Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013960 | OGI:04066600 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23020896-23022935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagccacatgcttcagaggagaagttcatcaggtcatctgcaatttcagcatctatactcatcctgctcatctgcatctgaatgattctcaaggtatcatgtatctcattcctgcatggatggatattatctctcgcgagaaacacatttactttcctgcctatctcaatccaactacagccaggttgcttgctaacgcctctgtgcttcatggatctcctcactctaaaaacatctgcccatttcccaagctcagcgtacatatttgagagaagaacatagggtccagagttatcaggatcaagctcaaataatttcccggctgcccattcccccatgtcaatgttcttatgcagcctgcaagcacctaatagagaagcccagagcacagcatcaggttccattggcatgttctctatgagctcctcaacttctttcagatgaccggcacgaccaagcaaatcaatcatgcaagtgtagtgatctcgggttggaattatcccatgatcctcagtcatggactgaaagtatctccgaccctccttgaccaatccagaatggccacaggcagataaaaccccaatcatggtgacagaatctgggcgttcgttgctgcaaagcattctctcaaaaagaagaagcgcatcttttgcacggccattctgtgcgtaaccaacaatcattgcattccatgatacattatctctggctgccatcctctcgaacaccttcgcaccatcactgatggaccctgtcttcaggtacatgtccacaagggagttcccaacaaagacatcagattctggtccagagtcaaagcggaagccttctttcaggacatgtacatgagcttgctgaccaagctgaaggttagcaagattggcacacgcattcagaacatttccatacgtgtaatgtgttggccaaactgactctcttttcagcctgacaaagagcctaagcgcttcttcttcctcactattatgtgcatatgttgcaatgagcacattccaagcaacgacattcttctccaccatctgcaagaacacggcctgagcatctcccacatttgcagactttgcatacccagttatcattgacgtttctgagacaacactcctgatagccatgcgatcaaatacacacttcgcctcccaagtcctcccacacttggcatacatgtccacgagagcattgttcaacaccatgtcctccctaaacctatcagacttcaccatacgggtatggacctggcggccttctctacccgcagcaaggcctgcacatgcgctcatgacgcttgcaagtgtcacctcatcaggcacaaaaccatctttcatcatcctgacgaagagcgcgagggcctcatcgacagggccattctgctcatagcaagtgatcaggctgttccaggaaacaatattccgctccggcattgcatcgaacaccttctgtgcctcctccggccgctcacacttcgcgtacatgtccacaagcgcggtaccgatgtacacatcgctcccgtgagacgacttggtgacaagggcgtgcacctgctccccggtcctcgaagccttctccgaggcgcaggcgctcagcgcgctggcgaaggagtaggcgttgagcacgaagtcgtcggcgtgcatggcggccaggaagcggagcgcgtcgccgccgcggccgtgctgcgcgagcgccgcgacgaccgcgttgtaggagcactggtcggggtccgggatggcgccgaagagcgcgagggcgtcgtcggcgcggcccaggcgcgcgcacgcggagaggagcgcgttgtaggagaaggtgttgcggtggggcatcccgtcgaACaccctgcgggcgtcgtggagggagcccagccgcgcgtacgcggagaggagggtgttgaggaggaaggtctcgccggcgaagggggacctgagggcgcgcgcgtgcgcggcgcgggcggcgcggaggccgggagccgagcggaggaggtcggcgagcggcgcggacgctcggaggtgggagacgaggtggatgccggt
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| CDS seq | atgccccaccgcaacaccttctcctacaacgcgctcctctccgcgtgcgcgcgcctgggccgcgccgacgacgccctcgcgctcttcggcgccatcccggaccccgaccagtgctcctacaacgcggtcgtcgcggcgctcgcgcagcacggccgcggcggcgacgcgctccgcttcctggccgccatgcacgccgacgacttcgtgctcaacgcctactccttcgccagcgcgctgagcgcctgcgcctcggagaaggcttcgaggaccggggagcaggtgcacgcccttgtcaccaagtcgtctcacgggagcgatgtgtacatcggtaccgcgcttgtggacatgtacgcgaagtgtgagcggccggaggaggcacagaaggtgttcgatgcaatgccggagcggaatattgtttcctggaacagcctgatcacttgctatgagcagaatggccctgtcgatgaggccctcgcgctcttcgtcaggatgatgaaagatggttttgtgcctgatgaggtgacacttgcaagcgtcatgagcgcatgtgcaggccttgctgcgggtagagaaggccgccaggtccatacccgtatggtgaagtctgataggtttagggaggacatggtgttgaacaatgctctcgtggacatgtatgccaagtgtgggaggacttgggaggcgaagtgtgtatttgatcgcatggctatcaggagtgttgtctcagaaacgtcaatgataactgggtatgcaaagtctgcaaatgtgggagatgctcaggccgtgttcttgcagatggtggagaagaatgtcgttgcttggaatgtgctcattgcaacatatgcacataatagtgaggaagaagaagcgcttaggctctttgtcaggctgaaaagagagtcagtttggccaacacattacacgtatggaaatgttctgaatgcgtgtgccaatcttgctaaccttcagcttggtcagcaagctcatgtacatgtcctgaaagaaggcttccgctttgactctggaccagaatctgatgtctttgttgggaactcccttgtggacatgtacctgaagacagggtccatcagtgatggtgcgaaggtgttcgagaggatggcagccagagataatgtatcatggaatgcaatgattgttggttacgcacagaatggccgtgcaaaagatgcgcttcttctttttgagagaatgctttgcagcaacgaacgcccagattctgtcaccatgattggggttttatctgcctgtggccattctggattggtcaaggagggtcggagatactttcagtccatgactgaggatcatgggataattccaacccgagatcactacacttgcatgattgatttgcttggtcgtgccggtcatctgaaagaagttgaggagctcatagagaacatgccaatggaacctgatgctatgagcaggatgagtatagatgctgaaattgcagatgacctgatgaacttctcctctgaagcatgtggctag
