Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0011560 | OGI:04061480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:20777679-20782989 | ||||||||
| Gene Symbol | RLCK149, OsRLCK149 | ||||||||||
| DNA seq | aaagcctccctcgttgaggcgaccacgagctccccccccaagaccacggcgcccccgcaggcggcgtccaccaccaccaccacctcgatccgcgccgccgccgctggtggggaaggcagctagccggcgaacgcgcgcggaggagaggtggaggggaaatgcgggttcgtctcggcgccgcggggcggagccggaggtgattctgttttcttggcgaggcggaggcggaggtggaggcgatgggttgcttcccgtgcttcgattcgaggatggggGAggaggaggaggaggagctgtactacgggaaggggggagcgcgcggcggaggcaatGggggtggcgctttgtcggctgctgctgcggcggcgtcgtcgtcctccggcgtcggcggcggtgggtgggaggggacgtctacggcggcgccgcgcgtcgagaagatctccgcaggtgcgttccgtgcgtgcgtgcgtgcgtgcgtcgggccgagccgtgtgtgaatcggtcgccgccgccccccccccccccccccccaccccattcgggttggtaggatcggatccgcgcgtgctcgctcttggcttgatactttgatgctctgctagtactctgttacttctcctcctcttggttggtcacgaactcgcgatgaactggttggtacttggTtgatcctcgtgatgggattgagagagagagaagaaaaaaaaaagaagacgacattgaaaatagctttggttttgtgagccttttagatctccgagaaatagcgaggggagaaacaacaaacacgaatcttcggacgaactctgcaacctttttagttttagtatagctcattggattggattgtatatatatgtacgcgcaattcttgtttcaatgttcaagtctattattagtcgcttttaaaaagccatgatttgtgtgggattatgtgcaggggctaggggGAgaggcaatgccaccgtgaagaaggagctctcggctctcaaggatgccaatggcaatgtcatctccgcgcagacgttcaccttccgccagctcgccgcggcgacgaggaacttcagggaggagtgcttcattggggaaggagggtttGggcgcgtttacaagggccggttggacggcactggccaggtaaaaactcatcttttTTTAtttatttatTtttgttggctctgacactttcttgctaaattgctgtagaggtagtggtactgaatttgcttggttgtaccgaaacacgtcattgatttgtctaggacattcaagaaaatcagtgtttgcacttgagtgagagggatccccacaagggaaaaaaaagtccatgccgttcaatcatactagcagatccaatttatgttggcctcaattgtgaatagtgtttaaactgttcataggcccttctgttcattgaaattgaattgaacaagatggatcacatgaaacagctgatgcatgcccTtttttaatttaatattaaatattataaatcagaattcacaaaattatgagattaggtgcagcacttagctgaaaactttgatgcatcccttctgcagattgttgctataaaacagctcaatagggatggtactcaaggaaacaaagaatttctagtggaggttctcatgcttagtttgctgcatcatcaaaaccttgttAatttggttggttattgcgccgatggagatcaacgccttctTGtgtacgagtacatgcccctcggatcattggaagatcatttgcatggtaagactgttctttgtttatttatgttgctctggtgcatagtaatgcctctgtacaagtactgcacaaatctgtgctacctgttgtttctcacatgtttattggagcaggttgtcaatctgccatgctgtctgtcccgcatctgtctgttatttcattttgtccatgtgcatagttcttcctatggttgtgagacattttctctcccagctccaaagtccttttgtccatgcgattgtgcataatgtgcagtgtccagtaggtttttctccatgatagagtgtgccccttttgggggtccataggatttataactacccctcatactggagcattttacctaactgcagttcccaatctttttctttttcgggtgctgcctaattatagtagggtgaactgttcatatttgtacatttattctccagacagtgtaccgtaaaatcaactttttgagacatgtttcacagcataatgttcttttcttggtaattctccagtagagcaaatcaggAaactttatctttttttctgttttgactattcaaagttggatgccattcgtatgtaTgcatttttagcagcaaaagttgctggtgcccagaggacccattgcccccctttaacgaaatccgactagtccaacatgatgcagtgtaatttcaaaataaatcataaatgcagacataaagtgtgtaaacctacacttctttaatttcaagttcattttagatgctaagatattgaaagaaagggacaaacaatactgttattgcatgatgaaccctactgtgctgagcgtttgtctgttttgtatcttgacatatagggcaatttgaaattgaatttttgcagcttttgaaactttgtctgctattatgtgatttattttggaatatttgaaacatcgcgtcatgttgtatttgcaaagtggaacgccaggtcccttgggcatcaaaactggctaactttagtattggtgatgtatccaaaaagtccaaaccacccatttgccttttataacatgcatgtcTttttcagaggcagtaaagaatttaaccttcaaattttaatttccttcaggttaactatgttacctaactgatggctgttagctttcccgccaagatagtagcttgaaatggaattggagcaattattaggtgtacaagtctgctcacttatggaccaacacattcaactaataaagtccatgtttcccacatattagtccatattggtatgaaattataaaccgaactaaagtaacatgggtcaatgggtacccgtgggtcggcacgcttggcaaatgaacagacaaaatagtaaccctggtacactttgggcaatattgtgcccataaagtacattgttgaactataacatttctacaggtctagctatgtaacagtatgctgcgtatattttcttttggaatagtacccctgtgaatctgtgatccatgtgttgagtcagtgttaataaaagggaccagaattttttaacaagtgttgcaagtaggcgcggacccaggattggcccaaggcctgggccagtctattgtaagttgggccttgcatggacataacatagtggaaaaaaatcccagtcataatgggcctccaatcctaggcacgcccctggttgcaagtagagttcagtaggttttcaaacattctgcaaaatatgtgtttgtatgatacctttcagaccttattccaagtgattgtgcatgtgtagtaataccttgagcagtgaaaatatttttttaacctactgaattaattttcacttgtggaaaatacctgatgcagatctccctcctgataaggttcccttggattggaacactaggatgaaaatcgcagcaggtgcggctaaaggtctggagtaccttcatgacaaggctcaaccaccagttatatatagggacttcaagtcatcaaatattctattgggcgaggatttccatccaaagctttcagactttggtcttgctaaattgggtccCGgtggtgacaagtctcacgtctctacacgtgtgatgggaacatatggatattgtgctccggaatatgctatgacgggacagcttacagttaaatcggatgtttatagcttcggagtagtcctgcttgagttgattactggccggaaggccattgacagtaccagaccacatgtagaacaaaaccttgtctcatgggtaagctattgtgtttttctactttctatattagcatctgattatcttaacttctggcatttacactgtgttgacatcagccatcactttcttgaaaagatttattgggaaagtggatgttctaatcattgtcagaactaaatgtagggtgtgtatctagaaatagctacttgatgtctctgttttggtagacaatgtgattgaagcaagcacgtccctacaatatatcttcccaattgtatattgaaatgttggagctgatgtcaatagaagtcatgccaaacccaggatatgaTtttttttttttgatctgctagttccttgtagtgcattactgcttttacgcatttgcatatgtccatattgcttgcatatacttgtgtattcgatgataaagatcatttggtattttctgtgcaatggttgctgctgttctattttttttttggaattgaatggattgaatgtagtcatcagtgattatacttggttaatttgcaggcgcgacctcttttcaacgacaggcggaagctcccaaagatggctgacccGgggctggagggacgatatccgatgcgcgggctctaccaagcgctcgcggtggcatcaatgtgcatccagtcggaggccgcgtcccgacctctcatcgccgatgtcgtgaccgcgctctcctacctggcgtcccagaagtacgatcccaacacgacgccgtcctcaaagaaggccggcggtggcgaggccgggagggcgctgtccaggaacgacgaggcgggcagctccggccacaagtcgccgtcgagcaaggactCcccccgggagcagcagctCccggggatcctcaacgacagggagaggatggtggcggaggcgaagatgtggggggagaactggcgggagaagaggcgcgccgccgccaccacctccagcaatgcccaggtgagcctggattcgcctaccgaaaccggttaagctggctacccccgccattggtgaaggtctctgggcaatgggcatgcgttgctgcttgagctcatcttgtgatcttactagactgggtgtttttttgctttcagttggcaggggtcagctgaaaacgaattgggtggtggtttttcctttctttttttttttttactgtttggtgttagaatgtacatttgtagtggtgaaacaacaagaactgaaaaggcgagagagtgggaggggagaagaatttgggtgctttgtactgtggatgtcatggtgcctgtaaattctcggaaaattttgcatcaacgaggaacaaatttgtcggacctcagttatttgctctgatgtcagacaaaaagaaaggaaagaagatgttgtacaact
