTCACGCTAACAAAATTCCCCTTCTTCTCTCCTCTCTCCTCTCTCCTCGTCATCCTCTCCCTTCCCCCAACTCCCCTCGCCGGATCGTTCGCGATCAATCCGCCGCCGCCGCTTTTCTCCTCCGATCCAGCGCCGCCCCCCGAGGGAGAATCTTCCGCCGCCGCGGCCGCACCCCGCACCCTCACGCAGTAGGGATCGAGGATGTCGTACGCGTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGCGCGCTCCCTCCCCTCTTTCCTTGGATTGGATCCGGCCGCGCCGCCGCCGGTGCCGGGGAGATCTGCCCCGCCGCGGAGCATCTGGTGTGGTTTAGATTGATTTGGTCTCGTCTGGGTCTGATCGGGTTTTGGTTTTTTTGCTTTGCGTCACCCTGCAGGCGTGGGGAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGAGGTTCCAGCCCGTGCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGCATGATCACCATCGACAACAAGCCCATCAAGCTCCAGATTTGGGACACGGTCCGTACTCTTCCCCTTCCCTTCTCCGGTTCTCCCCCTCCTTGTAGCTTGCGTAGTACGCTTGTGATGTAGGGTTAACCGAATCGACACATGTATTCGGTGTCAAGAAACGTATTCGATTTTTTTTGGTAATTGCCTCAGCGATGCCTATCCTTTGTTTATGTTCATGTTGCCAAACTATTCTGTGCAGTTGATGATGTGGTGATGATTTTGCTATCGCGTAGCTTTTGGGTAGTTTCTATTGTGGTGGCTTTCGTGTAGCGAAATGCGTTATCCTTTGCTAATGTACCAAAAATGTGTAAATATTTGTGGAATCTCACAAAATTATAATATGCTAGGAATTGTTTTACACAAATATACTCTATCATACTTATGAGGTAAATCGAAATGCTCACAGAGGTATTGTTGACCTGACTTTTAACAGTTGAACTTCATATGAGTGACACTGATATTTAAGAAAAAGAAAAGGTCTCACATCTCTGCTGAGTTCCTAAAACCATGGGTATCAGTTCATCCTTGTGAGTGGTTTTGTTCATCATATCATGCCCATATTAGCCTTTTTTTTATTTACATAACAGGGTTAGGCAGTAAAGAATTCTTAATTAAAATGCCATACGGTGAAGCATTTATGTTTTGGGTCTGCCTGTACAGCTAAATGACTTTCTTGAGTTTGTTGTCATGACACACACCCATCTCATACTATTCTCTCGCAATAATGCAGGCTGGTCAAGAATCGTTCAGATCTATAACTAGATCATACTACAGGGGTGCTGCTGGTGCCCTTTTGGTGTATGATATCACCAGGTGCATGTTAAATGCAATATATTGCTTATGATCTTAACTTTCTTAATATGGATATTGCTCACAGTTGGCTAACTTAAACTTCAGGAGAGAGACTTTTAATCATCTTGCTAGCTGGCTAGAAGATGCAAGACAGCATGCAAATGCCAACATGACAGTAATGCTTATTGGTAACAAATGTGATCTGTCTCATAGACGTGCTGTCAGCTATGAGGAAGGTGAACAATTTGCCAAGGAGCATGGCCTAGTATTTATGGAGGCATCTGCAAAAACTGCACAAAATGTTGAGGAGGTGATTGTTTGTCCCTGGTACATTTGAGTTTGGTTGCAGGGTTCATTTCTCTTGAAAACTTATCGTGTGTCTTCTTGTGATGTAGGCATTCATCAAGACTGCTGGAACAATTTACAAGAAAATCCAAGATGGTGTCTTTGATGTATCTAATGAGGTGAGCTTTTTATTGCTTGCCCCTTTTCCCTTTTAAACTCTCAGTTCAGTTTGTGCTAATCAAAGATAATTAGTGGAATGTAATTGAATTCAATCTTGTTCGTAAGTTGCAATGGCACCATACATCGGTCATGCTATGTTTTGAACCCCCAAAAGAACAAGTTGACATTTTTTTCTGAACTACATGTATAGGATGATACTATCTGTGAATTCGACACACCTCTTCTATTTGATTACAAGTTTTATTGTTAAGTTCTCCAGTTAGTATTGATTAATGAATAGAAAGCTGTGGTGTTGTATTCTAGACTATTGACAAGTAATAACATATACATGAAACTATTCTGATAGAGAGGTTGGTTGGAGTGTCAATGTGCCAGCTGGCTCCCCTCTTATCACATGATTTTTCTTTTCCAGTTCAGCAACCACTTTATCAATATTCTCGCATTTTAAGGAAGTATGATATATTATATTTCACAGCTACTAACTTATCTTCCAAAACTGCTGCAGTCTTATGGGATCAAAGTTGGCTATGCGGTACCAAATGCTTCAGGTGGTGGAGCTGGCTCATCCTCTCAAGGTGGTGGCTGCTGCGGCTAAAGGCAGCAGCAGTATCCAACTAGTCATGTATCCAGCCTAAATTGAAAAGTCAGATCATGTGTAACATGGCCCTCAATATTTCGATGTTGCCTTGTGGAAAAAATAGCTGGTATTGGTACTGTGTTTTTTACTCCTTCCAGCTACCGACGTTCAGTGTTAGTGCACAAAATGTTCATCCATGGTAGTTTGTCTACATTGCAGTCATGTAAAGTTAAACATTCACGATTTCTGTACTTTTGCATGTGTAACTAAATGAAATGGTGTGTTACATTCATTCCTTCAATCAAATAATCCATAGAAACAAACTGGTTTGTAACTATTGTAACTAGTCGCTAGTGTCCATGGTATTTTCGATTGTGGAACATAATTAGTTTAATCTGCTTCAGTATAACTTAAGCCGGCTTTATCCTGTGTATGCATCAGCTTCGCTCC
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| CDS seq | ATGTCGTACGCGTACCTCTTCAAGTACATCATCATCGGCGACACAGGCGTGGGGAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGAGGTTCCAGCCCGTGCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGCATGATCACCATCGACAACAAGCCCATCAAGCTCCAGATTTGGGACACGGCTGGTCAAGAATCGTTCAGATCTATAACTAGATCATACTACAGGGGTGCTGCTGGTGCCCTTTTGGTGTATGATATCACCAGGAGAGAGACTTTTAATCATCTTGCTAGCTGGCTAGAAGATGCAAGACAGCATGCAAATGCCAACATGACAGTAATGCTTATTGGTAACAAATGTGATCTGTCTCATAGACGTGCTGTCAGCTATGAGGAAGGTGAACAATTTGCCAAGGAGCATGGCCTAGTATTTATGGAGGCATCTGCAAAAACTGCACAAAATGTTGAGGAGGCATTCATCAAGACTGCTGGAACAATTTACAAGAAAATCCAAGATGGTGTCTTTGATGTATCTAATGAGTCTTATGGGATCAAAGTTGGCTATGCGGTACCAAATGCTTCAGGTGGTGGAGCTGGCTCATCCTCTCAAGGTGGTGGCTGCTGCGGCTAA
