Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0014310 | OGI:04067250 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23283404-23288531 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | cgtctccaaggcaaagcataatgtatttcctattccttatcaaagtagagccttataatttcaacctagcattactcattttcttcatttcttgccactattcctcgtgcatgtatacatacatacatacatacatacatacatacatacatacatacattacagctatacgcatatacagttttcagtcgcatagaattataattctatgtttttttttcttcagatgatctccttgccgttgccgtcgccttcggcggcgacctgagcggaggcggaggcgtcgcagccgtcgtcggcgccgccggagttgtaccacctcgcgcagagcaggtagcAGaagaagttgatcacgctgagcacggcgagcatccagtagaagaggtccagcctgtccttgtccaggtcgttgtcgccgagccacccgccatggccgccgccgccgcggctcgccgtgacacggttcacgagcgacacgagcaccgagctgaggtagaagccgaaggcgtaggagcagtaggtgagcgccgtgaggaaggactgcatgccggcgccgcgcgcctgcttgtagaagaactcgatgagccccacggcggtgaacatctccgacacgccgaacacgaggaactgcggcacgatccacagcacggacatcgcccgcggcggcgcgccgccggaggacagggacaggtcgcggcgcctgtgctcgacggtggcggcggcgaccatggagagcggcacggtgcagaggcccacgccgatccgctggagcggggtgatcccggaccgcgcccctgtggcgcgcctcatgagcgggacgaggaggagctcgtacgccgggacgagcgccagcagcatggcgtaggggatggcctgcagcgacgccggcgggatgcggaacgaggagccggcgccgccgagcgcggtgtccatggcgctcccctgctgcaccgagaacgtctgcagctgcgccagcacggtgttgaagacgatggtgcacgcgaagatgggcgccacggcgaggagcgtcttggcctgccgCACctcggccgccgtgcacagccgccacgggctctccggcttcgtgttcggcccctgctccgccgccctgatgcacgccttgtccaagaacctgcacacgtttccgtcacggatcagtcacacgcagacgcagcaacgtgcatggcgcgcggcaccgccgccgccggcgccggctgctgggacgaggagctcacctgaacttgctggcgtggcggaagctgccgccggcgaggtgcgccggctcgcaaaCGccggcattgacgggatcggaggagctggaagggcagatttgcttcctcttggtgtaggcggcaacaaacacctacaGGaacagtatcagtattgtcagggttgaaggtaaactaacctgcaagatttttttttaaaaaaaattaaaaattatatcgaaatgagaagatttttgaagataaaagctcttcaagaataaaccattttgcaaaaaaaaatcatggtactgttataatatttttgtttaaaaaatatggtgttaatttgacatgaacagcaaacacatgatactgttcttacttgcataaagaaagcttgtcatattgaacccatgctaaaataaagcaactgcatatattgatgattgatcatgtgacagtttaaataataggcagacagttctgtcatcatcgctaaggatcaaaaaccatcgctgcactgaactgacaggctaacagtacttaattaatcataagaacattttaaacagcctctcagacaaaacctagcagatggcacatcggttcatagtatcttactagatctgatcgacaaagcagatgcaaaaactattttggcccatgatctggtttcgaaccactgaactgtagaatatgacaaaactgacgaccatgatgcatggccatggagagccactctgactctgaagaactctgaatggtgacaaaaggacatctacctactaattcgagctatatcttatctaatcacacggttgcgactataatataatgcgtgatcatatcaatgatcatgacagaaagtttcatgcaaatgacaaactgcagtttcttggaactcccactaaccactgcccttgtttaacataatttggcgatgggcacgccactaacacaacagtccatgctctgtcagtttttagaatgcagcgagattgtacggttgcaggtaaaccacctcgcctatagctatttaacttaatcatgttgctaagataattggacaaccatgtctgaaaacatttggctcctgtgggctagtgaggcagtgagcaacctagttcagtagctgacaatctgacaagaatcttatcaactgttcgaccttaaaaatcaacttggtaacgaatatgcagttttttttaatgcaaatacatatctcggctgtaacaaaattcaaacgagagcatcttgatcttttcggttattcggttattttacggtttcagaatggtatcatcctatcattactttttcttttaaagatgacggaagaatattgcagccggcctctgcatcatcattagatgctcacagtcaacgagattatgtaaatataaatatattagtactatgtttttttcaaacacttcaaactgaaactaaagccatattaatcttttagctcattgttgtttcaaattaaggtttcagaattaatggtattataaaagtgtgttaattacttattttcctacccttgcaatgggcgtgaagatgctgccctgaggaggcttgttccggtagaaggcggcgccggagacgaggctgacgagcccggccgccatggcggcggcggagatgccgaacccgacgtccatcccggagtgcgtctgcacccagaccagcgccgtcagcgcgacgagctcgccggcgcagaagctgaagtaggccgaattgaagtaggtcgagagcctcttggcattgtccgccgcggcggcgccgccgccgccggccgcggccgcgaactggtcggcgccgtgcgcgatcatgttgggcttgaggcagccgctgccgagcgccacgaggtagagcgcggcgaagaagatgctcgccttgatgccccttgcctgctcgcagccgccgtccgtggccgccatgttgcacggcggcggcttcagctgcggcaggtgagcttgcaccgacagaagtatgaaaccctgcatataccccaaaaaaacagagtagttttttaaaaaatcattcgcaaatagtggcggatctagaaaatcgatttgttggtgtcataacatgtctatcggtatcatagtatactaattatgtttagatcatagtgttataatatatggataagcagttttgctatagtttttgtgtaaagtcgtcggtgtcgcttgacaccagccctagttctgtagatctcacaaagttgttgttaactctgaacctgcaatcaaatatgtgcatttgtttcctcctcatttgtgaaggaaatatgattcaaatgctattaggattcttgaagataaaccatgatatatggtcagaaaatactactatttttaggtgaattacacaagttgtaggaacactacaaaaagtggctaatgtgtccagtacttagtacaggtagtacagctctgtctgggccagttgttttccctgtagcaaatgtgatgctcgtcctgcagctctatcagtttgctttacgttaaaagagataagaaagagcaatttgctctgcgaattgcgagccgcgtgtaccgtagcagccgtgtcatcgttgaattcaacctggtcccgaaaacatttaagcaatcgggaacaaaatccctggtccatgcatggtgattggcacctttttttttcaggcccatccatccatgttcatcgcctctctctctctctctttacgtgaaaacaacggtcaacaacaacaaaaaaaagtaactgtgcattccataattccatttcctttctcggtgcagcacgcacaaaaccatcatcgatcaatgtctcatgtttaaacagattgtccgtcttttcttatcagcttaaattatttaaaaaaaattctaaggacaaacagtttgattgcatgcatgagatcctcaaccctctcagctccagaacagaacacgatcgaattatccgtctttcctcgtcagctaaaaacattttttttcttctaacaacggattgtttggttgcatgtacgagactcaatatatagagttagtttgtagcggtagcttctcgcataatcataaactctaccaaacagtctagctttttgtttaaattttgagaaactgtagttatagaatctaagaaatgaactgaatacattgggaaggattgaggaggtgaatgggtgtatgtatgtatgtaccgagagctcgacgaagccgaagatgagcatggtccagaagcagccgaggtaggagtcggagaggaatccgccgaggagggagagtaggaagatggtgccgacgaagttggtcaccacgttggccgcctgcgacagcgggaagtgcatctccccgaacacgtacgttatcaggttgttccccaccgccgcgatcgccatgatctcgaacgcctggatccctgcgtgcagcacacattcgccgaatcaaaccccacatcatccattgtccaccacgcactggccatgatcaaccaatattggtccctagctcaactgctcaagcacaggagcactcacctagcacgaagacggcggcgcgcatgccgccgtggcggcgcggctcgcacggccggccgcgccagtcgacggcggcatccggcggcggcgacgacgacgcgcagctctccacatccattgccgcgaacgcgcacaagaattgcacgtcaatagctctctaagcctctctacctctgtctctctgctttcttgttgctgtctgtctagcttaggtgtggtatatggcaagttgcgacctgtgagctggaggctttatttataggctgctgctgatgctgaatccgatcgtgattatcccagcaattaattaagcccctttaattaattctgctacatgatgagcagcagcagcagcacagatcgcttctgctcttgtgaatgaactgcc
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| CDS seq | atggatgtggagagctgcgcgtcgtcgtcgccgccgccggatgccgccgtcgactggcgcggccggccgtgcgagccgcgccgccacggcggcatgcgcgccgccgtcttcgtgctagggatccaggcgttcgagatcatggcgatcgcggcggtggggaacaacctgataacgtacgtgttcggggagatgcacttcccgctgtcgcaggcggccaacgtgctgaagccgccgccgtgcaacatggcggccacggacggcggctgcgagcaggcaaggggcatcaaggcgagcatcttcttcgccgcgctctacctcgtggcgctcggcagcggctgcctcaagcccaacatgatcgcgcacggcgccgaccagttcgcggccgcggccggcggcggcggcgccgccgcggcggacaatgccaagaggctctcgacctacttcaattcggcctacttcagcttctgcgccggcgagctcgtcgcgctgacggcgctggtctgggtgcagacgcactccgggatggacgtcgggttcggcatctccgccgccgccatggcggccgggctcgtcagcctcgtctccggcgccgccttctaccggaacaagcctcctcagggcagcatcttcacgcccattgcaagggtgtttgttgccgcctacaccaagaggaagcaaatctgcccttccagctcctccgatcccgtcaatgccggCGtttgcgagccggcgcacctcgccggcggcagcttccgccacgccagcaagttcaggttcttggacaaggcgtgcatcagggcggcggagcaggggccgaacacgaagccggagagcccgtggcggctgtgcacggcggccgagGTGcggcaggccaagacgctcctcgccgtggcgcccatcttcgcgtgcaccatcgtcttcaacaccgtgctggcgcagctgcagacgttctcggtgcagcaggggagcgccatggacaccgcgctcggcggcgccggctcctcgttccgcatcccgccggcgtcgctgcaggccatcccctacgccatgctgctggcgctcgtcccggcgtacgagctcctcctcgtcccgctcatgaggcgcgccacaggggcgcggtccgggatcaccccgctccagcggatcggcgtgggcctctgcaccgtgccgctctccatggtcgccgccgccaccgtcgagcacaggcgccgcgacctgtccctgtcctccggcggcgcgccgccgcgggcgatgtccgtgctgtggatcgtgccgcagttcctcgtgttcggcgtgtcggagatgttcaccgccgtggggctcatcgagttcttctacaagcaggcgcgcggcgccggcatgcagtccttcctcacggcgctcacctactgctcctacgccttcggcttctacctcagctcggtgctcgtgtcgctcgtgaaccgtgtcacggcgagccgcggcggcggcggccatggcgggtggctcggcgacaacgacctggacaaggacaggctggacctcttctactggatgctcgccgtgctcagcgtgatcaacttcttCTgctacctgctctgcgcgaggtggtacaactccggcggcgccgacgacggctgcgacgcctccgcctccgctcaggtcgccgccgaaggcgacggcaacggcaaggagatcatctga
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| Protein seq | MDVESCASSSPPPDAAVDWRGRPCEPRRHGGMRAAVFVLGIQAFEIMAIAAVGNNLITYVFGEMHFPLSQAANVLKPPPCNMAATDGGCEQARGIKASIFFAALYLVALGSGCLKPNMIAHGADQFAAAAGGGGAAAADNAKRLSTYFNSAYFSFCAGELVALTALVWVQTHSGMDVGFGISAAAMAAGLVSLVSGAAFYRNKPPQGSIFTPIARVFVAAYTKRKQICPSSSSDPVNAGVCEPAHLAGGSFRHASKFRFLDKACIRAAEQGPNTKPESPWRLCTAAEVRQAKTLLAVAPIFACTIVFNTVLAQLQTFSVQQGSAMDTALGGAGSSFRIPPASLQAIPYAMLLALVPAYELLLVPLMRRATGARSGITPLQRIGVGLCTVPLSMVAAATVEHRRRDLSLSSGGAPPRAMSVLWIVPQFLVFGVSEMFTAVGLIEFFYKQARGAGMQSFLTALTYCSYAFGFYLSSVLVSLVNRVTASRGGGGHGGWLGDNDLDKDRLDLFYWMLAVLSVINFFCYLLCARWYNSGGADDGCDASASAQVAAEGDGNGKEII |
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| Function | Protein NRT1/ PTR FAMILY 4.4 [UniProtKB/Swiss-Prot:Q56XQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014310 | OsLima_04g0014310.01 | Chr04 | 23283404 | 23288531 | - | NAM | ||
| CDS seq | atggatgtggagagctgcgcgtcgtcgtcgccgccgccggatgccgccgtcgactggcgcggccggccgtgcgagccgcgccgccacggcggcatgcgcgccgccgtcttcgtgctagggatccaggcgttcgagatcatggcgatcgcggcggtggggaacaacctgataacgtacgtgttcggggagatgcacttcccgctgtcgcaggcggccaacgtgctgaagccgccgccgtgcaacatggcggccacggacggcggctgcgagcaggcaaggggcatcaaggcgagcatcttcttcgccgcgctctacctcgtggcgctcggcagcggctgcctcaagcccaacatgatcgcgcacggcgccgaccagttcgcggccgcggccggcggcggcggcgccgccgcggcggacaatgccaagaggctctcgacctacttcaattcggcctacttcagcttctgcgccggcgagctcgtcgcgctgacggcgctggtctgggtgcagacgcactccgggatggacgtcgggttcggcatctccgccgccgccatggcggccgggctcgtcagcctcgtctccggcgccgccttctaccggaacaagcctcctcagggcagcatcttcacgcccattgcaagggtgtttgttgccgcctacaccaagaggaagcaaatctgcccttccagctcctccgatcccgtcaatgccggCGtttgcgagccggcgcacctcgccggcggcagcttccgccacgccagcaagttcaggttcttggacaaggcgtgcatcagggcggcggagcaggggccgaacacgaagccggagagcccgtggcggctgtgcacggcggccgagGTGcggcaggccaagacgctcctcgccgtggcgcccatcttcgcgtgcaccatcgtcttcaacaccgtgctggcgcagctgcagacgttctcggtgcagcaggggagcgccatggacaccgcgctcggcggcgccggctcctcgttccgcatcccgccggcgtcgctgcaggccatcccctacgccatgctgctggcgctcgtcccggcgtacgagctcctcctcgtcccgctcatgaggcgcgccacaggggcgcggtccgggatcaccccgctccagcggatcggcgtgggcctctgcaccgtgccgctctccatggtcgccgccgccaccgtcgagcacaggcgccgcgacctgtccctgtcctccggcggcgcgccgccgcgggcgatgtccgtgctgtggatcgtgccgcagttcctcgtgttcggcgtgtcggagatgttcaccgccgtggggctcatcgagttcttctacaagcaggcgcgcggcgccggcatgcagtccttcctcacggcgctcacctactgctcctacgccttcggcttctacctcagctcggtgctcgtgtcgctcgtgaaccgtgtcacggcgagccgcggcggcggcggccatggcgggtggctcggcgacaacgacctggacaaggacaggctggacctcttctactggatgctcgccgtgctcagcgtgatcaacttcttCTgctacctgctctgcgcgaggtggtacaactccggcggcgccgacgacggctgcgacgcctccgcctccgctcaggtcgccgccgaaggcgacggcaacggcaaggagatcatctga
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| Protein seq | MDVESCASSSPPPDAAVDWRGRPCEPRRHGGMRAAVFVLGIQAFEIMAIAAVGNNLITYVFGEMHFPLSQAANVLKPPPCNMAATDGGCEQARGIKASIFFAALYLVALGSGCLKPNMIAHGADQFAAAAGGGGAAAADNAKRLSTYFNSAYFSFCAGELVALTALVWVQTHSGMDVGFGISAAAMAAGLVSLVSGAAFYRNKPPQGSIFTPIARVFVAAYTKRKQICPSSSSDPVNAGVCEPAHLAGGSFRHASKFRFLDKACIRAAEQGPNTKPESPWRLCTAAEVRQAKTLLAVAPIFACTIVFNTVLAQLQTFSVQQGSAMDTALGGAGSSFRIPPASLQAIPYAMLLALVPAYELLLVPLMRRATGARSGITPLQRIGVGLCTVPLSMVAAATVEHRRRDLSLSSGGAPPRAMSVLWIVPQFLVFGVSEMFTAVGLIEFFYKQARGAGMQSFLTALTYCSYAFGFYLSSVLVSLVNRVTASRGGGGHGGWLGDNDLDKDRLDLFYWMLAVLSVINFFCYLLCARWYNSGGADDGCDASASAQVAAEGDGNGKEII
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.076179 | 0.024209 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0441800 | RBH | 0.231526 | 0.237042 | 0.417283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36040 | RBH | 0.192596 | 0.216211 | 0.131625 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0441800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014360 | RBH | 0.0 | 0.0 | 0.649470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015200 | RBH | 0.117008 | 1.903889 | 0.890713 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014950 | RBH | 0.0 | 2.382711 | 1.147913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014520 | RBH | 0.032788 | 0.106505 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014850 | RBH | 0.607213 | 6.864435 | 3.269049 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0342900 | RBH | 3.4157285 | 12.205787 | 4.753471 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017350 | SBH | 0.000000 | 0.962984 | 0.395520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0338900 | RBH | 7.76006 | 10.5775585 | 1.5837065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022450 | SBH | 0.070777 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014090 | RBH | 0.0 | 13.877388 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014050 | RBH | 3.939351 | 7.485456 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014680 | RBH | 0.170705 | 0.943582 | 0.741873 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014890 | RBH | 0.149957 | 0.653350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013930 | RBH | 0.0 | 0.0 | 0.169788 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013960 | RBH | 0.646777 | 11.024169 | 0.721560 |
