Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_04g0014600 OGI:04066600 | 15/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr04:21553863-21562350
Gene Symbol -
DNA seq

ctagccacatgcttcagaggagaagttcatcaggtcatctgcaatttcagcatctatactcatcctgctcatctgcatctgaatgattctcaaggtatcatgtatctcattcctgcatggatggatattatctctcgcgagaaacacatttactttcctgcctatctcaatccaactacagccaggttgcttgctaacgcctctgtgcttcatggatctcctcactctaaaaacatctgcccatttcccaagctcagcgtacatatttgagagaagaacatagggtccagagttatcaggatcaagctcaaataatttcccggctgcccattcccccatgtcaatgttcttatgcagcctgcaagcacctaatagagaagcccagagcacagcatcaggttccattggcatgttctctatgagctcctcaacttctttcagatgaccggcacgaccaagcaaatcaatcatgcaagtgtagtgatctcgggttggaattatcccatgatcctcagtcatggactgaaagtatctccgaccctccttgaccaatccagaatggccacaggcagataaaaccccaatcatggtgacagaatctgggcgttcgttgctgcaaagcattctctcaaaaagaagaagcgcatcttttgcacggccattctgtgcgtaaccaacaatcattgcattccatgatacattatctctggctgccatcctctcgaacaccttcgcaccatcactgatggaccctgtcttcaggtacatgtccacaagggagttcccaacaaagacatcagattctggtccagagtcaaagcggaagccttctttcaggacatgtacatgagcttgctgaccaagctgaaggttagcaagattggcacacgcattcagaacatttccatacgtgtaatgtgttggccaaactgactctcttttcagcctgacaaagagcctaagcgcttcttcttcctcactattatgtgcatatgttgcaatgagcacattccaagcaacgacattcttctccaccatctgcaagaacacggcctgagcatctcccacatttgcagactttgcatacccagttatcattgacgtttctgagacaacactcctgatagccatgcgatcaaatacacacttcgcctcccaagtcctcccacacttggcatacatgtccacgagagcattgttcaacaccatgtcctccctaaacctatcagacttcaccatgcgggtatggacctggcggccttctctacccgcagcaaggcctgcacatgcgctcatgacgcttgcaagtgtcacctcatcaggcacaaaaccatctttcatcatcctgacgaagagcgcgagggcctcatcgacagggccattctgctcatagcaagtgatcaggctgttccaggaaacaatattccgctccggcattgcatcgaacaccttctgtgcctcctccggccgctcacacttcgcgtacatgtccacaagcgcggtaccgatgtacacatcgctcccgtgagacgacttggtgacaagggcgtgcacctgctccccggtcctcgaagccttctccgaggcgcaggcgctcagcgcgctggcgaaggagtaggcgttgagcacgaagtcgtcggcgtgcatggcggccaggaagcggagcgcgtcgccgccgcggccgtgctgcgcgagcgccgcgacgaccgcgttgtaggagcactggtcggggtccgggatggcgccgaagagcgcgagggcgtcgtcggcgcggcccaggcgcgcgcacgcggagaggagcgcgttgtaggagaaggtgttgcggtggggcatcccgtcgaacaccctgcgggcgtcgtggagggagcccagccgcgcgtacgcggagaggagggtgttgaggaggaaggtctcgccggcgaagggggacctgagggcgcgcgcgtgcgcggcgcgggcggcgcggaggccgggagccgagcggaggaggtcggcgagcggcgcggacgctcggaggtgggagacgaggtggatgccggtgtgatgcggacgcgccatgccaggagaaggcgctgggggcgctgggcgcgtttgatatattccgtttacttttttaaacatgtttgaccgttcgtcttgttcaaaaacttttatgaaatatttaaaattatatgtatacataaaagtatatttaacaatgaatcatatgataggaaaagaattaataagcgaagcactgcagtttaagctaccgtttcagtttaaaatttgattcaaatttcaagcttatcagttcattcaaatttcaagcctatcagttcacatttcacggttcagataggagctcagatttcttaaggtttcagcctatcctcttttcatgttgaaattcttctatttctgttggtgagatctgagatgtattattagtgttgagggtgtatttagttctttgggtgtaaagttgttgaagaatacaaacacacatttgaagtattaaacatagactaataacaaaacaaattacagattccgcatgtaaactgtgagatgaatttattaagcataattagtctgtcgttggcaaatatttactgtagcataatattgtcaaatcatggcgtaattatgctcaaaagattcgtctcgcaatttacatgcaaactgtgtaattgtttttttcccccacatttaatgctccatacatgtgtccaaacatttgatgtgacgtttgagatctaaacaaggcctcacacaagaaatcaattactttgtagatcgtaactagctgccctagctagtcatcgcctgccgtggacatggcaaagcgttcgcccgaatatgtccattgtgaagttgctatacgaggttgatccaggcaccaacgatttgcccgtctattgtcacccagtcaacgcctattgctgctggttgttcatgccattcatcaacctgcaagtaaagtaaaaataagctgatggagaggagcataaaggaaaatataaaccgtggggaatggactaatcaggcaaatgctatggtaccccttcatacggattgggatcctctgacgtgaagtcagagggacgtggtggctgacatgtgggccccaccgcttgcgggcccacctgccagtgaccacgtcatgtggcagttcacgtcagaggaaccacttccccttcatacatatttgagctgactgacatgattatttgtgcgtatgggtggttcagtaagagtttctaactaaggtttaccttaccattttggaagtgaaaactgctccccacctgtttgctgagaaccgagtggaaaacagtaaaaaccggcgacgttcagtcaactctgtacgaaaaccagctaaaatctatcagtttctacaaactaaccaccagcggtttcacaaaaaccgagctcaattttgttaaccctgttctaacacaatggataatttggataatagaataagaactgaaatgagttccctcaagaacaatgcgtggatgagaacacccacgccaggactggactgagaatcctttctaggccataatcattgttctcattcaatcgcaacatgaccgcattgccataatctaattgaagtctggccctcggattgtgttcttaaagggtttgtaatgaagcaagaaacttgtaaatacaaggtagttatatacttaccaaacccctaacaggttggcaatcctcaaaacatctgagcctcttgaactgcatttctcagttctgacaaacaccgttctgataccatcttttcttgttcaccactaagacagcagctggccaccctatataaaggaaacatcagtaaccattcttaaaacgtgctcgtagtaagctggaacatagattcattccaccaaatataagaaaatattcaagaccaacacaaaaaaaaagcaggattatttgtgataaataagtgcatcccaaattgcaattcctgttttagatagacatcagctgcaaataattatttttccctgcgcatcagcatactaaataacatcttgtggacttgttatcaattcaaaattaagagtatggcttcagttcatgaatcccaacagtacgctgctcaattggtaaatgttacagctggcacaagcattatgcagcacacagtgaacaaaatgtatttgaaacgtatgttagaattcttattaataacaaaaccccccttccaagagaacatatgtactggtaaaaaatacccaaaatgaaatactgtggttctaaggaacaagtcaaaagaggatggaagggcatagaaacaaacattgataccagtcctacatactgtataccgacaatcattgacacacaagacatgctttatgccagtaaagttctagctggattcagtaaatatctattgttaagaaagaaaaagactgagtaaaatttcggcgtacctttcatattcctgttgagcacgatgtgcagggtttagcaaaacacgatcattctcaaccagatttcttcgcgtttgcaccaaattaatagcttttgataaatcctctagtagacataagagcaatgtatcaacaattaaatcaagagaacacgtagttggttgggttggacattagatggcttggaactatactatcgaatattaattagccattgctggcattacacctgttaaaaggtgtatctatgtgtagtgctatgtatgtacaagggaaaactagcctataatgccttctggtccagtcgctcttttcagttcaggcacctgatcaagctgcggatccagtcaccagtttggtcagatttattaacagttgggagtgggtgctgactcatggatatttgaacagtctactcttgataattgctgcctcgttttgccatcaaatgatacccagatgtgacttcttgcatcatctggtatctgtggaagttgcaaatgtaatggcagttccaaaagaatgtgcaaattttaccagttagctaaccaagttgtggtattgtgggttaaaaacaggagctaaagctgctactagagtctgagttacatagtcatagtaaacattattaattaaggatgataataaaggttgcgtgaaaacataaacattttatcggctgttgaatgttgattgctccataccttcaattcaagtcgtgcagaaatcaggaaggatgacaagtctaaatgacaatgagtgcgggcagattggagtaaacagcaaacatgggacatttggatggacctagataacaaaagcaacaatgataatagtgaataactgtcctgttcaattggcactgggtagcgtgcttggaaaagaaacatttccatggcagatatgaaaatactgcaagcaaagatcgcaacaaagggccaacacacgccgatttgcacgcgttcggcttgccttgctcgagtggccgactggattttattgcccttgccacgtgcccaccaatcagttgtagctttatttctctaaccattaggcattggcagtttggcacagaagaataaggtttcattttctaagatcacaagttctggatattaccctattaggtgatacataattagttgatgttttcctcaaaacaaaattggttggtgcttcaggaagcagtcaaggacatcgcacacgagtaaatttatcaagggtcatgcacttgataaatcaaaattggttggtcctaagtgtgaccttttctttggtctactgattataatcttctcgtacatgctaaatttcatgttatatgccttgaagagactctatatatatatacaaaactgaaaatcatcttaaaggatcacaactgaatttacatcatcaaatccagcgattgcaactgaatttacatgaaatccaatccattaaagaaataaatgaatctgagtaattctctggacagtacactatgtgctcacagtaatctttaaaagcttctaaaatcctcaatacatcaagttgaaattttgcataaataaatactgttctctaagaaacaggaatgaataataagaaatgtcgcagtagcatacgaggcaactgtggaggtgcaattggccgtgccaagaaaatgtagaaatgtgctatcggttgcaacttagtgaacaaatcttggagaagaccaatagtttattcgttcagacaaaaatgacagttttaaattctatactgagcaatggaattttatacaaaaccatatgcctttgaagcatgaaaaaagggtttactcctatgaccaccaagaaaaaggcaacagcaaatgagattgcaattttatactgatcaataggattttagtactgacctgcctatatgaatcactacagcctttgttcacttggtaaaagagttcacaattcaatttaatctgctttggtcactactcatattggagcactgttccacgtcacaatcctgggtattttgactcttaggtaataggcctaaacatAaaaaagattgcacttatcttccctgaacaactaaaggactctcttctagtgaactaatctatcaccaggagttgttgagctctaggttcaacaggttaaaaatacttccctcaagcacatagataaacaacaatctaagcaacagagcacatgtcagaacatatacagctagttgacccaacagagcgcattcctaatatctgaccatgtaccgacttggctactctcaggaatcgcatgggaatgattagaagaaaccactgtatacaactatgatatgaagtatatgaactgttcatacctagaactctgcattgcaacaagatttgcctaaccgaactgatccatggaagcaaacctgaaaaatgtatcaagcttaaccaatgtaaacaaagaaaaaaatcaaaggggatgctcatcacctgggataacaccggatagaatataacctgctcacggccatcaagaaagaatgtcgacggcagtggcatgcatgccaggagatacttaacgatcttctccaccgagcaacagcacaacccaagtcatattaacatgtcgcatgaatctggcgaaaccattgaatgaagagcaccctgagttaaatcttaacaagagggaaatatatcaggtacaaataaaggttttatcctaatgaaattatgttgctaggctatcaagaaaaataaattgtatttaccattagcttccaggtgttgatgatccatcaatatgacctgtttttttctctccagataagggataccgttcctttcagcagatttttgtgatccaagctgagaattgcctttagaattgctggcatcagatgtcctaggatcaactgttgcccctgaagcttcgatttacctttcctcaacagatgtggtggctccattgctggatggttttccattagtaataccagaagcaactgatagaatataatcactatcgaaggatgccccaacttttcaagaccataaaatctcagctgctttatagtcaatggctcattttgttcagcgctgagactctgttttgtccttaagtggtcagtaaactactcgaccgtcactgaggggtcagaacagattttgaatatactcctttgcttctaaaaatgtcaggcatcccatttgtttggggaaaacatctcaagaaggaaactgtgcctcaaggggattactctctagactaaagtttgactgaagttctgtcttggtgccatgcagttcaccttgctcagtacttttggatacacttctatgccacatccagattatgcagtgctgcttcaatgtctatgtaacatgtttccctcaccttcactgttccatcagattacagaagtgctgtttttgctaccttctgaggagaaacctgggctgtttgtgagctcatctgtagagtactatcaaactgttctactaaatgcgcccccccccaaagacccagagtcccaaacaatctctcggtgaacaagcataagtcgtcagccatatgtagcagaaattgataactacaaatcaagaaccaccccgcaggcagcgcgccaaggaccactccgcagatgttcgacgaaatgctcacaagctgcaggcgatcgaaccaacgaacctggcagtcgagcccgatccgcgaggggaagaacgacgcccacgcggcgaagacaccatgccgcgcgccgccgccacctcccggcgacccatgaggcgcacgaagggaaggagaagaacgcggtggcgacggggaaggggacggagttggccgcgacggcgtagacgagtgaggccgtgacgcggaggggatcgggaggcggcgcggcgcttccgcctcaactccgagcgcctaagccacagccgccgccccaccacgctcgagcgctggccctactcgccgccgcatccactcggactcgccgtagcagccgccacctcggccgccccgccaccgccggcagcaacgccgccgcggcgactgaacggggagaggggaatccacacgtcacacgccacacgcctc

