Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0012910 | OGI:04064260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22076688-22078168 | ||||||||
| Gene Symbol | PUB34, OsPUB34 | ||||||||||
| DNA seq | ttacatccaaaaatcgtaggagaagacctaaggaataaaaggttaattgaaccttaaactcactgtatatcaaatcatgaagaagccaagatcgaagagaaattaatctcttgcatgtgatgaagatatcagcgagggtaggaagcattcaagtgcgaggccaagcatggcgagtccctccacaccctggcgtgcatcttgagcatctccctcgccctcgccctcgtccgctcgccggaggcgccgacctgcaccaggaagagcagcctcgccaccacgccgacggccagcatctcctgcagcaccgccgacgtcgccgagtgcctcgccacggcgtgcagcgcgcgcacggcgctctcggcgcccgccgcggcgggcagccgcgtcgccgcgcacgccaccgccgcgagccccgccgggtgcgccaccagcgccaggcgcccctccgcgcagccgcagatgtggtcgatcgccacggcggcgagctcgcacgcgcgccggtcgccgccgccgccgccgcagccctcgtcgaggaggaggcgcacgagcgccgacacggcgccggcgtcgaccgccttgacgcggttccggccccacgggcagagccggcagagcacgtggagcgccaccttgaccgccttcgccgacggcctgtccgccaccacccccaccacgccgtcgaccagcgcggcgctcgccgacgtcagccgcgcgggggccatcgccgggagcgccgatttcagcaggtggattccctgcatccgcgagaggtagctcggccgccgcagcacgcacgccatggtttccaagaaatcctcaccgccgctgtcctccaagaccctcttgaagctctcctcggagagcttgagcgaatgcaggatgctcagggccgcctcctccggcgagctcgccttcgccggatcatgcacgccgccgcacgtcgtctcttccggcttggccgacgtcgcgtcgtccacgcccgccacggaggtgcgctccttgacgacggacaggaggaactccacggcgccggaggcgccctggacgcaccgccggttgcggtcgctctcggcgacgatgtcggcgagctccctcagcgaagccatcagctcctcccgctgacgacgccggcgcagcagcggccgcgcggcgtccacgatggcggcgacgcgggcggcgtcgacgggggggcgcggggtggggaagcgctcgacggcgtggacggcgcaccacccctgtatgaggcggcggagcgtgtggttgggcgtgggctcccggtccgccggcgccagccGCTgcttggtcaccgggcactcgccgtggccgtcggtgaacacccaccgctcgatgctctcccggtcgtaggtgatccccgtcgacagcgtcaccgggtcccgcatgatctccagcgagatcgggcacatgaagtaggacggcacctccaccgccggcgccgccgccggcgacgactcctcacccat
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| CDS seq | atgggtgaggagtcgtcgccggcggcggcgccggcggtggaggtgccgtcctacttcatgtgcccgatctcgctggagatcatgcgggacccggtgacgctgtcgacggggatcacctacgaccgggagagcatcgagcggtgggtgttcaccgacggccacggcgagtgcccggtgaccaagcAGCggctggcgccggcggaccgggagcccacgcccaaccacacgctccgccgcctcatacaggggtggtgcgccgtccacgccgtcgagcgcttccccaccccgcgcccccccgtcgacgccgcccgcgtcgccgccatcgtggacgccgcgcggccgctgctgcgccggcgtcgtcagcgggaggagctgatggcttcgctgagggagctcgccgacatcgtcgccgagagcgaccgcaaccggcggtgcgtccagggcgcctccggcgccgtggagttcctcctgtccgtcgtcaaggagcgcacctccgtggcgggcgtggacgacgcgacgtcggccaagccggaagagacgacgtgcggcggcgtgcatgatccggcgaaggcgagctcgccggaggaggcggccctgagcatcctgcattcgctcaagctctccgaggagagcttcaagagggtcttggaggacagcggcggtgaggatttcttggaaaccatggcgtgcgtgctgcggcggccgagctacctctcgcggatgcagggaatccacctgctgaaatcggcgctcccggcgatggcccccgcgcggctgacgtcggcgagcgccgcgctggtcgacggcgtggtgggggtggtggcggacaggccgtcggcgaaggcggtcaaggtggcgctccacgtgctctgccggctctgcccgtggggccggaaccgcgtcaaggcggtcgacgccggcgccgtgtcggcgctcgtgcgcctcctcctcgacgagggctgcggcggcggcggcggcgaccggcgcgcgtgcgagctcgccgccgtggcgatcgaccacatctgcggctgcgcggaggggcgcctggcgctggtggcgcacccggcggggctcgcggcggtggcgtgcgcggcgacgcggctgcccgccgcggcgggcgccgagagcgccgtgcgcgcgctgcacgccgtggcgaggcactcggcgacgtcggcggtgctgcaggagatgctggccgtcggcgtggtggcgaggctgctcttcctggtgcaggtcggcgcctccggcgagcggacgagggcgagggcgagggagatgctcaagatgcacgccagggtcttctcctacgatttttggatgtaa
