Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0010170 | OGI:04058700 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:19400945-19406120 | ||||||||
| Gene Symbol | WAK46, OsWAK46 | ||||||||||
| DNA seq | tcaacagccaagcaacttgacaatgttgggatggctaacacgacaaagtatgaccagctcttgcacaaactccatcttcctgctctcgtcaatctccttgcagttctttattgcgacggcaactccatctataacagccttataaactgttccctgccctccttccccaatgacatgtgccttgctgaagttatttgtggcaatctctatctcccctctcttgtagagggtgaacccatcatttccatctgctttcatcatttctagcaatatctggcctccatattgttgaaaaaactcatcagtctgtcttaatagagcctgtcgtttaattttttgtttgtgtcgaatcacttcccatcctaggaatccaaagaggacagccaatacactggcaacaacacctatggaaacagagatacatgattagcaaagtgttttgaaactgatatgcttaaacagagatcaagcagatcaagatgaggtaacaagttggaataaatgtgtaccaattgccagccttgttttcggtgataagaggtcttcccggcatcctccttgaattgtcgcatttccactactaccagcatgacacagacaatcgaaactgccaggtttattgtagcaatctccatagcaagggtaactctctccatgttgacattcattaatatctacaatcaaatgaaaagttttttagaaaaatatagcgttacatgcatctataaaaacagggtccttttacagtacaaaagctaatcactaatgagctgattagcttttagcccttgttcatttttctcacggtcactcaccatgatccccttgccgaagtacccatgcaaaaaaaatatgcaattatctaacaaacttgaatttgtataggtatttttttAaaaaaaaggattaataattttgtaaaataaaaaatgaatccggcaatcttgaggcaggaaacagtgggaaaaaataaaatctaaaatggaaaaaaaatgaaaatatgaaacaaagactagaaatatttttaggaaaaaaaaacagccttgatattcatccgttagctgaaaattccaaaacccatcagtcgactaataacaaaatacagccaaaacttgaattccaaaatcatcaccacgcttctctctcatgcaaaatacagccaaatggtagttccaaaccagcaatggtgacaacaaatgtatatacgtcttctactgctatggaccttaaaagcgacggcgacggattagaTtttggggtatctgttaggggtaggatcagggattgaaattttgctttgaaatttcgggaattttggaacccagttacgcaactatctcacctgaagtttttgattttttaaagtttaatgaatttggttagaatttattcaaatctatctatctatctatctatctatctattatctatctattatatactaaaagtccattaaacttcctagaaaccctcctaagccgccacataggacccatggaaacgctcctacgccgccatatggcgatctaataaattatagaaattctaaaaaaatattagccatcgatttttatttaatatatggtaggcccattattttcaaccattagatctattgtaaaacataccaattaaaattatctccaaaacccaatattgccaatctttatgtgcatgtgCAcataagtacggacgtttagtaggtattccaaaaaaaaaaggtacgtacatatattccaaggtaaaaaagtacgtacatatgtacataagcaggccgggctaacgacatctttttattttcttttttttcactcggataaaaaacCAAActgcccatattaactatgctctacttacgttgtaaaaatataggcacatatatgtcatcgaaacaccaatgagaagcaaaaattaattaaagtatatattatgtaatagttaaattagacttgcattttttaaaataaaaacaattctaattgtgactagcaattctcaaaagttacctactccttataaaaaataatgatatgtcaaactgatatcactaaatttatcatgaatgtgttttctctattcgtataatatttaaatatcaaaaattgtatatattcttttcacaccgtactgatctactttatcttctacttatgcttcatttgatctagctggatggctgtaactggatggctgagcttattcaggatacatgaaacgacacatatcattagtgcaagattaattaaatattgaatataataaagccaaaatagatttatttaatttttaaacttttatataaaatatattttaattatacgcaagttgcttttaaatatatacgatgtaggttatggttgtcaatttaattatagtgcataaaatggttcagatggatttagatattattatcaaaagatatgtcttttgtaataattcctatatcaatgggtagataactgggaaaacaaggagcaaccaatctgataagtactctagaacttattgcttatttactaaaatgtttaatgtgtagtatataatatactttatgaataaaaaaatatcctaatatataatcatatgccaccacttatccataagtatataaatactatccactaatcgtcaagtcatattgcttacgaggtattcatgcatagtgcacctaataattagctaccatccaacgagcacttatgtcatgaagcaccatatataacggactatgctaagtggagaactatcaacaaatgataggtaaagtaaagcatgccaccaagccacagcaaataataatcgactacaagtatattgtcagtataagcaatagaatttctacacttctacaagaactcttaatatatcacgtaatagatctcataaactagaaaaaaagtataagaaaaaatataaaaaagaaaatatctggtcatcaatttacacttcaactggtagatccattattttcaaccattatattggatatattccagctaaaaaccaactaatctctccctacgtacgtacctatacaagagatgttaaaaaggaaaaaaaaagaagaatgtatatatgatctgctccgtctggttgtttttttttCtttctttgcagcactaaagttttcctcaaattatgcatatatatatagtgaaactctttacgatgttatcgaaaaagtcatgccaccgtggcatcgcttcatgccatcccacaaaacttttttaaaatatttttttaactaatgatctaaaacgaaatcatagacactcatataaatatgtgcacagccatcctacgaatatgcgcagtactattcacaaaaaaaatacatacgtacaataaaaaatgtcgcatggaaacctattatatccttatataagtatgtcattctcatctaaatagtgttgacaaaattagcacaaataattttgacaataTGAATTATTCCTTCGAATATTACCCATGAATATACGTAGGTGACTTAGATGTATAGTAAAAGAAAAAAATCTAAACCCATATTAACCTGTATGTTTACGAAAGATGGTGATATGCGACTTTATGTATAGCCATGACAAAGTGAAATTTGTTTGAATATAATAGATATTATCAATTAGTATATCAAAGTTTATAATTTATTTCACATAATAAATATTTCTTATTTTATATTATAAGGTAATCTATGGTTCTTAAAATAAATACGGTAACATATGGTTTATTTTAGTATTCTTTCTATAAACAAAAAAATAAATTGCCCGCGCATCTGCGCGGGCTTCCTTTCTAGTTCAGTTAAAATTTAAATAATTTCGTGCTCAAAAGGTTCAGAAATAGCGAAAATTACGGTGACTCTCTAAATTCCAGTCTTTTACAAAATTGAAAACCCTGGGTACGCTGGTGCCATCAAGATTTCGTTGGGGGGGGTGGGGGGGGAGGTTAGAGGTAGTTCATGATACGGTAGAGTAGAGGGAAACTGCTTAATTATATAACCAAATTAAAGGTTGAACGCCCTGATATATATATAAACAAAAAGTTTAATGAAACATACTTAATTAAGAAAGTTCTTTGTACGCACCTCACTGCATGCTACAGCTATGTCATACTAATTGTTAATTAGAAATACTCGAGAATAATCGCAATTTCAAAATTTTGGCTATATAATTGATTGGAGAGTAGAGGAAAATTTACCTTGACAGCCGTTGGGACCTTGAAGGTAAGGATTGCCTTGGTACCCATCTTGGCAGCTACAGATGTAGCCTGTTCTATCGAAGGAGTCGGTACACTTAACGTTGTCACTTTTGCAAGCGTACGACTCGAGATTTACCCTGGCTTCCTTGCAAGTGTTGGCTGTCTGGATAGTCCAATCAAGCACCACTGGCGCCTGGCCGCCATAGGTGTTGTtgttgaactcgaacggtgaagttaggtaggtggttgagaaggagaaattggacgcttccatgagcacggcgtagctgcagggggttcgatcatagatcctcgatgtattcatgctttcctcaaaccacatctggtagtaatcgaggccctttggtatggctgtctggcagcagcctttcccagagcagacagacacgcagccgctcatgtaccttcccacgtaatcctgatcggcgatgtacgccagtgtccggcacccgataactgtgaacttgTtggcagagtcagagaacctgtaacccgtgcccgtcaggttcagccaccacctgtagaagttcattttgtcggacgagatgttgtagcaggcataagatattttattcctcacacgggcctgaccaagctggacatcgatgctaaggagctcgacatttctaacaatgaatggcttggggacgccgttCccggtgtcgttgcagtggactacgaagccaggcgacatagcgcagccgcttgaactgaggccgaacgggtagacgatgtctacaccaccgcagttggtggtgttctggcatggcgacgatgttgccgcaccggccagggggtcggctgccagcgccgcgccgagcaatagcatcaatatccaaatattttgataaaatgcaacggaaatagcagccacagctgctcctcggtggggagacatggataagctaataatgaactgtgtgtttttggggggtatatcgagcacactacttttgcaacctcgatc
