Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013670 | OGI:04066020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22755549-22762482 | ||||||||
| Gene Symbol | SAPK7, OsSAPK7, OsSnRK2.7, SnRK2.7 | ||||||||||
| DNA seq | catccccctgctgctgctgctgctgcttcgctgagacgacgagaggaagaagacgagcccccaagccaagcagacgcctcctccttcttaagcttcccaattctttctctttccctcctcctccgcctccgcctacgccttccccgctagtcccacacatccggcgaagattccggaagtttcgtcgatcctccgatcgatcaagcggcgagcggcgggaggcatggagaggtacgagctgctcaaggacatcggcgccgggaacttcggggtggcgcggctgatgcggaacaaggagaccaaggagctggtcgccatgaagtacatccctcggggcctcaaggcgagccttcttcgCTTcttcttcttcttcttcttcttcttgtcccttttcgtgcgctctgttttcctgatcgatcgatgggtgtggggcgttttttttgctcattcgggtggtgatctgatctctgcagattgacgagaatgtggcgagggagatcatcaaccaccggtcgctgcggcaccccaacatcatccgcttcaaggaggtgaggccgtggcggggggcaaattgggtgttcgcccctgttcgtcgcgtcggtggcgaagaatctgtttgTTttttttttctttttgtgtgtgtgtgtgatggaagaatcgtgccttgcgatgcaggtggtggtcacgccgacgcacctggcgatcgtgatggagtacgctgccggcggcgagttgttcgaccggatctgcaacgccgggaggttcagcgaggacgaggttcagcgatgctcgaatcgactctaatcaactccatttcttggtgagttcttgtgctaatccgcgtgagaatggtgggcttttgcaggccaggtatttcttccagcagctcatctgcggcgtgagctactgccacttcatggtaagaacagaaaaacgatcccagtaaacattgcattctttttttaaaaaaaaaaaggatgggaaagtgttcaaatgtgaaattattattcgtgatggattcgcagcaaatttgccaccgggatttgaagctggagaacacgctgctggacggcagcccggcgccccgcctcaagatctgcgacttcggttactccaaggtagggagaaggccttctttaaccttttcttgaatacagtaatcttttccctcgaaacctgcctcaACacctcttttccctgcccggatttcttctagaaatggacaagcttttcttttttcccttgtccaaaggcactccatttttaaatgatctatagtcgatttaatatttgatcttacctgttatatatacattttaatatatgctgctacagctaactataaatttatagcggttacTtttctcTtttatcatttatcttcggtttatagttacctagtctcaaaagatcaaaactttttcttcactgtttcaattcactcccccaagaaacgccattgcttgcaaacgttttcttctacaaatgctaaaaaaaaaaaaactcctatgtgctttcttgcctaattttctcccccttttcttacgcgcaactgcctaaaagaagcaacattttcgctttgatcgcaacatgacgccttttttgtttcttctcctcgtcgcagtcgtcgctgctgcactcgaagcccaagtcgacggtcgggacgccggcgtacatcgcgccggaggtgctatcccgccGggagtacgacggcaaggtcagtcacgcccattcgcccattacttccccttgtcatctgtggcatggtggtggggcccactggcagtggcggtagcgtggggcccacctgctcctggtcctcagcgccgagcacgtgccgtcccctgggagtccacgtatcgcggttctcaaggcaaacacgaccttggaccgtagacccggcctatgggcgagctgggcagcgtcggaaagtgggtcccatgtgtctgtgagtgttgggtctatgggctactatgggctagggtccatgggggggggggggacaggtgcctctgggtggtggatttgggatttgtcctctaggagagcggtggagatttgcttgcctgcggccggacagacgcccactGggctgtgggcccgggattgttcttagcccgggcccacacactgcctcgtgattcgtgacagtagtagtactagtacatgctagacagtgtgtagtagtacgcgctaaacaggctgtgtgaaggggccctgagaccatatgctgctgactgtcactctcagttcagctgagtgtgttttgctcaaaaaaaatagaagaagaagaagaagaagcttgaGTgtgtgtttcttgctgcagctgagctgagctgctactgtagtgcattagattcccagctaatgatgctccctccagtagtggtagtagaactccagtgttttttgttgaaaaatctcttctgtaaaagcaagggagggattattcaaaaggacaggttccttccttTGtgtgtgtgtgtgatgtcgatctagacattcacattctctctcggtttttttttcggtaatcaactaatcacacatcacgcttgatggggatgctcgcttcgacgaggcgtggcggctgctttaacagcacgccagacacaaaagaggaggggggagaaaagacgggttgatcgaattcgagacggttttagtggtcaagagtttgcaccctgtagcttgttacgtgcccccacttgttgctttattaaaactagcatggtggcccgcgcagattgcgcggctagcatcattatattttctctcagataatagtatatatgttttctcattatattattcaaatatattaaaatgacaacataattttaaattttgcaataactttacaaaactactaatgtgtaatattcatattatattttatatatgtgttagttattaattatttttaatattaaattttagttatttataaatTAtatatattcctatatggactctagactcgtcttttaatatttctttttttaattccgaaatttttgtaaattgtatttctatatagactctatgctcttcttccaatattaTttatttttatttctgaatttttattatttctaattgtatttctatgtggactctaaattcatcttttaatattctttaatttttaatttcgaatttcagttacttctaaattgtattctatattgaccttaaactcttcttcacatgtttttcttaatttcgaattttagttatttgtaaattgtatttttatacgaactctaaactctacttttaattttattatgtttattccaaattttagttaattttaaattcctatatggactctatactctacttctaatatttcttatttttaattccgaatttctattttttttcttaattgtatttctatatggactctatactctacttctaatattccttatttttaattttaaatttatattatttcctaattatatttctatatggactctatactctacttctaatattccatatttttaattctaaatttcagttatttcctaattgtatttcaatatggactctatactctatttctaatattcattatttttaaattccaaatttcagttatttcctaattgtatttctatatggactctatattctacttctaatattccttatttttaatttcgattttcagttatttcataattgtatttctatattaactctatactcgacttctaatattccttatttttaattccgaatttcaactatttcctaattgtatttctatatggactctagtcttctcttctaatattccTtattttttaattccgaatttcagttatttcttaattgtatttctatatggactctccttatttttaattccgaatttcaactaTttcctaattgtatttctatatggactctagtcttctcttctaatattccttattttttaattccgaatttcagttatttcttaattgtatttctatatggactctagtctcctcttctaatatttcttattttttaattccgaatttcaactatttctaaattgtatttctatatggactctagtctcctcttctaatatttcttatttttttaatttcgaatttcagctatttactaattgtatttctatatggactctgccttttctttttctccgattaatgtgagaatttctagaccatgagagcgaacgtggaggctcctttttctatttctttaataatataatagatgtggtggcctgaggtaaagtgagattagccggtgatggcatgagattctccagggtacagatgcgagatattttgcttctcgcccgatttgggcggggttaaaagttcggattctttgtatgtttggttgtccagtgtgttttggcgagtgaagtaacggagtgtgattttgtctttagttacatgcaacgctaagaaaggaatgatttttcatcgtttgggattgaaatggaacagacgtgtagggattaggtgaattgtgacaggatccatgaggtagacgcacccctcagtctgtatttgcagttatgcatgtcattcggttggacagcttgcaatttttgttgacatctttttgggttcacctcatactttatgtccttttctgagcttttttttccatcatggttctagtgctacatattagctaattgacgttatcacaatgggccctcggacccaatccttttcaggtagacatgttagactgaacttctctttggccttttctgtggttattaattttctctctctccttggtgtcagttactgccgtcatatcttatgaacgattttcttcaggacagtgattgcattttgttccttccctatataatacatctactcaggctgcttagatttttcacgctgcaaaattggttgcttttgattgacaaagtggacactgccatagataatttgtagatggaatatcaagaaacattttatcatttgcatctagatgttccTtttttacaaccataatgtgcccttgatttcaacaacctataatgcttatttccgagttatagagttatgtatttttcagctgatttgttcccgtcatctttagactgccctcaaccacctgttttttatttgaattaatgctggaataatctattgcataaagAaaaaaaaccactgttgtaccgctttccaaaagattactggatgcgtatgtcctataacagtcatggttgttagcctacttagccattaggtgagaaagcacaaagtgccccacagcaggtaaatgtctgtggggggaatatgtaattaccgaaggacatggatcctctgagatcatcttttctatgttctcatgataacgccaccaccctaataacgaatgtcaatacttatgcttaccataggtgtgttctgtcattacctgtttttatctttgctttagtacataagcgtagcactgatgcttgtctgccttttgaatttaggttcatggaagtgcacgtcatctttcctatcattcagtttattttgtacagaagttagcatccattgtgaacatagctgaaatttgcgtacttcggagagTtttgatatttccacgcttctatttggaactttgagcgtactaaacataagtgacagcatgctgtgcagaaaataaaaggagccaatcaaatagatgtgctaaatagtgtaatagagcctttgaTttttgtttcttggaccattttaaattacagagattattctgaaatgttttgatgatcgaaacaagcacgattaatgttctacaggctgttctgccttaatattctactagaaagaagtgtactttcatacatcctgttcttgcttgtatttatcctttcatttgtttctatcttatctcctgaattcatttacttgtctcctaacatttttggattggatggttgatgcttcagacagccgatgtgtggtcttgtggagtgactctttatgtgatgcttgttggtgcttacccctttgaggaccctgatgaccccaagaatttcagaaagaccattggggtaacaatttaagaacttttcagctaagcattatcagatcacaacttctagtctcttatgctttgtgcattttttgttctcagagaataatgtcaattcagtacaaaatacccgagtacgtccatgtatcccaggactgcaggcaactcctttctagaatttttgttgcaaaccctgcaaaggtactactctatttaaactcagatcaacttactagacctattcatgattttttttaaaaaaaaatcattcccaaacttcatacagagaataacaataagggagatcaggaaccacccatggttcctgaagaacctgccaagagagctcacagaagctgcacaggcaatgtactacaagaaggataacagtgccccgacctactccgtccagtcggtcgaggagatcatgaagattgtcgaggaagcgcggacgccgcctcggtcctccacccccgtggccggctttggctggcaagaggaggatgagcaggaggacaacagcaagaagccAGAGGaGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGAAACAAGTCCATGCCAGTGGTGAGTTTCAGCTCAGCTGAGTATTTCTGTCCAGCAGCACAGGAAGATTGCAAACTGGAGATATTGTCATAATGTGGCAGCTGATGGTCACACTCCCATTCTGTAGTTTGCAGTCTTGTTTTTCTTtttttcagtttcattttttcttttcttctctttgatgctgcaacagtgtaaattaccaaagtggttctgtcactgtctttgtaatgactgatttaagttagcatgcagaaacataatgtattgaataaaaccatctcattgagcatcttctttctcaga