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| Protein seq | MGEESSPAAAPAVEVPSYFMCPISLEIMRDPVTLSTGITYDRESIERWVFTDGHGECPVTKQRLAPADREPTPNHTLRRLIQGWCAVHAVERFPTPRPPVDAARVAAIVDAARPLLRRRRQREELMASLRELADIVAESDRNRRCVQGASGAVEFLLSVVKERTSVAGVDDATSAKPEETTCGGVHDPAKASSPEEAALSILHSLKLSEESFKRVLEDSGGEDFLETMACVLRRPSYLSRMQGIHLLKSALPAMAPARLTSASAALVDGVVGVVADRPSAKAVKVALHVLCRLCPWGRNRVKAVDAGAVSALVRLLLDEGCGGGGGDRRACELAAVAIDHICGCAEGRLALVAHPAGLAAVACAATRLPAAAGAESAVRALHAVARHSATSAVLQEMLAVGVVARLLFLVQVGASGERTRARAREMLKMHARVFSYDFWM |
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| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0012910 | OsLima_04g0012910.01 | Chr04 | 22076688 | 22078168 | - | NAM | ||
| CDS seq | atgggtgaggagtcgtcgccggcggcggcgccggcggtggaggtgccgtcctacttcatgtgcccgatctcgctggagatcatgcgggacccggtgacgctgtcgacggggatcacctacgaccgggagagcatcgagcggtgggtgttcaccgacggccacggcgagtgcccggtgaccaagcAGCggctggcgccggcggaccgggagcccacgcccaaccacacgctccgccgcctcatacaggggtggtgcgccgtccacgccgtcgagcgcttccccaccccgcgcccccccgtcgacgccgcccgcgtcgccgccatcgtggacgccgcgcggccgctgctgcgccggcgtcgtcagcgggaggagctgatggcttcgctgagggagctcgccgacatcgtcgccgagagcgaccgcaaccggcggtgcgtccagggcgcctccggcgccgtggagttcctcctgtccgtcgtcaaggagcgcacctccgtggcgggcgtggacgacgcgacgtcggccaagccggaagagacgacgtgcggcggcgtgcatgatccggcgaaggcgagctcgccggaggaggcggccctgagcatcctgcattcgctcaagctctccgaggagagcttcaagagggtcttggaggacagcggcggtgaggatttcttggaaaccatggcgtgcgtgctgcggcggccgagctacctctcgcggatgcagggaatccacctgctgaaatcggcgctcccggcgatggcccccgcgcggctgacgtcggcgagcgccgcgctggtcgacggcgtggtgggggtggtggcggacaggccgtcggcgaaggcggtcaaggtggcgctccacgtgctctgccggctctgcccgtggggccggaaccgcgtcaaggcggtcgacgccggcgccgtgtcggcgctcgtgcgcctcctcctcgacgagggctgcggcggcggcggcggcgaccggcgcgcgtgcgagctcgccgccgtggcgatcgaccacatctgcggctgcgcggaggggcgcctggcgctggtggcgcacccggcggggctcgcggcggtggcgtgcgcggcgacgcggctgcccgccgcggcgggcgccgagagcgccgtgcgcgcgctgcacgccgtggcgaggcactcggcgacgtcggcggtgctgcaggagatgctggccgtcggcgtggtggcgaggctgctcttcctggtgcaggtcggcgcctccggcgagcggacgagggcgagggcgagggagatgctcaagatgcacgccagggtcttctcctacgatttttggatgtaa
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| Protein seq | MGEESSPAAAPAVEVPSYFMCPISLEIMRDPVTLSTGITYDRESIERWVFTDGHGECPVTKQRLAPADREPTPNHTLRRLIQGWCAVHAVERFPTPRPPVDAARVAAIVDAARPLLRRRRQREELMASLRELADIVAESDRNRRCVQGASGAVEFLLSVVKERTSVAGVDDATSAKPEETTCGGVHDPAKASSPEEAALSILHSLKLSEESFKRVLEDSGGEDFLETMACVLRRPSYLSRMQGIHLLKSALPAMAPARLTSASAALVDGVVGVVADRPSAKAVKVALHVLCRLCPWGRNRVKAVDAGAVSALVRLLLDEGCGGGGGDRRACELAAVAIDHICGCAEGRLALVAHPAGLAAVACAATRLPAAAGAESAVRALHAVARHSATSAVLQEMLAVGVVARLLFLVQVGASGERTRARAREMLKMHARVFSYDFWM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0686000 | SBH | 0.153453 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0686000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012930 | RBH | 0.0 | 0.370185 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013760 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013460 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013400 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0326300 | RBH | 0.0217095 | 2.839062 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012310 | RBH | 0.0 | 0.084816 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0323100 | RBH | 0.009426 | 2.603638 | 0.012914 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012500 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013090 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013320 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012470 | RBH | 0.0 | 0.0 | 0.0 |