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| CDS seq | atgtctccccaccgaggagcagctgtggctgctatttccgttgcattttatcaaaatatttggatattgatgctattgctcggcgcggcgctggcagccgaccccctggccggtgcggcaacatcgtcgccatgccagaacaccaccaactgcggtggtgtagacatcgtctacccgttcggcctcagttcaagcggctgcgctatgtcgcctggcttcgtagtccactgcaacgacaccggGaacggcgtccccaagccattcattgttagaaatgtcgagctccttagcatcgatgtccagcttggtcaggcccgtgtgaggaataaaatatcttatgcctgctacaacatctcgtccgacaaaatgaacttctacaggtggtggctgaacctgacgggcacgggttacaggttctctgactctgccaAcaagttcacagttatcgggtgccggacactggcgtacatcgccgatcaggattacgtgggaaggtacatgagcggctgcgtgtctgtctgctctgggaaaggctgctgccagacagccataccaaagggcctcgattactaccagatgtggtttgaggaaagcatgaatacatcgaggatctatgatcgaaccccctgcagctacgccgtgctcatggaagcgtccaatttctccttctcaaccacctacctaacttcaccgttcgagttcaacaACAACACCTATGGCGGCCAGGCGCCAGTGGTGCTTGATTGGACTATCCAGACAGCCAACACTTGCAAGGAAGCCAGGGTAAATCTCGAGTCGTACGCTTGCAAAAGTGACAACGTTAAGTGTACCGACTCCTTCGATAGAACAGGCTACATCTGTAGCTGCCAAGATGGGTACCAAGGCAATCCTTACCTTCAAGGTCCCAACGGCTGTCAAGatattaatgaatgtcaacatggagagagttacccttgctatggagattgctacaataaacctggcagtttcgattgtctgtgtcatgctggtagtagtggaaatgcgacaattcaaggaggatgccgggaagacctcttatcaccgaaaacaaggctggcaattggtgttgttgccagtgtattggctgtcctctttggattcctaggatgggaagtgattcgacacaaacaaaaaattaaacgacaggctctattaagacagactgatgagttttttcaacaatatggaggccagatattgctagaaatgatgaaagcagatggaaatgatgggttcaccctctacaagagaggggagatagagattgccacaaataacttcagcaaggcacatgtcattggggaaggagggcagggaacagtttataaggctgttatagatggagttgccgtcgcaataaagaactgcaaggagattgacgagagcaggaagatggagtttgtgcaagagctggtcatactttgtcgtgttagccatcccaacattgtcaagttgcttggctgttga
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| Protein seq | MSPHRGAAVAAISVAFYQNIWILMLLLGAALAADPLAGAATSSPCQNTTNCGGVDIVYPFGLSSSGCAMSPGFVVHCNDTGNGVPKPFIVRNVELLSIDVQLGQARVRNKISYACYNISSDKMNFYRWWLNLTGTGYRFSDSANKFTVIGCRTLAYIADQDYVGRYMSGCVSVCSGKGCCQTAIPKGLDYYQMWFEESMNTSRIYDRTPCSYAVLMEASNFSFSTTYLTSPFEFNNNTYGGQAPVVLDWTIQTANTCKEARVNLESYACKSDNVKCTDSFDRTGYICSCQDGYQGNPYLQGPNGCQDINECQHGESYPCYGDCYNKPGSFDCLCHAGSSGNATIQGGCREDLLSPKTRLAIGVVASVLAVLFGFLGWEVIRHKQKIKRQALLRQTDEFFQQYGGQILLEMMKADGNDGFTLYKRGEIEIATNNFSKAHVIGEGGQGTVYKAVIDGVAVAIKNCKEIDESRKMEFVQELVILCRVSHPNIVKLLGC |
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| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0010170 | OsLima_04g0010170.01 | Chr04 | 19400945 | 19406051 | - | NAM | ||
| CDS seq | atgtctccccaccgaggagcagctgtggctgctatttccgttgcattttatcaaaatatttggatattgatgctattgctcggcgcggcgctggcagccgaccccctggccggtgcggcaacatcgtcgccatgccagaacaccaccaactgcggtggtgtagacatcgtctacccgttcggcctcagttcaagcggctgcgctatgtcgcctggcttcgtagtccactgcaacgacaccggGaacggcgtccccaagccattcattgttagaaatgtcgagctccttagcatcgatgtccagcttggtcaggcccgtgtgaggaataaaatatcttatgcctgctacaacatctcgtccgacaaaatgaacttctacaggtggtggctgaacctgacgggcacgggttacaggttctctgactctgccaAcaagttcacagttatcgggtgccggacactggcgtacatcgccgatcaggattacgtgggaaggtacatgagcggctgcgtgtctgtctgctctgggaaaggctgctgccagacagccataccaaagggcctcgattactaccagatgtggtttgaggaaagcatgaatacatcgaggatctatgatcgaaccccctgcagctacgccgtgctcatggaagcgtccaatttctccttctcaaccacctacctaacttcaccgttcgagttcaacaACAACACCTATGGCGGCCAGGCGCCAGTGGTGCTTGATTGGACTATCCAGACAGCCAACACTTGCAAGGAAGCCAGGGTAAATCTCGAGTCGTACGCTTGCAAAAGTGACAACGTTAAGTGTACCGACTCCTTCGATAGAACAGGCTACATCTGTAGCTGCCAAGATGGGTACCAAGGCAATCCTTACCTTCAAGGTCCCAACGGCTGTCAAGatattaatgaatgtcaacatggagagagttacccttgctatggagattgctacaataaacctggcagtttcgattgtctgtgtcatgctggtagtagtggaaatgcgacaattcaaggaggatgccgggaagacctcttatcaccgaaaacaaggctggcaattggtgttgttgccagtgtattggctgtcctctttggattcctaggatgggaagtgattcgacacaaacaaaaaattaaacgacaggctctattaagacagactgatgagttttttcaacaatatggaggccagatattgctagaaatgatgaaagcagatggaaatgatgggttcaccctctacaagagaggggagatagagattgccacaaataacttcagcaaggcacatgtcattggggaaggagggcagggaacagtttataaggctgttatagatggagttgccgtcgcaataaagaactgcaaggagattgacgagagcaggaagatggagtttgtgcaagagctggtcatactttgtcgtgttagccatcccaacattgtcaagttgcttggctgttga
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| Protein seq | MSPHRGAAVAAISVAFYQNIWILMLLLGAALAADPLAGAATSSPCQNTTNCGGVDIVYPFGLSSSGCAMSPGFVVHCNDTGNGVPKPFIVRNVELLSIDVQLGQARVRNKISYACYNISSDKMNFYRWWLNLTGTGYRFSDSANKFTVIGCRTLAYIADQDYVGRYMSGCVSVCSGKGCCQTAIPKGLDYYQMWFEESMNTSRIYDRTPCSYAVLMEASNFSFSTTYLTSPFEFNNNTYGGQAPVVLDWTIQTANTCKEARVNLESYACKSDNVKCTDSFDRTGYICSCQDGYQGNPYLQGPNGCQDINECQHGESYPCYGDCYNKPGSFDCLCHAGSSGNATIQGGCREDLLSPKTRLAIGVVASVLAVLFGFLGWEVIRHKQKIKRQALLRQTDEFFQQYGGQILLEMMKADGNDGFTLYKRGEIEIATNNFSKAHVIGEGGQGTVYKAVIDGVAVAIKNCKEIDESRKMEFVQELVILCRVSHPNIVKLLGC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0010170 | OsLima_04g0010170.02 | Chr04 | 19404058 | 19406120 | - | IsoSeq | ||
| CDS seq | atgccagaacaccaccaactgcggtggtgtagacatcgtctacccgttcggcctcagttcaagcggctgcgctatgtcgcctggcttcgtagtccactgcaacgacaccggGaacggcgtccccaagccattcat |
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| Protein seq | MPEHHQLRWCRHRLPVRPQFKRLRYVAWLRSPLQRHRERRPQAIH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.288782 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0370100 | RBH | 0.0 | 0.0 | 0.898808 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30160 | RBH | 0.0 | 0.0 | 0.231371 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0370100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010030 | RBH | 0.0 | 0.0 | 0.717448 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010790 | RBH | 0.0 | 0.0 | 1.049968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010570 | SBH | 1.495480 | 0.0 | 0.526729 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010370 | SBH | 3.210930 | 0.0 | 2.762189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0294400 | SBH | 0.056573 | 1.716228 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0282400 | SBH | 1.70305 | 1.5774315 | 0.0704735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010210 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010100 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010200 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010660 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009490 | RBH | 0.0 | 0.0 | 0.567824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009520 | RBH | 0.0 | 0.000000 | 0.740764 |
