Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0012010 | OGI:04044150 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:17689372-17693922 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctataatttcgcacataaggggttatttcttggtttcgtccagtcattaataacttgactatttttagataatagtagatagaaagaacgctcgtaaggagtcctattgaaaccaagaaatataggtctgcttgccatccacaccagaatagatagagttttccgaagaaaactgctagtggaggaaggcctcctagggataagagacagggctaaagagagagccaaaaaaggatctttcgtgtataatcctgcataatctcgaatgttatcagttccggtacgtagaccaaataatacaatgcaagcaaaagttcctagattcatggagatatagaaaagcatataagttatcatgcttgcatatccatcatttgagtctccaacaattattccaataattacatatccgatttgccctatggacgaatatgcaagcatacgtttcatgcttgtttgagtaatagcaaggagatttcccaatatcatgctaagaatagctaggatttccagaagaagatgccattcgtttgatgagaaataaaaaggaatatcgagaattcgcgtggctgaagctgaagcaacaactttcgaagtaacagaaagaaaagcaacaactggagtgggggagtcagagtcgaaaagaggattcctcgcttctttctctcatgcaaaaccgtgcatgagactttcatctcgcacggctcctaagtgataaaagaaagaagaacttgtcttctttcttttttgtttaccttcctcgcgtatgtataagaccgaatctattctttttcgaaatcgatttcgaaaaagaactactaatccttaacttttcgaggaatccttcatcagtggttgtgaatgactgactttttcaatcctttcgaccttggttccgtagaagcaagtcagaaaggttgagaaatagaaccatctgatttgattcgttcccaatagccatgagatgatcatcttagggtgatccttttgtcaacggatgctcctattacactcgtagtctctgaaggatgaaaacccactatgtagcatctacgtcgataattcaagcattgtatacgtcattagtccgattctttgtaggaactacccgtaataacgagcttgcaaaatggatctgtttatcacaaagagattcgttgttcctgaccctgcttcaccttaattgttatttgaacaaaaaggtcacaataaacTtttggtaaaagttctgtcttggtcggagtggggatagcatttctcttctgcatatctatggagttttacaaaacccaaacacctcagagatagatatagaggtaggaatttgtcgaacgaaccacactccttcgtagacgtcaggagtccattgatgaaaaggggctggggaaagcttgaacccaagtcctacagtgatggatataagcgcaattgaaattcccggggagttatacatttgtgtattgataagaccgttcacaatttcttgaagctcgatctccccccagatgaaccatatagccaagagaaaccatgaaccagaatagaagagcttgccccacccatgagtaaatatttcatagtagcctcattagaccgtagatctctcttggtatatccagacaataggtaggaacataaactgaaacattctggagctacaaagatagttattaaatcgttagcaccacataaaaacattccccctagagtagctattaatacgaataacagaaactctgttatagccatttatgtacattcaatgtactctacggatagaggaatacataaagttgaacataataaaataagaaattgaaagatttcgttgaaattgttcgtttggaaatttcccgaaaagctaattataggttcttctctccatcggaacaatagggccgttatgcttattactaaacttgttgaagagatgaaatagaaccaaggtctatctttttgatcagaggttaaatcgatcatcagaagaagaattaggccaaaaattaggatacattctaggaaaatgaaacttccctggaagagaagcaaatgaaacgctttcataaaaattctcgtagaatcgagaatgaagttttcattctgtacatgccagatcatgaattagtaactgcatccaatctccgaaaagtcccgattgtttcgatttttggaatgggatatttacggaatccccatgaataggatcaaaccttattccatgctatttccataagattcctcttccttattcttaagcaagcccccgagagggcttagttgatcatgatttctattttctctttcttttcctttttgtttgtttcgagaaagatatcgtccgtttctccttctattgattcttttccgatcgagatgtatggatccatgtgtctacatacctagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccattctatgagtcgcttcctttttgtgtatggcacccccaccccctttggcagcatctactaattcggaacttaatttcaaagccatatttcgacccggacgcttttgggatgcttctaataaccaacgaatggcaagtgctcttccttgtttagatcctatttcaatcggaactttccgcgtcgatccttttttattacgtcttgtttttactcctatattgggagttactctacatattgcttgacgtaaaaccaatagtggatttgtttctgtcttttgttgaatctttttcacggctcgatagagaatttgataagccaatgatttttttccgtctttcataatacggttaaccaccatgttaactaatcaattacgaaaaattggatcggattttgtagttcttttttctgcagtacctcaacgtgacatgagcgtgaaagaggttcaagaatccgttttctttttataagggctaaaagcgaatcacttatttttttggctttttgaccccatattgtagggtggatctcgaaagataggaaagatatccctccaagccgtacatacaactttcatcgaatacggctttccacagaattctatagggatctatgagatcgagtatggaattcagtttactcacttaaaattgagtatccgtttccctccttttcccgctaggatcggaaatcctgtattttccatatccataccatcaagtccttaggtttccgaaatagtgtaatggaaaaagaagtgcttcgaatcattgctatttgactcggacctgttctgaaaaagtcgaggtatttcaaattgtttgttgacacggacaaagtaagggaaaacccctgaaagaatttccatattgaccttggacatataagagttccgaatcgaatctctttagaaagaagatcttttgtctcatggtagcctgctccagtccccttacgaaactttcgttattgggttagccatacacttcacatgtttctagcgattcacatggcatcatcaaatgatacaagtcttggataagaatctacaacgcactagaacgcccttgttgacgattctttactgcgacagcatctagggctcctcgaataatgcgatatctcacaccaggtaaatccttaacccttcctccttttactaatactacagaatgttcttgtaaattatggccaataccaggtatataagcagtgatttcaaatccagaggttaatcgtactctagcaactttacgtaaggcggagttgggttttttggggttgatagtggaaaagtcgacacataagtcacccttcctgtccctctacagaaccgtacatgagattttcacctcatacggctcctcgttcaattctttcgaagggatccttttcctcgttcgagagtctccgcccttcttccactccgtcccgaagactaactaagaccaattgagtcacgttttcatgttctaattgaacacttttcatttatgattaaaggagaagattgttcttttaccaaacatatgcggatcaaatcacgtcttataataagaagaaatctttctcggtatcaatccccttgcccctcattctttgagaatcagaaggatccttttcgagtttccatttcttcatttggaatctgggctcttctatcttcgacttttttttttgctttattctttatttatttcatttcgatttttccctcttcctctatccctatcctctaggtacagcgtttgcatcaatagagaaccttttcctctgtatgaatctatattattccattccaatttcttcccgaaacttcccaagaaaaatcccgaattggatccaaaattgacgggttaatgtgagcttatccatgcggttaggcactcttcaaataggaatccattttctaactggctttcgtgctttggtgagtcgtctgagatcctttcgatgacctattttgtgttgaagggatatctatatgatccgatcgattgcataagacccgcggtagcaatagaacggggaaagtatacagaaaagacagttcttttcaatttcgattatctatatattagttcgtttctatt
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| CDS seq | atggtggttaaccgtattatgaaagacggaaaaaaatcattggcttatcaaattctctatcgagccgtgaaaaagattcaacaaaagacagaaacaaatccactattggttttacgtcaagcaatatgtagagtaactcccaatataggagtaaaaacaagacgtaataaaaaaggatcgacgcggaaagttccgattgaaataggatctaaacaaggaagagcacttgccattcgttggttattagaagcatcccaaaagcgtccgggtcgaaatatggctttgaaattaagttccgaattagtagatgctgccaaagggggtgggggtgccatacacaaaaaggaagcgactcatagaatggcagaggcaaatagagctcttgcacattttcgctactatgaaatatttactcatgggtggggcaagctcttctattctggttcatggtttctcttggctatatggttcatctggggggagatcgagcttcaagaaattgtgaacggtcttatcaatacacaaatgtataactccccgggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggagtgtggaatcctcttttcgactctgactcccccactccagttgttgcttttctttctgttacttcgaaagttgttgcttcagcttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctagctattcttagcatgatattgggaaatctccttgctattactcaaacaagcatgaaacgtatgcttgcatattcgtccatagggcaaatcggatatgtaattattggaataattgttggagactcaaatgatggatatgcaagcatgataacttatatgcttttctatatctccatgaatctaggaacttttgcttgcattgtattatttggtctacgtaccggaactgataacattcgagattatgcaggattatacacgaaagatccttttttggctctctctttagccctgtctcttatccctaggaggccttcctccactagcagttttcttcggaaaactctatctattctggtgtggatggcaagcagacctatatttcttggtttcaataggactccttacgagcgttctttctatctactattatctaaaaatagtcaagttattaatgactggacgaaaccaagaaataaccccttatgtgcgaaattatag
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| Protein seq | MVVNRIMKDGKKSLAYQILYRAVKKIQQKTETNPLLVLRQAICRVTPNIGVKTRRNKKGSTRKVPIEIGSKQGRALAIRWLLEASQKRPGRNMALKLSSELVDAAKGGGGAIHKKEATHRMAEANRALAHFRYYEIFTHGWGKLFYSGSWFLLAIWFIWGEIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGVWNPLFDSDSPTPVVAFLSVTSKVVASASATRILDIPFYFSSNEWHLLLEILAILSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALSLIPRRPSSTSSFLRKTLSILVWMASRPIFLGFNRTPYERSFYLLLSKNSQVINDWTKPRNNPLCAKL |
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| Function | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic [UniProtKB/Swiss-Prot:P0CC24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0012010 | OsKeNa_04g0012010.01 | Chr04 | 17689372 | 17692187 | - | NAM | ||