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| CDS seq | atgggttgcttcccgtgcttcgattcgaggatggggGAggaggaggaggaggagctgtactacgggaaggggggagcgcgcggcggaggcaatGggggtggcgctttgtcggctgctgctgcggcggcgtcgtcgtcctccggcgtcggcggcggtgggtgggaggggacgtctacggcggcgccgcgcgtcgagaagatctccgcaggggctaggggGAgaggcaatgccaccgtgaagaaggagctctcggctctcaaggatgccaatggcaatgtcatctccgcgcagacgttcaccttccgccagctcgccgcggcgacgaggaacttcagggaggagtgcttcattggggaaggagggtttGggcgcgtttacaagggccggttggacggcactggccagattgttgctataaaacagctcaatagggatggtactcaaggaaacaaagaatttctagtggaggttctcatgcttagtttgctgcatcatcaaaaccttgttAatttggttggttattgcgccgatggagatcaacgccttctTGtgtacgagtacatgcccctcggatcattggaagatcatttgcatgatctccctcctgataaggttcccttggattggaacactaggatgaaaatcgcagcaggtgcggctaaaggtctggagtaccttcatgacaaggctcaaccaccagttatatatagggacttcaagtcatcaaatattctattgggcgaggatttccatccaaagctttcagactttggtcttgctaaattgggtccCGgtggtgacaagtctcacgtctctacacgtgtgatgggaacatatggatattgtgctccggaatatgctatgacgggacagcttacagttaaatcggatgtttatagcttcggagtagtcctgcttgagttgattactggccggaaggccattgacagtaccagaccacatgtagaacaaaaccttgtctcatgggcgcgacctcttttcaacgacaggcggaagctcccaaagatggctgacccGgggctggagggacgatatccgatgcgcgggctctaccaagcgctcgcggtggcatcaatgtgcatccagtcggaggccgcgtcccgacctctcatcgccgatgtcgtgaccgcgctctcctacctggcgtcccagaagtacgatcccaacacgacgccgtcctcaaagaaggccggcggtggcgaggccgggagggcgctgtccaggaacgacgaggcgggcagctccggccacaagtcgccgtcgagcaaggactCcccccgggagcagcagctCccggggatcctcaacgacagggagaggatggtggcggaggcgaagatgtggggggagaactggcgggagaagaggcgcgccgccgccaccacctccagcaatgcccaggtgagcctggattcgcctaccgaaaccggttaa
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| Protein seq | MGCFPCFDSRMGEEEEEELYYGKGGARGGGNGGGALSAAAAAASSSSGVGGGGWEGTSTAAPRVEKISAGARGRGNATVKKELSALKDANGNVISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVEVLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKVPLDWNTRMKIAAGAAKGLEYLHDKAQPPVIYRDFKSSNILLGEDFHPKLSDFGLAKLGPGGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRKAIDSTRPHVEQNLVSWARPLFNDRRKLPKMADPGLEGRYPMRGLYQALAVASMCIQSEAASRPLIADVVTALSYLASQKYDPNTTPSSKKAGGGEAGRALSRNDEAGSSGHKSPSSKDSPREQQLPGILNDRERMVAEAKMWGENWREKRRAAATTSSNAQVSLDSPTETG |
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| Function | Serine/threonine-protein kinase PBS1 [UniProtKB/Swiss-Prot:Q9FE20] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0011560 | OsLima_04g0011560.01 | Chr04 | 20777679 | 20782989 | + | NAM | ||
| CDS seq | atgggttgcttcccgtgcttcgattcgaggatggggGAggaggaggaggaggagctgtactacgggaaggggggagcgcgcggcggaggcaatGggggtggcgctttgtcggctgctgctgcggcggcgtcgtcgtcctccggcgtcggcggcggtgggtgggaggggacgtctacggcggcgccgcgcgtcgagaagatctccgcaggggctaggggGAgaggcaatgccaccgtgaagaaggagctctcggctctcaaggatgccaatggcaatgtcatctccgcgcagacgttcaccttccgccagctcgccgcggcgacgaggaacttcagggaggagtgcttcattggggaaggagggtttGggcgcgtttacaagggccggttggacggcactggccagattgttgctataaaacagctcaatagggatggtactcaaggaaacaaagaatttctagtggaggttctcatgcttagtttgctgcatcatcaaaaccttgttAatttggttggttattgcgccgatggagatcaacgccttctTGtgtacgagtacatgcccctcggatcattggaagatcatttgcatgatctccctcctgataaggttcccttggattggaacactaggatgaaaatcgcagcaggtgcggctaaaggtctggagtaccttcatgacaaggctcaaccaccagttatatatagggacttcaagtcatcaaatattctattgggcgaggatttccatccaaagctttcagactttggtcttgctaaattgggtccCGgtggtgacaagtctcacgtctctacacgtgtgatgggaacatatggatattgtgctccggaatatgctatgacgggacagcttacagttaaatcggatgtttatagcttcggagtagtcctgcttgagttgattactggccggaaggccattgacagtaccagaccacatgtagaacaaaaccttgtctcatgggcgcgacctcttttcaacgacaggcggaagctcccaaagatggctgacccGgggctggagggacgatatccgatgcgcgggctctaccaagcgctcgcggtggcatcaatgtgcatccagtcggaggccgcgtcccgacctctcatcgccgatgtcgtgaccgcgctctcctacctggcgtcccagaagtacgatcccaacacgacgccgtcctcaaagaaggccggcggtggcgaggccgggagggcgctgtccaggaacgacgaggcgggcagctccggccacaagtcgccgtcgagcaaggactCcccccgggagcagcagctCccggggatcctcaacgacagggagaggatggtggcggaggcgaagatgtggggggagaactggcgggagaagaggcgcgccgccgccaccacctccagcaatgcccaggtgagcctggattcgcctaccgaaaccggttaa
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| Protein seq | MGCFPCFDSRMGEEEEEELYYGKGGARGGGNGGGALSAAAAAASSSSGVGGGGWEGTSTAAPRVEKISAGARGRGNATVKKELSALKDANGNVISAQTFTFRQLAAATRNFREECFIGEGGFGRVYKGRLDGTGQIVAIKQLNRDGTQGNKEFLVEVLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKVPLDWNTRMKIAAGAAKGLEYLHDKAQPPVIYRDFKSSNILLGEDFHPKLSDFGLAKLGPGGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRKAIDSTRPHVEQNLVSWARPLFNDRRKLPKMADPGLEGRYPMRGLYQALAVASMCIQSEAASRPLIADVVTALSYLASQKYDPNTTPSSKKAGGGEAGRALSRNDEAGSSGHKSPSSKDSPREQQLPGILNDRERMVAEAKMWGENWREKRRAAATTSSNAQVSLDSPTETG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.217825 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0393900 | RBH | 0.362052 | 0.000000 | 1.074381 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32310 | RBH | 0.238473 | 0.000000 | 0.269376 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0393900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011590 | RBH | 0.0 | 3.775356 | 2.365004 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012380 | RBH | 0.0 | 2.072073 | 0.910667 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012070 | RBH | 0.0 | 11.823811 | 2.144458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011740 | RBH | 0.034351 | 0.179043 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012000 | RBH | 0.714680 | 9.761103 | 4.633727 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0307800 | RBH | 0.8891475 | 2.129108 | 3.38646 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010910 | RBH | 0.046539 | 0.486010 | 0.111299 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0304900 | RBH | 1.471296 | 1.5773925 | 6.3325585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018720 | RBH | 0.324837 | 0.278531 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011160 | RBH | 0.0 | 2.175918 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011180 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011680 | RBH | 0.088703 | 0.634170 | 0.366083 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011910 | RBH | 0.0 | 3.260993 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011100 | RBH | 0.0 | 1.572399 | 2.448317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011080 | RBH | 0.0 | 5.200906 | 3.246101 |
