Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020770 | OGI:02059780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:22286691-22291828 | ||||||||
| Gene Symbol | SAPK6, OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6 | ||||||||||
| DNA seq | gtccagaggcaaaaaaattatttcaatacgtagaatgaggttaaacagatctcatgcatatatacacatttgtgttgcttatctcgttggtgaaaagaaaaaatattgtctccctaaataaacacttgtcaagaaataagatttattccacaagctatatacaaccttgctaccttaaccatccaaccattacaaaggcactggagagcctatttggtagtaataatttacggtgttaacatatcacaagatAaaaaaaaagaacaggataaaagaaaaggaagacccaaggcaacaacagaaagttaaaagctacaaagacaaactaataacgaaaaggatgcgacatctcatcacccccacaactaccacaaagtacaaacatgcacaaaaacaccctcttgccggcaacagcaaagcttgaactcaacatcttatcagctcttctgcaagtcacagctggcatgggcttgcttcacctgcttggtgtactcgtcctcgctatcgccttcctcgccctcctcctcatccctgtctccctcgtcgtcgtcgggattcttaccgtcctcctgctcttcttcctcggtccaaccgaaaccggccactggagtcgacgatggaggtggtgtctttgcctcttgtacaatcttcatgatctcgtcgacggtctgatccgagaatgtaggggcactgttgtccttcttgtagtacttcgcttgcgccgcttctgtaagctcccgcggcaagttcttcataaaccaagggtggtttctgatctctcttattgttattctctgcatgacatggtggaaatggtattatgttaaatggaacataatggaacatggattgaagttccgcgaggtatcatcttcagtggatacctttgcaggattcgcgacaaagattcgagagaggagttgtctacaatcttgggatatatggacgtactctggtattttgtactgaattgatacgattctctgcaaaataaaaatgtgagcataatatatttgtacattcgtgtggcgtttgaagttggaatttagagaggctgaagtgggtgaattattaccccgattgtttttctgaaattcttgggatcatcggggtcctcaaaagggtaagcaccgacgagcatcacataaagggtcaccccacaagaccatacatctgccatctgcacatagtgcaaacaataatgttagtgtgttacaaaaacaagagaagcataattttaagaaagaatgaacctcaaaaagcgtaggaaattagagagtagtcAaaaaaaaaaaaaaaacagaaggcactatattaacggatcaagaactcaagaatcctgatggacagaaaaaaggagcagaagaatcccaagttccagcagttcaaggacagagctctttgaaagagtatccagtaagtgaaactagcgaatttaagtctattgttcaggaaaatgtgaagcaacgaatttaagtgaaactagcaagagtcaattaggagttggtcacatgtgagtacaacatggtggcttgagaacatcagttacactcactcaattaaaaagataatatgcaaataggtattcatgaaggtcattatctttgaaatcaaaaataaagaaaaatatgtacaactgacagatgaaataaagtgaagaacacaatttgaggatagcggagttctgggagcagccgaagaaaatagaaaatatggcagagacctatggacatttgggcagttcgtctagaaacaaccatatattctcctaactgatctcaatgtcacttttaaaaaaatgaaccaatctcagtgccgctttatgatagcctctaccacaaaggcaaccaatcttgcatgctagaaagaaattcaattggtagtttggcatggcatcccaaaaaagtatgaaataaagtgcaatagcaattggtcaaataacatcaatattaaccagacaaactacagatggcaaaatgaaacgcccaaaaaaaaggatgaagaaaaacagtcccaaaggaccacaggttaccaaccagatgttcagtctaagatggctacatgaaaagatcaggtctgagggcccctattgtacacatcaacatgatggaaatacggtccagaaaaggacataaagcatgatgaatgggaacacaattcgattcatggaacatgtccacggggcctccccacgatacatagatcatcacgcgcaaccatttcaaatcttttcatgctttttttttctatgtactacctctgaagaaataactacattattgcttttggaactccacaatttttttaggcaatatgaatcctatctgtttgctggtcaaggattcaccacacaacaaagcacacagcgattttgtttttattaatcctcactatcaagcagatcattaagcatgataacaagatctccatcaacagaatctggtgctcttatctatcaaatctaactttctttttggatcatcacatcaacaacaccatgagagacaagacttcaccatgtataccaactgtgaaccagatcaagggaacaattaaagcaggcacgcacccggagggggcagagatcaccatcaagcatgctgtgattactactccctccgtcccaaaataagtatagttttacactattcatgtccaacgtttgaccgttcgtcttatttgaaattttttttgattagtatttttattgttattagatgataaaacatgaatagtattttatgggtgactatttttttttaaattttttcataaatttttcaaataagacgaacggtcaaacgttggacacggatcccacgactacacttattttgggacggaggtagtaaaaagaaaaatgtcccagcgacaacatcgggaacatttcggtaggatatctcttcccccctctttgctcctttgacaaaattgtcaacacaaataattggaggagcacttggaagttggagcttggaaaactggaatccccaccccacagaggtaaggacaaagaaaaacactggcaattggggtcaggtccattccctgtctacttgaccttagaacaaaattccaagaatgtaaaaccactgattagagaggtgcccccatgataccatgagcctggtctacaaggcatatatgtctgctacgtttgggttcacatactaaaactccagtcctggcattcacatgaaaagttcagactacgtttgggttggggccggagggactgcagcaagctagcacaagcataggtgacccacacaaggttaatttcaccatccttaaaaaattacaatacattttctagtgtgaaacttcttagttaccttgggatattaaaattttgcgtgtaaaattcaggtgccttaagataacacaaggattgagcacacaccaaaaaaggaaagaaaagaaaaggattaagcacaaagtctccagctgccctggacacaactggagagacaggcaagctagaggagcaagatgactgagactgaccttgccgtcatactcccggcgagagagcacctccggagcgatgtacgcgggagtcccgaccgtcgacttcggctttgagtgcagcagtgatgactgaccacaaaaacattcgcaaaaagaacggtcttagtacgcgtaagtaacccactatagagctaaattaaagagcaataaatacgatattttcgtaagtctaagtgttctttttgccatcagttagttcgagtgatgtccctcttttatgtacgtgaagaaactaaaggattgcttgataacatcatccgataaaaaagactgagaaaaaaaaaagggcgcaaagtttgattctcaatagcggcacgagtttaataaggataatgaggatagcgacccagtttcgtgtcaaaatttttgtcctccccaacatgccaagttcaacaaggaaggcttctttccgtatacctttctaccaaaaaacatgcacggtatgaaagaacataaaaatcttcctttttttaaaaaaaaaagagagagaagaaattgttaccttggagtagccaaagtcgcagatcttgaggcgcggcgcagggctgccatccagcagcgtgttctccagcttcaaatcccggtggcaaatttgctgcgagatcaaacaaaacacgcaatcctcatcagcttaacattttgaaaaatttatacttaaagctttttttatattaacagaaaaataacaaattattgatgtcctcaccatgaagtggcagtagctgacgccgcaaattagttgctggaagaaatacctcgactagaacagtagcaatccacacgtcccccaatttgaaaacacaaaattaaaattagcacgcaaacctcacgaatttttgagggggcaaaaaaaaagagggaaaagacttgggacccgtctaattcgaggagattagatgatcacctcgtcctcgctgaatctcccggcgctgcagatccggtcgaacagctcgccgccggcggcgtactccatgacgatcgcgaggtgggtaggcgtgagcacgacctaaacaaaacaaaattcccccaaaattacgaactaaattttcaaaaagaaaataaaaataccgagcaagaaccgcgaatttctcagaaatcccgcgaattccgcggccggcctcacctccttgaaccggatgatgtttgggtgccgcagcgagcggtggtttatgatctccctcgccacattctcgtcaatctgcaaaaaaccacccgcaaaccccgccaaaaatcagccaagaaaacgagaaattaagaagaagaaaccctagctcgcttcgaatcacgcacgcaccttgaggccacgcggtatgtacttcatggcgacgagctccttggtctccctgttccgcatcagccgcgccacaccgaagttgcccgacccgatgtccttgagcagctcgtacttctccatggcggcgcgggatcccggacccgtcctgcctgctccgatcgaattcggcgccttccttgcttgctcctgctggttcttggtcttggagaggagaggagaggaaggagggaatggaagaggattcgaagcttaacgaggaggcttcttttttatactcctatttattagtagcggtttctctctcctcctgctc
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| CDS seq | atggagaagtacgagctgctcaaggacatcgggtcgggcaacttcggtgtggcgcggctgatgcggaacagggagaccaaggagctcgtcgccatgaagtacataccgcgtggcctcaagattgacgagaatgtggcgagggagatcataaaccaccgctcgctgcggcacccaaacatcatccggttcaaggaggtcgtgctcacgcctacccacctcgcgatcgtcatggagtacgccgccggcggcgagctgttcgaccggatctgcagcgccgggagattcagcgaggacgagtcgaggtatttcttccagcaactaatttgcggcgtcagctactgccacttcatgcaaatttgccaccgggatttgaagctggagaacacgctgctggatggcagccctgcgccgcgcctcaagatctgcgactttggctactccaagtcatcactgctgcactcaaagccgaagtcgacggtcgggactcccgcgtacatcgctccggaggtgctctctcgccgggagtatgacggcaagatggcagatgtatggtcttgtggggtgaccctttatgtgatgctcgtcggtgcttacccttttgaggaccccgatgatcccaagaatttcagaaaaacaatcgggagaatcgtatcaattcagtacaaaataccagagtacgtccatatatcccaagattgtagacaactcctctctcgaatctttgtcgcgaatcctgcaaagagaataacaataagagagatcagaaaccacccttggtttatgaagaacttgccgcgggagcttacagaagcggcgcaagcgaagtactacaagaaggacaacagtgcccctacattctcggatcagaccgtcgacgagatcatgaagattgtacaagaggcaaagacaccacctccatcgtcgactccagtggccggtttcggttggaccgaggaagaagagcaggaggacggtaagaatcccgacgacgacgagggagacagggatgaggaggagggcgaggaaggcgatagcgaggacgagtacaccaagcaggtgaagcaagcccatgccagctgtgacttgcagaagagctga
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| Protein seq | MEKYELLKDIGSGNFGVARLMRNRETKELVAMKYIPRGLKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICSAGRFSEDESRYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIVSIQYKIPEYVHISQDCRQLLSRIFVANPAKRITIREIRNHPWFMKNLPRELTEAAQAKYYKKDNSAPTFSDQTVDEIMKIVQEAKTPPPSSTPVAGFGWTEEEEQEDGKNPDDDEGDRDEEEGEEGDSEDEYTKQVKQAHASCDLQKS |