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| CDS seq | atggagaggtacgagctgctcaaggacatcggcgccgggaacttcggggtggcgcggctgatgcggaacaaggagaccaaggagctggtcgccatgaagtacatccctcggggcctcaagattgacgagaatgtggcgagggagatcatcaaccaccggtcgctgcggcaccccaacatcatccgcttcaaggaggtggtggtcacgccgacgcacctggcgatcgtgatggagtacgctgccggcggcgagttgttcgaccggatctgcaacgccgggaggttcagcgaggacgaggccaggtatttcttccagcagctcatctgcggcgtgagctactgccacttcatgcaaatttgccaccgggatttgaagctggagaacacgctgctggacggcagcccggcgccccgcctcaagatctgcgacttcggttactccaagtcgtcgctgctgcactcgaagcccaagtcgacggtcgggacgccggcgtacatcgcgccggaggtgctatcccgccGggagtacgacggcaagacagccgatgtgtggtcttgtggagtgactctttatgtgatgcttgttggtgcttacccctttgaggaccctgatgaccccaagaatttcagaaagaccattgggagaataatgtcaattcagtacaaaatacccgagtacgtccatgtatcccaggactgcaggcaactcctttctagaatttttgttgcaaaccctgcaaagagaataacaataagggagatcaggaaccacccatggttcctgaagaacctgccaagagagctcacagaagctgcacaggcaatgtactacaagaaggataacagtgccccgacctactccgtccagtcggtcgaggagatcatgaagattgtcgaggaagcgcggacgccgcctcggtcctccacccccgtggccggctttggctggcaagaggaggatgagcaggaggacaacagcaagaagccAGAGGaGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGA
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| Protein seq | MERYELLKDIGAGNFGVARLMRNKETKELVAMKYIPRGLKIDENVAREIINHRSLRHPNIIRFKEVVVTPTHLAIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKTADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRIFVANPAKRITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSSTPVAGFGWQEEDEQEDNSKKPEERKNRRKRKMLRMSTTSR |
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| Function | Serine/threonine-protein kinase SAPK7 [UniProtKB/Swiss-Prot:Q7XQP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013670 | OsLima_04g0013670.01 | Chr04 | 22755549 | 22762479 | + | NAM | ||
| CDS seq | atggagaggtacgagctgctcaaggacatcggcgccgggaacttcggggtggcgcggctgatgcggaacaaggagaccaaggagctggtcgccatgaagtacatccctcggggcctcaagattgacgagaatgtggcgagggagatcatcaaccaccggtcgctgcggcaccccaacatcatccgcttcaaggaggtggtggtcacgccgacgcacctggcgatcgtgatggagtacgctgccggcggcgagttgttcgaccggatctgcaacgccgggaggttcagcgaggacgaggccaggtatttcttccagcagctcatctgcggcgtgagctactgccacttcatgcaaatttgccaccgggatttgaagctggagaacacgctgctggacggcagcccggcgccccgcctcaagatctgcgacttcggttactccaagtcgtcgctgctgcactcgaagcccaagtcgacggtcgggacgccggcgtacatcgcgccggaggtgctatcccgccGggagtacgacggcaagacagccgatgtgtggtcttgtggagtgactctttatgtgatgcttgttggtgcttacccctttgaggaccctgatgaccccaagaatttcagaaagaccattgggagaataatgtcaattcagtacaaaatacccgagtacgtccatgtatcccaggactgcaggcaactcctttctagaatttttgttgcaaaccctgcaaagagaataacaataagggagatcaggaaccacccatggttcctgaagaacctgccaagagagctcacagaagctgcacaggcaatgtactacaagaaggataacagtgccccgacctactccgtccagtcggtcgaggagatcatgaagattgtcgaggaagcgcggacgccgcctcggtcctccacccccgtggccggctttggctggcaagaggaggatgagcaggaggacaacagcaagaagccAGAGGaGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGA
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| Protein seq | MERYELLKDIGAGNFGVARLMRNKETKELVAMKYIPRGLKIDENVAREIINHRSLRHPNIIRFKEVVVTPTHLAIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKTADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRIFVANPAKRITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSSTPVAGFGWQEEDEQEDNSKKPEERKNRRKRKMLRMSTTSR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013670 | OsLima_04g0013670.02 | Chr04 | 22755772 | 22762482 | + | NAM | ||
| CDS seq | atggagaggtacgagctgctcaaggacatcggcgccgggaacttcggggtggcgcggctgatgcggaacaaggagaccaaggagctgattgacgagaatgtggcgagggagatcatcaaccaccggtcgctgcggcaccccaacatcatccgcttcaaggaggtggtggtcacgccgacgcacctggcgatcgtgatggagtacgctgccggcggcgagttgttcgaccggatctgcaacgccgggaggttcagcgaggacgaggccaggtatttcttccagcagctcatctgcggcgtgagctactgccacttcatgcaaatttgccaccgggatttgaagctggagaacacgctgctggacggcagcccggcgccccgcctcaagatctgcgacttcggttactccaagtcgtcgctgctgcactcgaagcccaagtcgacggtcgggacgccggcgtacatcgcgccggaggtgctatcccgccGggagtacgacggcaagacagccgatgtgtggtcttgtggagtgactctttatgtgatgcttgttggtgcttacccctttgaggaccctgatgaccccaagaatttcagaaagaccattgggagaataatgtcaattcagtacaaaatacccgagtacgtccatgtatcccaggactgcaggcaactcctttctagaatttttgttgcaaaccctgcaaagagaataacaataagggagatcaggaaccacccatggttcctgaagaacctgccaagagagctcacagaagctgcacaggcaatgtactacaagaaggataacagtgccccgacctactccgtccagtcggtcgaggagatcatgaagattgtcgaggaagcgcggacgccgcctcggtcctccacccccgtggccggctttggctggcaagaggaggatgagcaggaggacaacagcaagaagccAGAGGaGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGA
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| Protein seq | MERYELLKDIGAGNFGVARLMRNKETKELIDENVAREIINHRSLRHPNIIRFKEVVVTPTHLAIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKTADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRIFVANPAKRITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSSTPVAGFGWQEEDEQEDNSKKPEERKNRRKRKMLRMSTTSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 22755858 | 22756022 | + | OsLima_04g0013670.01 | OsLima_04g0013670.01,OsLima_04g0013670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.264359 | 0.369632 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0432000 | RBH | 1.632323 | 2.441144 | 4.096451 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35240 | RBH | 1.089951 | 1.621181 | 1.040498 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0432000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013710 | RBH | 1.088439 | 26.562683 | 4.837814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014550 | RBH | 0.080291 | 2.016387 | 2.140587 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014310 | RBH | 0.798762 | 12.055135 | 7.184889 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013880 | RBH | 0.044460 | 0.869927 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014210 | RBH | 3.603115 | 51.315960 | 6.258079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0336400 | RBH | 11.5476935 | 29.4704315 | 21.685258 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013120 | RBH | 0.220664 | 1.713518 | 0.528994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0332400 | RBH | 7.6345705 | 11.007913 | 23.3872395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020770 | RBH | 0.761044 | 0.138074 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013450 | RBH | 0.347557 | 35.785946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013420 | RBH | 4.335200 | 57.794430 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013990 | RBH | 1.144490 | 1.634726 | 1.554049 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014230 | RBH | 0.797203 | 22.334949 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013300 | RBH | 0.448035 | 19.601767 | 3.701250 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013320 | RBH | 0.893081 | 38.826839 | 7.323709 |
