Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0018720 | OGI:02053970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:19796951-19801360 | ||||||||
| Gene Symbol | RLCK72, OsRLCK72, OsPBL1 | ||||||||||
| DNA seq | cctcctcctcctcgatcccctcgccgcgaagatccgatcccgagcacgagcagcacaccgatcggtgggtggcctcctccggcagcctgaggggtggcgggaatggcggcgatggccctctgacgcgacgcgcgcctttctctggcttttggctgtggtgggtgcttgtgggtggagagagagagggagagggagagagagatgggctgcttctcgtgcttcgactcgcccgcggaggagcagctgaaccccaaggtgggagggccgtacggcggcggctcctcctcctccgccgccgcggccgcgtacggcggcggcggcggttccggcgctggtcggcatggggagaggggcggtggttacccggacctgcaccaccaccaccagcagcagcagctgcccatggcggcgccgcgcgtcgagaagctctccgcaggtgcgtccgttactccctccgttcgcgttgggttgagttggggtggatctccgggcggcggcggcggttggtggggatcggatccgcgtcggggggacacggattcggtccttccttttccacgcctcctttgatctgattttagtattccttctcgtgtttcgtgatctctgcctaccgaattaccgcaatttgtcctgcaaaatttgtccagaaagcataactatcttgcgctgtttgatatgtagatgctgttggggttagttcatctacttcagatcattctgaaatgaaaaaaaatatatggtattatatgggagatgaattgatagaccgataggacaaggcctatgctacattcagactgtttatttggactctgtagttgtaaattctcgctgtcgcgtgaacatactgattagcttagtttttttttctcatgttttggtcaacatgggcaggggctgagaagacgagggtgaagagcaatgcaatactaagggaaccttctgcgcccaaggatgccaatgggaatgtaatatcagcacagactttcaccttccgagaacttgcgaccgccaccaggaatttcaggccagagtgcttcctgggcgaaggaggctttgggcgcgtttataagggccgcctcgagagcactggccaggtaacttattttggcaaatgggtatatgcttcattcttgcattcgcctgtggagaactgaacaaccggaaaattgcactgttgtgaaatctttactgttcacttttgtttgtctaagatctacgttctgaactgtttacaggaatgagaaatgaccatgttgagcaactgtttatttcatcttgtttgtttatgcattataatactatgctgctccctctggtcgtaatacatgtcattttggcctgggccgccttttctctttttaaatatatttgtcaaacccattaaattataggactatgcaagtacgttgaaatgcaaatcttctcatatgattttctttatccagtttaattattcagaaatattactatacccagaagttttgaaactttgacatgatgcttgtccaaaatacaagtatttctgaccggaggaagtagtaataactagtaagtgcaattttaggcaacaaggatctagtgttgtatgttcagtgtgttgtattgaaaaattaagagcaatatgattgaagcaccaaacttcttctaaattaaaattagtttaaaagaagtatgatgattgaagtccctttttcgtcattgcaggttgtggctataaagcagcttaatagagatgggcttcaaggaaacagagaatttctagtggaagttctaatgctcagtttgttacatcatcaaaatcttgttaatctgattggctattgtgctgacggagatcaacgtcttcttgtttatgaatacatgcactttggatcattggaagatcatttgcatggtacgaattctatgtttattccctgtagagatactgttttgcatatgaccacaacctgtaaattttctgttaatggtttctgtgtctgtacctgcaatactgtcctctgtcacatgtttccttaggtacagattgtccatcagcgattctatccatgcttttctatctgtgctctttatgtggaagaattagtgtccatgattattgtttttcaatatcggcaaatgtttatgtggtggtagactagtatttcattacttagccctaaaaatgtcaccatttgcattaacctgctccctgttgaagtgttgacattttgtctcttccaagggcctaaaataggcttgtaagagtggcaaatagttaatttttccctaaaatggtgcatgacagcataatgtgagtactatgtttgtcatgttttacagttcgctcgcatttctcatctgtgtgtactgtaattttcagctgcaatttttagatgtgtttggctatttgttgtaagttaaataaaagtcgtaaaacctatggagttacttataaagttatgtggagttgttggtctgcatataccaaaaaattacttataaagttatgtggtctactgaaaatggttcgtgatgtaaaaaccaatgaaatatttttagtcaatgatctatggaaggtgtaatattttttatgtcttgttacttctcaaggttctcttatgttcagaaattgtaccctttaactgtattgtgtgagtctaatatgtgattttgaattaagtgtcgttgatataaatatgtatgaataatgaccgtactaaacttcaataaattgtttatgtggtatagatctacctcctgataaggaagcattggattggaacacaaggatgaaaattgcggctggtgctgctaagggactagagtaccttcatgacaaagcaaatccaccagttatttatagagacttcaagtcatcaaacattctcttagatgagagtttccatccaaagctgtctgactttggtcttgcaaagttgggtcctgttggtgacaaatctcatgtctctactcgtgtgatgggaacatatggatattgtgctcctgagtatgctatgacaggacagttgacagttaagtctgatgtatatagctttggagttgtgttgcttgagttgattactggtcgtcgggcgatcgacagcactaggccacatggggagcaaaatcttgtctcatgggtaagctatgttctgattatttaggagcacatgctatctatatatgctaataacctgaaatgatttatctgtctagtatctcctaagtaattgtttggatcctgacatgtcgcataccatcaatatgtttggtagtagatctaactaatatctgctgcatttcatcagaattaaaacatcttgaaaaatagctcataaagataagatatttcctggttactttctggaactgaaaatacaaaagcaaatattgagtaaattattatgtcttgatgtccaccttccaaggaacggatgacatattagatgttgtaagctacatctatgatttcctgtcctccatgcttatactggtcaacatactttgatgggctagagcagatcatgtattgtgaggctaaatgttttttttttttgggggggggggggtgagaagaggctaatgacttgacccatgtactcacaatatttcatattaactgccaggcacgacctcttttcaacgacagaagaaagctcccaaaaatggctgacccaagactggagggacgataccccatgcgtggactttaccaagcacttgcagtggcatctatgtgcattcagtcggaggctgcgtcgcgtccacttattgcagatgttgtgactgctctttcctacctggcatctcaatcatatgaccctaatgcggctcatgcttcaagaaagccaggtggcgatcagcgaagcaaggttggcgagaacggcagggtagtctccaggaacgacgaagccagcagctctggccacaagtcaccaaacaaggacagggaggattccccgaaagagcccccaggtatcctgaacaaggatttcgacagggagcggatggtggcggaggcaaagatgtggggcgacagggaacggatggtggctgaggcaaagatgtggggtgatagggagcggatggtagccgaggcaaagatgtggggcgagaattggcgggataagagacgtgcgatcgagaacgggcaggggagtctggattccccaactgaaaatggctaggagcagggcagcgaggggttgatccatccacccatgtatgtctgtttatttccaacactatttgctttcctgtggcagggagaggggagggagggacggtgggttagatgtacatttctagagaaaaagagagaagaaacgggagctttgaactggatagtgaattcatgttgttgtacttgtaaattctcagaaatttttgtgagaatgaaaggacacttttgagttccctttg
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| CDS seq | atgggctgcttctcgtgcttcgactcgcccgcggaggagcagctgaaccccaaggtgggagggccgtacggcggcggctcctcctcctccgccgccgcggccgcgtacggcggcggcggcggttccggcgctggtcggcatggggagaggggcggtggttacccggacctgcaccaccaccaccagcagcagcagctgcccatggcggcgccgcgcgtcgagaagctctccgcaggggctgagaagacgagggtgaagagcaatgcaatactaagggaaccttctgcgcccaaggatgccaatgggaatgtaatatcagcacagactttcaccttccgagaacttgcgaccgccaccaggaatttcaggccagagtgcttcctgggcgaaggaggctttgggcgcgtttataagggccgcctcgagagcactggccaggttgtggctataaagcagcttaatagagatgggcttcaaggaaacagagaatttctagtggaagttctaatgctcagtttgttacatcatcaaaatcttgttaatctgattggctattgtgctgacggagatcaacgtcttcttgtttatgaatacatgcactttggatcattggaagatcatttgcatggtacgaattctatgtttattccctgtagagatactgttttgcatatgaccacaacctgtaaattttctgttaatggtttctgtgtctatgagagtttccatccaaagctgtctgactttggtcttgcaaagttgggtcctgttggtgacaaatctcatgtctctactcgtgtgatgggaacatatggatattgtgctcctgagtatgctatgacaggacagttgacagttaagtctgatgtatatagctttggagttgtgttgcttgagttgattactggtcgtcgggcgatcgacagcactaggccacatggggagcaaaatcttgtctcatgggcacgacctcttttcaacgacagaagaaagctcccaaaaatggctgacccaagactggagggacgataccccatgcgtggactttaccaagcacttgcagtggcatctatgtgcattcagtcggaggctgcgtcgcgtccacttattgcagatgttgtgactgctctttcctacctggcatctcaatcatatgaccctaatgcggctcatgcttcaagaaagccaggtggcgatcagcgaagcaaggttggcgagaacggcagggtagtctccaggaacgacgaagccagcagctctggccacaagtcaccaaacaaggacagggaggattccccgaaagagcccccaggtatcctgaacaaggatttcgacagggagcggatggtggcggaggcaaagatgtggggcgacagggaacggatggtggctgaggcaaagatgtggggtgatagggagcggatggtagccgaggcaaagatgtggggcgagaattggcgggataagagacgtgcgatcgagaacgggcaggggagtctggattccccaactgaaaatggctag
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| Protein seq | MGCFSCFDSPAEEQLNPKVGGPYGGGSSSSAAAAAYGGGGGSGAGRHGERGGGYPDLHHHHQQQQLPMAAPRVEKLSAGAEKTRVKSNAILREPSAPKDANGNVISAQTFTFRELATATRNFRPECFLGEGGFGRVYKGRLESTGQVVAIKQLNRDGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLEDHLHGTNSMFIPCRDTVLHMTTTCKFSVNGFCVYESFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHGEQNLVSWARPLFNDRRKLPKMADPRLEGRYPMRGLYQALAVASMCIQSEAASRPLIADVVTALSYLASQSYDPNAAHASRKPGGDQRSKVGENGRVVSRNDEASSSGHKSPNKDREDSPKEPPGILNKDFDRERMVAEAKMWGDRERMVAEAKMWGDRERMVAEAKMWGENWRDKRRAIENGQGSLDSPTENG |
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| Function | Serine/threonine-protein kinase PBS1 [UniProtKB/Swiss-Prot:Q9FE20] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0018720 | OsLima_02g0018720.01 | Chr02 | 19796951 | 19801125 | + | NAM | ||
| CDS seq | atgggctgcttctcgtgcttcgactcgcccgcggaggagcagctgaaccccaaggtgggagggccgtacggcggcggctcctcctcctccgccgccgcggccgcgtacggcggcggcggcggttccggcgctggtcggcatggggagaggggcggtggttacccggacctgcaccaccaccaccagcagcagcagctgcccatggcggcgccgcgcgtcgagaagctctccgcaggggctgagaagacgagggtgaagagcaatgcaatactaagggaaccttctgcgcccaaggatgccaatgggaatgtaatatcagcacagactttcaccttccgagaacttgcgaccgccaccaggaatttcaggccagagtgcttcctgggcgaaggaggctttgggcgcgtttataagggccgcctcgagagcactggccaggttgtggctataaagcagcttaatagagatgggcttcaaggaaacagagaatttctagtggaagttctaatgctcagtttgttacatcatcaaaatcttgttaatctgattggctattgtgctgacggagatcaacgtcttcttgtttatgaatacatgcactttggatcattggaagatcatttgcatggtacgaattctatgtttattccctgtagagatactgttttgcatatgaccacaacctgtaaattttctgttaatggtttctgtgtctatgagagtttccatccaaagctgtctgactttggtcttgcaaagttgggtcctgttggtgacaaatctcatgtctctactcgtgtgatgggaacatatggatattgtgctcctgagtatgctatgacaggacagttgacagttaagtctgatgtatatagctttggagttgtgttgcttgagttgattactggtcgtcgggcgatcgacagcactaggccacatggggagcaaaatcttgtctcatgggcacgacctcttttcaacgacagaagaaagctcccaaaaatggctgacccaagactggagggacgataccccatgcgtggactttaccaagcacttgcagtggcatctatgtgcattcagtcggaggctgcgtcgcgtccacttattgcagatgttgtgactgctctttcctacctggcatctcaatcatatgaccctaatgcggctcatgcttcaagaaagccaggtggcgatcagcgaagcaaggttggcgagaacggcagggtagtctccaggaacgacgaagccagcagctctggccacaagtcaccaaacaaggacagggaggattccccgaaagagcccccaggtatcctgaacaaggatttcgacagggagcggatggtggcggaggcaaagatgtggggcgacagggaacggatggtggctgaggcaaagatgtggggtgatagggagcggatggtagccgaggcaaagatgtggggcgagaattggcgggataagagacgtgcgatcgagaacgggcaggggagtctggattccccaactgaaaatggctag
