Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020270 | OGI:02057610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:21406996-21408566 | ||||||||
| Gene Symbol | PUB33, OsPUB33 | ||||||||||
| DNA seq | tgagcacattaatttgatacatgtaatctaggcaatgaaagatttatagtgtatttttgtacagaattaatgaaagatttacagtgtattttgtacattcagatcataaacaaattaaagaactaaaagtaatcacaaaatctaattaactactaagaggagtgcaaattaaagcatgtgctcctcttagcaattaataataattaatggatcggtggatggatgtgatggtgatgaaatgatcaggaggggtaagaagccttgaggtgagcttgcaagcatggcgagtccttccaaaccctagcgttcgccctgagcatctccctcgccctcgccctggctcgctcgccgccgtccgcctgcagcaccagcagcagcttcgccaccacgccgacggcgagcatctcctgcagcacggccggcgtcgccgcgttcctcgcgacggcgtggagcgcgcgcacggcgctctcggtggccgccggcgacacccgcatcgccctcttggacaccacggcgagccccgccgggtgcgccaccagctccgacctcccctccgcgcacccgcagaggtggtcgatcgccaccaccgccagctccgccgcgcgccgccgcccgccgccgccctcctcgtcgaggaggagctccaccagcgccgccaccgcgccggcctccaccgccttcacgcggttccgcccccacgggcacagccggcacagcacgtgcagcgccgccttcaccgccttcgacgacacgccgtcggacacaacccggaccacctcctccaccagctcggggctcaccgccatcagccgctccggcggcatcgccgacgtcaccgccttcaggaggaggatggcgtacgcgcgcgaacggtagctcgggcggcggagcacggaggcgagggtgtcgaggaagccgacgccattgtccttgccgaggacgcggcgcagggtgggctcggacggcttgagggagtagagcacgcccagggcctcctcctccggcgagctcgtcgacatgggggaatcgatcaccgagtcgaacaggtcgtcgtcgtccgagctggctgaggtggaggcggcggcgtggctctggacgacgacggagacgaggaactcgacggcgccgggcgtggcctcgacgcagcgcttgttgcggtcgctctcggcggcgatggccttgatctcccggagcgcggcgagctgccgctgcctgccgccgccgccgagcatcgtcgtcgtcccctcgtcgacgagcgcggcgacgcggcaggagtcgacgggcgggcgcggggtggggaaccgctcgacggcgtgcgcggcgcaccacgcctggatgagccgccgcagcgtgtggttgggcgtcgcctcccgctccgccggcgccagctgccgccgcgtcaccgggcacgtccccttccccccgtcgccgccgccgccgccgaacatccaccgctcgatgctgctccggtcgtaggtgatccccgtcgccagcgtcaccgggtccctcatgatctccagcgagatcgggcacaggaagtaggacggcacctccgccgccgccacctccat
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| CDS seq | atggaggtggcggcggcggaggtgccgtcctacttcctgtgcccgatctcgctggagatcatgagggacccggtgacgctggcgacggggatcacctacgaccggagcagcatcgagcggtggatgttcggcggcggcggcggcgacggggggaaggggacgtgcccggtgacgcggcggcagctggcgccggcggagcgggaggcgacgcccaaccacacgctgcggcggctcatccaggcgtggtgcgccgcgcacgccgtcgagcggttccccaccccgcgcccgcccgtcgactcctgccgcgtcgccgcgctcgtcgacgaggggacgacgacgatgctcggcggcggcggcaggcagcggcagctcgccgcgctccgggagatcaaggccatcgccgccgagagcgaccgcaacaagcgctgcgtcgaggccacgcccggcgccgtcgagttcctcgtctccgtcgtcgtccagagccacgccgccgcctccacctcagccagctcggacgacgacgacctgttcgactcggtgatcgattcccccatgtcgacgagctcgccggaggaggaggccctgggcgtgctctactccctcaagccgtccgagcccaccctgcgccgcgtcctcggcaaggacaatggcgtcggcttcctcgacaccctcgcctccgtgctccgccgcccgagctaccgttcgcgcgcgtacgccatcctcctcctgaaggcggtgacgtcggcgatgccgccggagcggctgatggcggtgagccccgagctggtggaggaggtggtccgggttgtgtccgacggcgtgtcgtcgaaggcggtgaaggcggcgctgcacgtgctgtgccggctgtgcccgtgggggcggaaccgcgtgaaggcggtggaggccggcgcggtggcggcgctggtggagctcctcctcgacgaggagggcggcggcgggcggcggcgcgcggcggagctggcggtggtggcgatcgaccacctctgcgggtgcgcggaggggaggtcggagctggtggcgcacccggcggggctcgccgtggtgtccaagagggcgatgcgggtgtcgccggcggccaccgagagcgccgtgcgcgcgctccacgccgtcgcgaggaacgcggcgacgccggccgtgctgcaggagatgctcgccgtcggcgtggtggcgaagctgctgctggtgctgcaggcggacggcggcgagcgagccagggcgagggcgagggagatgctcagggcgaacgctagggtttggaaggactcgccatgcttgcaagctcacctcaaggcttcttacccctcctga