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CDS seq

atgaaagcgtccgcgccgctcgccgacctcctccgctcggctcccggcctccgcgccgcccgcgccgcgcacgcgcgcgccctcaggtcccccttcgccggcgagaccttcctcctcaacaccctcctctccgcgtacgcgcggctgggctccctccacgacgcccgcagggtgttcgacgggatgccccaccgcaacaccttctcctacaacgcgctcctctccgcgtgcgcgcgcctgggccgcgccgacgacgccctcgcgctcttcggcgccatcccggaccccgaccagtgctcctacaacgcggtcgtcgcggcgctcgcgcagcacggccgcggcggcgacgcgctccgcttcctggccgccatgcacgccgacgacttcgtgctcaacgcctactccttcgccagcgcgctgagcgcctgcgcctcggagaaggcttcgaggaccggggagcaggtgcacgcccttgtcaccaagtcgtctcacgggagcgatgtgtacatcggtaccgcgcttgtggacatgtacgcgaagtgtgagcggccggaggaggcacagaaggtgttcgatgcaatgccggagcggaatattgtttcctggaacagcctgatcacttgctatgagcagaatggccctgtcgatgaggccctcgcgctcttcgtcaggatgatgaaagatggttttgtgcctgatgaggtgacacttgcaagcgtcatgagcgcatgtgcaggccttgctgcgggtagagaaggccgccaggtccatacccgcatggtgaagtctgataggtttagggaggacatggtgttgaacaatgctctcgtggacatgtatgccaagtgtgggaggacttgggaggcgaagtgtgtatttgatcgcatggctatcaggagtgttgtctcagaaacgtcaatgataactgggtatgcaaagtctgcaaatgtgggagatgctcaggccgtgttcttgcagatggtggagaagaatgtcgttgcttggaatgtgctcattgcaacatatgcacataatagtgaggaagaagaagcgcttaggctctttgtcaggctgaaaagagagtcagtttggccaacacattacacgtatggaaatgttctgaatgcgtgtgccaatcttgctaaccttcagcttggtcagcaagctcatgtacatgtcctgaaagaaggcttccgctttgactctggaccagaatctgatgtctttgttgggaactcccttgtggacatgtacctgaagacagggtccatcagtgatggtgcgaaggtgttcgagaggatggcagccagagataatgtatcatggaatgcaatgattgttggttacgcacagaatggccgtgcaaaagatgcgcttcttctttttgagagaatgctttgcagcaacgaacgcccagattctgtcaccatgattggggttttatctgcctgtggccattctggattggtcaaggagggtcggagatactttcagtccatgactgaggatcatgggataattccaacccgagatcactacacttgcatgattgatttgcttggtcgtgccggtcatctgaaagaagttgaggagctcatagagaacatgccaatggaacctgatgctatgcagatgagcaggatgagtatagatgctgaaattgcagatgacctgatgaacttctcctctgaagcatgtggctag

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Protein seq

MKASAPLADLLRSAPGLRAARAAHARALRSPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAMQMSRMSIDAEIADDLMNFSSEACG

Function Pentatricopeptide repeat-containing protein At2g13600 [UniProtKB/Swiss-Prot:Q9SIT7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_04g0014600 OsCMeo_04g0014600.01 Chr04 21553863 21562350 - NAM
CDS seq

atgaaagcgtccgcgccgctcgccgacctcctccgctcggctcccggcctccgcgccgcccgcgccgcgcacgcgcgcgccctcaggtcccccttcgccggcgagaccttcctcctcaacaccctcctctccgcgtacgcgcggctgggctccctccacgacgcccgcagggtgttcgacgggatgccccaccgcaacaccttctcctacaacgcgctcctctccgcgtgcgcgcgcctgggccgcgccgacgacgccctcgcgctcttcggcgccatcccggaccccgaccagtgctcctacaacgcggtcgtcgcggcgctcgcgcagcacggccgcggcggcgacgcgctccgcttcctggccgccatgcacgccgacgacttcgtgctcaacgcctactccttcgccagcgcgctgagcgcctgcgcctcggagaaggcttcgaggaccggggagcaggtgcacgcccttgtcaccaagtcgtctcacgggagcgatgtgtacatcggtaccgcgcttgtggacatgtacgcgaagtgtgagcggccggaggaggcacagaaggtgttcgatgcaatgccggagcggaatattgtttcctggaacagcctgatcacttgctatgagcagaatggccctgtcgatgaggccctcgcgctcttcgtcaggatgatgaaagatggttttgtgcctgatgaggtgacacttgcaagcgtcatgagcgcatgtgcaggccttgctgcgggtagagaaggccgccaggtccatacccgcatggtgaagtctgataggtttagggaggacatggtgttgaacaatgctctcgtggacatgtatgccaagtgtgggaggacttgggaggcgaagtgtgtatttgatcgcatggctatcaggagtgttgtctcagaaacgtcaatgataactgggtatgcaaagtctgcaaatgtgggagatgctcaggccgtgttcttgcagatggtggagaagaatgtcgttgcttggaatgtgctcattgcaacatatgcacataatagtgaggaagaagaagcgcttaggctctttgtcaggctgaaaagagagtcagtttggccaacacattacacgtatggaaatgttctgaatgcgtgtgccaatcttgctaaccttcagcttggtcagcaagctcatgtacatgtcctgaaagaaggcttccgctttgactctggaccagaatctgatgtctttgttgggaactcccttgtggacatgtacctgaagacagggtccatcagtgatggtgcgaaggtgttcgagaggatggcagccagagataatgtatcatggaatgcaatgattgttggttacgcacagaatggccgtgcaaaagatgcgcttcttctttttgagagaatgctttgcagcaacgaacgcccagattctgtcaccatgattggggttttatctgcctgtggccattctggattggtcaaggagggtcggagatactttcagtccatgactgaggatcatgggataattccaacccgagatcactacacttgcatgattgatttgcttggtcgtgccggtcatctgaaagaagttgaggagctcatagagaacatgccaatggaacctgatgctatgcagatgagcaggatgagtatagatgctgaaattgcagatgacctgatgaacttctcctctgaagcatgtggctag

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Protein seq

MKASAPLADLLRSAPGLRAARAAHARALRSPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAMQMSRMSIDAEIADDLMNFSSEACG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.500322 0.000000 2.871174

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0514500 SBH 0.389683 0.577427 0.388083
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g35610 RBH 0.396874 0.490416 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0514500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0014000 RBH 0.000000 0.0 0.736594
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0014850 RBH 0.0 0.624508 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0021130 RBH 0.440414 0.0 0.877415
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0014180 RBH 0.057767 0.047782 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0014500 RBH 2.409532 2.005277 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0339500 RBH 1.255908 2.3454185 0.9769725
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0013420 RBH 0.0 0.000000 0.109479
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0403000 SBH 4.1095115 5.483726 5.339249
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0013960 RBH 0.048109 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0013740 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0013710 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0014330 RBH 0.0 0.000000 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0014530 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G013590 RBH 0.0 0.496333 0.297022
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0013610 RBH 0.0 2.295610 0.116378
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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