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| Protein seq | MGCFSCFDSPAEEQLNPKVGGPYGGGSSSSAAAAAYGGGGGSGAGRHGERGGGYPDLHHHHQQQQLPMAAPRVEKLSAGAEKTRVKSNAILREPSAPKDANGNVISAQTFTFRELATATRNFRPECFLGEGGFGRVYKGRLESTGQVVAIKQLNRDGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMHFGSLEDHLHGTNSMFIPCRDTVLHMTTTCKFSVNGFCVYESFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVLLELITGRRAIDSTRPHGEQNLVSWARPLFNDRRKLPKMADPRLEGRYPMRGLYQALAVASMCIQSEAASRPLIADVVTALSYLASQSYDPNAAHASRKPGGDQRSKVGENGRVVSRNDEASSSGHKSPNKDREDSPKEPPGILNKDFDRERMVAEAKMWGDRERMVAEAKMWGDRERMVAEAKMWGENWRDKRRAIENGQGSLDSPTENG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0018720 | OsLima_02g0018720.02 | Chr02 | 19797223 | 19801360 | + | IsoSeq | ||
| CDS seq | atgtatgtctgtttatttccaacactatttgctttcctgtggcagggagaggggagggagggacggtgggttagatgtacatttctagagaaaaagagagaagaaacgggagctttgaactggatagtgaattcatgttgttgtacttgtaaattctcagaaatttttgtgagaatgaaaggacac |
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| Protein seq | MYVCLFPTLFAFLWQGEGREGRWVRCTFLEKKREETGALNWIVNSCCCTCKFSEIFVRMKGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.324837 | 0.278531 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0513000 | RBH | 0.977842 | 2.357279 | 5.290780 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g30900 | RBH | 0.659711 | 1.581734 | 1.360420 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0513000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018670 | RBH | 0.359299 | 7.686375 | 6.845585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018840 | RBH | 0.318547 | 4.930459 | 2.018756 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018770 | RBH | 1.133128 | 13.925084 | 6.731449 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018540 | RBH | 0.076730 | 0.406061 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018480 | RBH | 5.266391 | 20.497852 | 13.286705 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0307800 | RBH | 3.009004 | 17.996792 | 12.547238 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018200 | RBH | 0.141878 | 0.908821 | 1.142222 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0326200 | RBH | 6.0513125 | 23.325697 | 9.183285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011560 | RBH | 0.0 | 0.217825 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018430 | RBH | 0.417588 | 17.085270 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018850 | RBH | 1.708248 | 31.582336 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018600 | RBH | 0.260524 | 1.824277 | 1.552595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018360 | RBH | 0.067873 | 7.225446 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018780 | RBH | 0.475485 | 9.770587 | 1.890688 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018470 | RBH | 1.118224 | 21.559324 | 9.564419 |