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| Protein seq | MEVAAAEVPSYFLCPISLEIMRDPVTLATGITYDRSSIERWMFGGGGGDGGKGTCPVTRRQLAPAEREATPNHTLRRLIQAWCAAHAVERFPTPRPPVDSCRVAALVDEGTTTMLGGGGRQRQLAALREIKAIAAESDRNKRCVEATPGAVEFLVSVVVQSHAAASTSASSDDDDLFDSVIDSPMSTSSPEEEALGVLYSLKPSEPTLRRVLGKDNGVGFLDTLASVLRRPSYRSRAYAILLLKAVTSAMPPERLMAVSPELVEEVVRVVSDGVSSKAVKAALHVLCRLCPWGRNRVKAVEAGAVAALVELLLDEEGGGGRRRAAELAVVAIDHLCGCAEGRSELVAHPAGLAVVSKRAMRVSPAATESAVRALHAVARNAATPAVLQEMLAVGVVAKLLLVLQADGGERARARAREMLRANARVWKDSPCLQAHLKASYPS |
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| Function | E3 ubiquitin-protein ligase PUB23 [UniProtKB/Swiss-Prot:Q84TG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020270 | OsLima_02g0020270.01 | Chr02 | 21406996 | 21408566 | - | NAM | ||
| CDS seq | atggaggtggcggcggcggaggtgccgtcctacttcctgtgcccgatctcgctggagatcatgagggacccggtgacgctggcgacggggatcacctacgaccggagcagcatcgagcggtggatgttcggcggcggcggcggcgacggggggaaggggacgtgcccggtgacgcggcggcagctggcgccggcggagcgggaggcgacgcccaaccacacgctgcggcggctcatccaggcgtggtgcgccgcgcacgccgtcgagcggttccccaccccgcgcccgcccgtcgactcctgccgcgtcgccgcgctcgtcgacgaggggacgacgacgatgctcggcggcggcggcaggcagcggcagctcgccgcgctccgggagatcaaggccatcgccgccgagagcgaccgcaacaagcgctgcgtcgaggccacgcccggcgccgtcgagttcctcgtctccgtcgtcgtccagagccacgccgccgcctccacctcagccagctcggacgacgacgacctgttcgactcggtgatcgattcccccatgtcgacgagctcgccggaggaggaggccctgggcgtgctctactccctcaagccgtccgagcccaccctgcgccgcgtcctcggcaaggacaatggcgtcggcttcctcgacaccctcgcctccgtgctccgccgcccgagctaccgttcgcgcgcgtacgccatcctcctcctgaaggcggtgacgtcggcgatgccgccggagcggctgatggcggtgagccccgagctggtggaggaggtggtccgggttgtgtccgacggcgtgtcgtcgaaggcggtgaaggcggcgctgcacgtgctgtgccggctgtgcccgtgggggcggaaccgcgtgaaggcggtggaggccggcgcggtggcggcgctggtggagctcctcctcgacgaggagggcggcggcgggcggcggcgcgcggcggagctggcggtggtggcgatcgaccacctctgcgggtgcgcggaggggaggtcggagctggtggcgcacccggcggggctcgccgtggtgtccaagagggcgatgcgggtgtcgccggcggccaccgagagcgccgtgcgcgcgctccacgccgtcgcgaggaacgcggcgacgccggccgtgctgcaggagatgctcgccgtcggcgtggtggcgaagctgctgctggtgctgcaggcggacggcggcgagcgagccagggcgagggcgagggagatgctcagggcgaacgctagggtttggaaggactcgccatgcttgcaagctcacctcaaggcttcttacccctcctga
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| Protein seq | MEVAAAEVPSYFLCPISLEIMRDPVTLATGITYDRSSIERWMFGGGGGDGGKGTCPVTRRQLAPAEREATPNHTLRRLIQAWCAAHAVERFPTPRPPVDSCRVAALVDEGTTTMLGGGGRQRQLAALREIKAIAAESDRNKRCVEATPGAVEFLVSVVVQSHAAASTSASSDDDDLFDSVIDSPMSTSSPEEEALGVLYSLKPSEPTLRRVLGKDNGVGFLDTLASVLRRPSYRSRAYAILLLKAVTSAMPPERLMAVSPELVEEVVRVVSDGVSSKAVKAALHVLCRLCPWGRNRVKAVEAGAVAALVELLLDEEGGGGRRRAAELAVVAIDHLCGCAEGRSELVAHPAGLAVVSKRAMRVSPAATESAVRALHAVARNAATPAVLQEMLAVGVVAKLLLVLQADGGERARARAREMLRANARVWKDSPCLQAHLKASYPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0539200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0539200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020350 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020020 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0330000 | RBH | 0.3886065 | 31.830671 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019710 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0351600 | RBH | 0.550632 | 13.4069185 | 0.007388 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020090 | RBH | 0.0 | 0.0 | 0.0 |