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| Function | Serine/threonine-protein kinase SAPK6 [UniProtKB/Swiss-Prot:Q6ZI44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020770 | OsLima_02g0020770.01 | Chr02 | 22286691 | 22291828 | - | NAM | ||
| CDS seq | atggagaagtacgagctgctcaaggacatcgggtcgggcaacttcggtgtggcgcggctgatgcggaacagggagaccaaggagctcgtcgccatgaagtacataccgcgtggcctcaagattgacgagaatgtggcgagggagatcataaaccaccgctcgctgcggcacccaaacatcatccggttcaaggaggtcgtgctcacgcctacccacctcgcgatcgtcatggagtacgccgccggcggcgagctgttcgaccggatctgcagcgccgggagattcagcgaggacgagtcgaggtatttcttccagcaactaatttgcggcgtcagctactgccacttcatgcaaatttgccaccgggatttgaagctggagaacacgctgctggatggcagccctgcgccgcgcctcaagatctgcgactttggctactccaagtcatcactgctgcactcaaagccgaagtcgacggtcgggactcccgcgtacatcgctccggaggtgctctctcgccgggagtatgacggcaagatggcagatgtatggtcttgtggggtgaccctttatgtgatgctcgtcggtgcttacccttttgaggaccccgatgatcccaagaatttcagaaaaacaatcgggagaatcgtatcaattcagtacaaaataccagagtacgtccatatatcccaagattgtagacaactcctctctcgaatctttgtcgcgaatcctgcaaagagaataacaataagagagatcagaaaccacccttggtttatgaagaacttgccgcgggagcttacagaagcggcgcaagcgaagtactacaagaaggacaacagtgcccctacattctcggatcagaccgtcgacgagatcatgaagattgtacaagaggcaaagacaccacctccatcgtcgactccagtggccggtttcggttggaccgaggaagaagagcaggaggacggtaagaatcccgacgacgacgagggagacagggatgaggaggagggcgaggaaggcgatagcgaggacgagtacaccaagcaggtgaagcaagcccatgccagctgtgacttgcagaagagctga
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| Protein seq | MEKYELLKDIGSGNFGVARLMRNRETKELVAMKYIPRGLKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFDRICSAGRFSEDESRYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIVSIQYKIPEYVHISQDCRQLLSRIFVANPAKRITIREIRNHPWFMKNLPRELTEAAQAKYYKKDNSAPTFSDQTVDEIMKIVQEAKTPPPSSTPVAGFGWTEEEEQEDGKNPDDDEGDRDEEEGEEGDSEDEYTKQVKQAHASCDLQKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.761044 | 0.138074 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0551100 | RBH | 5.149127 | 5.724770 | 10.429237 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34600 | RBH | 3.238011 | 3.578541 | 2.479133 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0551100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020830 | RBH | 0.871667 | 9.828259 | 6.397965 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020920 | RBH | 0.842374 | 1.846568 | 4.048619 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020900 | RBH | 3.562343 | 8.118844 | 11.732521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020650 | RBH | 0.498163 | 0.264542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020560 | RBH | 23.447258 | 6.009885 | 11.740491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0342400 | RBH | 8.5367155 | 14.3024385 | 25.100483 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020270 | RBH | 0.677747 | 0.558228 | 1.438988 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0367200 | RBH | 14.02543 | 21.4677885 | 16.4823975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013670 | RBH | 0.264359 | 0.369632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020510 | RBH | 2.760983 | 15.759475 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020940 | RBH | 13.683621 | 25.427454 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020640 | RBH | 1.218873 | 0.409662 | 1.045215 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020470 | RBH | 0.488004 | 2.314450 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020910 | RBH | 1.453382 | 1.033618 | 3.978745 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020660 | RBH | 1.442607 | 22.471092 | 10.786474 |
