Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0011230 | OGI:04044150 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:20506191-20508230 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggatttccagaagaagatgccattcgtttgatgagaaataaaaaggaatatcgagaattcgcgtggctgaagctgaagcaacaactttcgaagtaacagaaagaaaagcaacaactggagtgggggagtcagagtcgaaaagaggattcctcgcttctttctctcatgcaaaactgtgcatgagacttttatctcgcacggctcctaagtgataaaagaaagaagaacttgtcttctttcttttttgattaccttcctcgcgtatgtataagaccgaatccattcttttttgaaatcgatttcgaaaaagaactactaatccttaacttttcgaggaatccttcatcagtggttgtgaatgactgactttttcaatcctttcgaccttggttccgtagaagcaagtcagaaagattgagaaatagaaccatctgatttgattcgttcccaatagccatgagatgatcatcttagggtgatccttttgtcaacggatgctcctattacactcatagtctctaaaggatgagaacccactatgtagcatctacgtcgataattcaagcattgtatacgttattagtccgattctttgtaggaactacccgtaataacgagcttgcaaaatggatttgtttatcataaagagattcgttgttcctgaccctgcttcaccttaattgttatttgaacaaaaaggtcacaataaacttttggtaaaagttctgtcttggtcggagcggggatagcatttctcttctgcatatctttggagttttacaaaacccaaacacctcagagatagatatagaggtaggaatttgtcgaacgaaccacactccttcgtagacgtcaggagtccattgatgaaaaggggctagggaaagcttgaacccaagtcctacagtaatggatataagcgcaattgaaattcctggggagttatacatttgtgtattgataagatcgttcacaatttcttgaagctcgatctcccacccagatgaaccatatagccaagagaaaccgtgaaccagaatagaagagcttgccccacccatgagtaaatatttcatagtagtctcattagaccgtagatctctcttggtatatccagacaataggtaggaacataaactgaaacattctggagctacaaagatagttattaaatcgttagcaccacataaaacattcccccaagagtagctgttaatacgaataatagaaactctgttatagccatttatgtacattcaatgtactctacggatagaggaatacataaagttgaacataataaaataagaaattgaaagatttcgttgaaattgttcgtttggaaatttcccgaaaagctaattataggttcttctctccatcagaacaatagggccgttatgcttattactaaacttgttgaagagatgaaatagatccaaggtctatctttttgatcagaggttaaatcgatcatcaaaagaagaattaggccaaaaattaggatacattctgggaaaatgaaacttccctggaagagaagcaaatgaaacgctttcattaaaattctcgtagaatcgagaatgaagttttcattctgtacatgccagatcatgaattagtaactgcatccaatctccgaaaagtcccgattgtttcgatttttggaatgggatatttacggaatccccatgaataggatcaaaccttattccatgctatttccataagattcctcttccttattcttaagcaagcccccgagagggcttagttgatcatgatttctgttttctctttcttttcctttttgtttgtttcgagaaagatatcgtccgattctccttctattgattcttttccgatcgagatgtatggatccatgtgtctacatacctagattctgttcatggattaacgaaaatgtgcaagagctttatttgcctctgccattctatgagtcgcttcctttttgcgtatggcacctccaccccctttagcagcatctactaattcggaacttaatttgaaagccat
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| CDS seq | atggctttcaaattaagttccgaattagtagatgctgctaaagggggtggaggtgccatacgcaaaaaggaagcgactcatagaatggcagaggcaaataaagctcttgcacattttcggaagtttcattttcccagaattttatgttcctacctattgtctggatataccaagagagatctacggtctaatgagactactatgaaatatttactcatgggtggggcaagctcttctattctggttcacggtttctcttggctatatggttcatctgggtgggagatcgagcttcaagaaattgtgaacgatcttatcaatacacaaatgtataactccccaggaatttcaattgcgcttatatccattactgtaggacttgggttcaagctttccctagccccttttcatcaatggactcctgacgtctacgaaggagtgtggttccttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctag
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| Protein seq | MAFKLSSELVDAAKGGGGAIRKKEATHRMAEANKALAHFRKFHFPRILCSYLLSGYTKRDLRSNETTMKYLLMGGASSSILVHGFSWLYGSSGWEIELQEIVNDLINTQMYNSPGISIALISITVGLGFKLSLAPFHQWTPDVYEGVWFLQPREFSIFLFISHQTNGIFFWKS |
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| Function | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic [UniProtKB/Swiss-Prot:P0CD17] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0011230 | OsLima_04g0011230.01 | Chr04 | 20506191 | 20508230 | - | NAM | ||
| CDS seq | atggctttcaaattaagttccgaattagtagatgctgctaaagggggtggaggtgccatacgcaaaaaggaagcgactcatagaatggcagaggcaaataaagctcttgcacattttcggaagtttcattttcccagaattttatgttcctacctattgtctggatataccaagagagatctacggtctaatgagactactatgaaatatttactcatgggtggggcaagctcttctattctggttcacggtttctcttggctatatggttcatctgggtgggagatcgagcttcaagaaattgtgaacgatcttatcaatacacaaatgtataactccccaggaatttcaattgcgcttatatccattactgtaggacttgggttcaagctttccctagccccttttcatcaatggactcctgacgtctacgaaggagtgtggttccttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctag
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| Protein seq | MAFKLSSELVDAAKGGGGAIRKKEATHRMAEANKALAHFRKFHFPRILCSYLLSGYTKRDLRSNETTMKYLLMGGASSSILVHGFSWLYGSSGWEIELQEIVNDLINTQMYNSPGISIALISITVGLGFKLSLAPFHQWTPDVYEGVWFLQPREFSIFLFISHQTNGIFFWKS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0473025 | RBH | 1.737670 | 1.678752 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0473025 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011230 | RBH | 2.622667 | 0.000000 | 1.686038 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012010 | RBH | 6.275746 | 4.050710 | 12.788627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011710 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011380 | RBH | 4.064092 | 0.481653 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007710 | SBH | 415.751404 | 59.376846 | 263.274261 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0304100 | RBH | 20.0332205 | 5.244513 | 1.9536625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010570 | RBH | 1.864858 | 0.000000 | 1.337671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227200 | RBH | 681.4729615 | 126.2577975 | 70.1163715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010820 | RBH | 84.334839 | 160.096893 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010850 | RBH | 469.095734 | 172.553024 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011350 | RBH | 0.013108 | 0.002120 | 0.005225 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011550 | RBH | 3.908892 | 1.116387 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010710 | RBH | 1.467540 | 0.000000 | 1.791895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025752 | RBH | 308.381317 | 214.204834 | 398.229340 |