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| Protein seq | MPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAMSRMSIDAEIADDLMNFSSEACG |
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| Function | Pentatricopeptide repeat-containing protein At2g13600 [UniProtKB/Swiss-Prot:Q9SIT7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013960 | OsLima_04g0013960.01 | Chr04 | 23020896 | 23022935 | - | NAM | ||
| CDS seq | atgccccaccgcaacaccttctcctacaacgcgctcctctccgcgtgcgcgcgcctgggccgcgccgacgacgccctcgcgctcttcggcgccatcccggaccccgaccagtgctcctacaacgcggtcgtcgcggcgctcgcgcagcacggccgcggcggcgacgcgctccgcttcctggccgccatgcacgccgacgacttcgtgctcaacgcctactccttcgccagcgcgctgagcgcctgcgcctcggagaaggcttcgaggaccggggagcaggtgcacgcccttgtcaccaagtcgtctcacgggagcgatgtgtacatcggtaccgcgcttgtggacatgtacgcgaagtgtgagcggccggaggaggcacagaaggtgttcgatgcaatgccggagcggaatattgtttcctggaacagcctgatcacttgctatgagcagaatggccctgtcgatgaggccctcgcgctcttcgtcaggatgatgaaagatggttttgtgcctgatgaggtgacacttgcaagcgtcatgagcgcatgtgcaggccttgctgcgggtagagaaggccgccaggtccatacccgtatggtgaagtctgataggtttagggaggacatggtgttgaacaatgctctcgtggacatgtatgccaagtgtgggaggacttgggaggcgaagtgtgtatttgatcgcatggctatcaggagtgttgtctcagaaacgtcaatgataactgggtatgcaaagtctgcaaatgtgggagatgctcaggccgtgttcttgcagatggtggagaagaatgtcgttgcttggaatgtgctcattgcaacatatgcacataatagtgaggaagaagaagcgcttaggctctttgtcaggctgaaaagagagtcagtttggccaacacattacacgtatggaaatgttctgaatgcgtgtgccaatcttgctaaccttcagcttggtcagcaagctcatgtacatgtcctgaaagaaggcttccgctttgactctggaccagaatctgatgtctttgttgggaactcccttgtggacatgtacctgaagacagggtccatcagtgatggtgcgaaggtgttcgagaggatggcagccagagataatgtatcatggaatgcaatgattgttggttacgcacagaatggccgtgcaaaagatgcgcttcttctttttgagagaatgctttgcagcaacgaacgcccagattctgtcaccatgattggggttttatctgcctgtggccattctggattggtcaaggagggtcggagatactttcagtccatgactgaggatcatgggataattccaacccgagatcactacacttgcatgattgatttgcttggtcgtgccggtcatctgaaagaagttgaggagctcatagagaacatgccaatggaacctgatgctatgagcaggatgagtatagatgctgaaattgcagatgacctgatgaacttctcctctgaagcatgtggctag
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| Protein seq | MPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAMSRMSIDAEIADDLMNFSSEACG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048109 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0514500 | SBH | 0.389683 | 0.577427 | 0.388083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35610 | RBH | 0.396874 | 0.490416 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0514500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014000 | RBH | 0.000000 | 0.0 | 0.736594 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014850 | RBH | 0.0 | 0.624508 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014600 | RBH | 0.500322 | 0.000000 | 2.871174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014180 | RBH | 0.057767 | 0.047782 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014500 | RBH | 2.409532 | 2.005277 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0339500 | RBH | 1.255908 | 2.3454185 | 0.9769725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013420 | RBH | 0.0 | 0.000000 | 0.109479 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0403000 | SBH | 4.1095115 | 5.483726 | 5.339249 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019750 | RBH | 0.265523 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013740 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014330 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014530 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013590 | RBH | 0.0 | 0.496333 | 0.297022 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013610 | RBH | 0.0 | 2.295610 | 0.116378 |