| CDS seq | atggtggttaaccgtattatgaaagacggaaaaaaatcattggcttatcaaattctctatcgagccgtgaaaaagattcaacaaaagacagaaacaaatccactattggttttacgtcaagcaatatgtagagtaactcccaatataggagtaaaaacaagacgtaataaaaaaggatcgacgcggaaagttccgattgaaataggatctaaacaaggaagagcacttgccattcgttggttattagaagcatcccaaaagcgtccgggtcgaaatatggctttgaaattaagttccgaattagtagatgctgccaaagggggtgggggtgccatacacaaaaaggaagcgactcatagaatggcagaggcaaatagagctcttgcacattttcgctactatgaaatatttactcatgggtggggcaagctcttctattctggttcatggtttctcttggctatatggttcatctggggggagatcgagcttcaagaaattgtgaacggtcttatcaatacacaaatgtataactccccgggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggagtgtggaatcctcttttcgactctgactcccccactccagttgttgcttttctttctgttacttcgaaagttgttgcttcagcttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctagctattcttagcatgatattgggaaatctccttgctattactcaaacaagcatgaaacgtatgcttgcatattcgtccatagggcaaatcggatatgtaattattggaataattgttggagactcaaatgatggatatgcaagcatgataacttatatgcttttctatatctccatgaatctaggaacttttgcttgcattgtattatttggtctacgtaccggaactgataacattcgagattatgcaggattatacacgaaagatccttttttggctctctctttagccctgtctcttatccctaggaggccttcctccactagcagttttcttcggaaaactctatctattctggtgtggatggcaagcagacctatatttcttggtttcaataggactccttacgagcgttctttctatctactattatctaaaaatagtcaagttattaatgactggacgaaaccaagaaataaccccttatgtgcgaaattatag
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| Protein seq | MVVNRIMKDGKKSLAYQILYRAVKKIQQKTETNPLLVLRQAICRVTPNIGVKTRRNKKGSTRKVPIEIGSKQGRALAIRWLLEASQKRPGRNMALKLSSELVDAAKGGGGAIHKKEATHRMAEANRALAHFRYYEIFTHGWGKLFYSGSWFLLAIWFIWGEIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGVWNPLFDSDSPTPVVAFLSVTSKVVASASATRILDIPFYFSSNEWHLLLEILAILSMILGNLLAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALSLIPRRPSSTSSFLRKTLSILVWMASRPIFLGFNRTPYERSFYLLLSKNSQVINDWTKPRNNPLCAKL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0012010 | OsKeNa_04g0012010.02 | Chr04 | 17691695 | 17693922 | - | IsoSeq | ||
| CDS seq | atggtggttaaccgtattatgaaagacggaaaaaaatcattggcttatcaaattctctatcgagccgtgaaaaagattcaacaaaagacagaaacaaatccactattggttttacgtcaagcaatatgtagagtaactcccaatataggagtaaaaacaagacgtaataaaaaaggatcgacgcggaaagttccgattgaaataggatctaaacaaggaagagcacttgccattcgttggttattagaagcatcccaaaagcgtccgggtcgaaatatggctttgaaattaagttccgaattagtagatgctgccaaagggggtgggggtgccatacacaaaaaggaagcgactcatagaatggcagaggcaaatagagctcttgcacatttt
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| Protein seq | MVVNRIMKDGKKSLAYQILYRAVKKIQQKTETNPLLVLRQAICRVTPNIGVKTRRNKKGSTRKVPIEIGSKQGRALAIRWLLEASQKRPGRNMALKLSSELVDAAKGGGGAIHKKEATHRMAEANRALAHF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.275746 | 4.050710 | 12.788627 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g024339T | RBH | 89.334984 | 81.793228 | 69.047310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g25002 | RBH | 69.485458 | 58.460217 | 18.249065 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0856850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011230 | RBH | 2.622667 | 0.000000 | 1.686038 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011710 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011380 | RBH | 4.064092 | 0.481653 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011620 | RBH | 39.217289 | 0.000000 | 18.126848 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0304100 | RBH | 20.0332205 | 5.244513 | 1.9536625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010570 | RBH | 1.864858 | 0.000000 | 1.337671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0300700 | RBH | 14.036849 | 2.024822 | 1.45574 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011230 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010820 | RBH | 84.334839 | 160.096893 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010850 | RBH | 469.095734 | 172.553024 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011350 | RBH | 0.013108 | 0.002120 | 0.005225 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011550 | RBH | 3.908892 | 1.116387 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010710 | RBH | 1.467540 | 0.000000 | 1.791895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010780 | RBH | 6.512164 | 0.000000 | 7.344314 |