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| Protein seq | MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTVMLIGNKCDLSHRRAVSYEEGEQFAKEHGLVFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYAVPNASGGGAGSSSQGGGCCG |
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| Function | Ras-related protein Rab-2-A [UniProtKB/Swiss-Prot:P49103] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g37420 | LOC_Os02g37420.1 | Chr02 | 22599387 | 22602227 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTACGCGTACCTCTTCAAGTACATCATCATCGGCGACACAGGCGTGGGGAAGTCGTGCCTGCTGCTGCAGTTCACGGACAAGAGGTTCCAGCCCGTGCACGACCTCACCATCGGCGTCGAGTTCGGCGCCCGCATGATCACCATCGACAACAAGCCCATCAAGCTCCAGATTTGGGACACGGCTGGTCAAGAATCGTTCAGATCTATAACTAGATCATACTACAGGGGTGCTGCTGGTGCCCTTTTGGTGTATGATATCACCAGGAGAGAGACTTTTAATCATCTTGCTAGCTGGCTAGAAGATGCAAGACAGCATGCAAATGCCAACATGACAGTAATGCTTATTGGTAACAAATGTGATCTGTCTCATAGACGTGCTGTCAGCTATGAGGAAGGTGAACAATTTGCCAAGGAGCATGGCCTAGTATTTATGGAGGCATCTGCAAAAACTGCACAAAATGTTGAGGAGGCATTCATCAAGACTGCTGGAACAATTTACAAGAAAATCCAAGATGGTGTCTTTGATGTATCTAATGAGTCTTATGGGATCAAAGTTGGCTATGCGGTACCAAATGCTTCAGGTGGTGGAGCTGGCTCATCCTCTCAAGGTGGTGGCTGCTGCGGCTAA
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| Protein seq | MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTVMLIGNKCDLSHRRAVSYEEGEQFAKEHGLVFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYAVPNASGGGAGSSSQGGGCCG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.144606 | 4.042351 | 3.631576 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0586400 | RBH | 3.665580 | 6.946908 | 16.144390 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39440 | RBH | 3.482121 | 2.710293 | 1.832605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0586400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022810 | RBH | 1.483520 | 88.886810 | 18.598568 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022920 | RBH | 0.905856 | 21.058226 | 6.626723 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022890 | RBH | 2.744433 | 72.130692 | 23.412594 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022610 | RBH | 0.755024 | 2.734191 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022550 | RBH | 6.949628 | 70.066063 | 40.515091 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0369700 | RBH | 11.8426645 | 24.0579085 | 25.461346 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022290 | RBH | 0.408444 | 7.250513 | 3.379703 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0397300 | RBH | 15.9488645 | 32.772648 | 17.502183 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022730 | RBH | 0.635412 | 0.951549 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022470 | RBH | 1.410531 | 48.623722 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022920 | RBH | 0.000000 | 43.178349 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022620 | RBH | 1.626045 | 3.615123 | 4.368290 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022420 | RBH | 0.686767 | 28.809332 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022870 | RBH | 1.211489 | 19.505093 | 11.913474 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022710 | RBH | 1.862709 | 71.376198 | 22.003225 |
