Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0009500 | OGI:04053810 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:17873130-17877581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattgtctttaatttgtcgaagacggtccaccacatattctggtagtattgcctcgttatcacgcagagtcaaaaggtggatcaaaaattgcctccggaggtagtacgggtcctgcgaaagttagagtattttctttatagctttatgaggacatatttatggtggagtgcggtgtgtgcggatatgaaagcattatgtacctctgtaatagggttcagaagacgacgaccatcgtagttcaccataaagttgaatacgtaaaagccacagtcatccctgtatgtttttgagaaagtagtgtcagtacaagctttgggttggttgtatttcgtttgttttaggagtcactcacccgttctgctgctctggtatattttcaactgtctcaaagtcccaattaagtatgtccatgttccaccctggagatgcaagacgcatgcattccattacacactgtgacaccatgatctttatcttgtcatgcctggtgaaacgtgattccccgagtggatcttctgtgtttagtgaatcaagcaccgataacttcttgctctccatgttaaatacgtacagcacataatgattgaataggtgaacaggaatcagtatctgcaaagtttaggTttttcagtgggactacttctgtactattgtttacaagagtttctacaatctacgaactgcaaatttgtactcaccaggtggctttctgaaACatcatatactacctctgggcccgagaagtgtgcaagttgatggctagcttcccaaaattcctcaccagctagcgcgtacatctgacaatacagaaagaatcattgaatttatatttttattaatgaaagaaatatattgtttattgcatgcaatgttaccccaaaatcttggttaataaaatgcctccaaccaaggtagtttgtgttgtgaaatctctcaacttcttgttggaacattattcgaattgcaaggttgagagaatctgaatccatttggctcccaatctttatagtttcttggatgtttcgtagcgtcaatgatattctgaaaggatgggagctctgcagccatgtttttctgaaataaaccatggataaaaatgaatgtcagatttggtggggtgagatacttaattattctggaagaagaatgatacttactctaatgatgcatcgtcagaaatagACattatataggaatacaggtcgtcagcaatcctagattccagcctctccgttgagcattgctttgacatgaaaggtgacatgagcttcctgtttggtttgactacacgctttgacttgtgcttcagcaagtgagatggcgggttttcaacagtgtatttgcgcttcttctgcccgtcgctaccgaattcttcaattagcataatggaacattggttagtcatgcgagttcccgacgtaggcgatactgaagaatttggccttttttcgaatctgaaaacattcgcatgatcaggagtaaacacattgttggttggaatttttaatctttttggtacaccaacctggagctccattagattttggaggagtacactgcaagcctccaattttgtgatcatattgttgggtatctgatacatgaagagcgtaagaaaatttgttagagtgtcaagtagtacgagttttatttttaaaatggtgtatgtactcaacgttacctgttggttgatccaattgactagcatcttttgtagcatgtgtggagtagtttgtgggtgtgtggtatcccatggcagttgtgtctccccatggatggagaggcccttgtatatcctcaatggtatcaataactttcgttactgctgcccttatcgctatcttaactaccgctgtaatattagtcttgaaagctctcttgaataggttagatgcgtgaatagcagtttgcatggtgcttatgtcgacgaaatctgatatggtaggcaaaatctcatcgatgcggtcgaatccatcctgaacgtaagatttcaactcctcgtatgcctgttttatgttatcatatataccacatgttagtttaaaatcccttgatcatgtgaaaattacaacttaatgaagaaacaatcaagtaacatagcatacggatggttgacatacctgtgacccgacagttccacgtacgtctaacgaagagaagtgtgattccaggaattttattaaatttttaccgccatcaatggctctagatgggatcttcgaaccggagcataagtttaggggagatagctctggcacatgggggttgttttctcttggttccttcatcaactgaacagcatgtatatcggaaatagctaaattttgcagccagaaataggcatattacagccagggtatcgtacatacctggagtttcccataacgagggaaggggaatcctgggttatgtttactaactacatcttgttgaatcatcctagcaatttgatcatcctcaaactgagaaatgtgacatgttttaacacatgtgatcccaaccatccggaactggagatttctcaaatattttacctgcaaaaatgattcacaatgacaatatgtgtgttgattgtatgctgcattaacaagtcagttttaaatgctaaccattagaaagatgatatacccgttaatggatagttgagccttattcggaaagcaggtgggcattgattctgctgctttcttcacctcatctacaacgaattgggaccagttgtactgttttatattgtcaacatcagaaacagccataatatacctaggagatatgaagtttgcgcaggattgcggtgccaaaagcttcgttgtgacataaagcacaaaagccatgaaaaccctcttttcatctattgtcatgggataaccatactgcttctttaggattctctctaagagtgatattttcaggtgtgaaaagtttggtatctcaaatatttcgcacaatattgtttcttcccatccaattcatcttgagagcaagggataataggttgacctgagcatggcaagccaaaaactgcattcacatcattaggaccgaatggcaactcctggttgacatctttaacaatagcgcatgatttcggatcaactttcctcagtagccatgcaccaaactgcctgtttaccttagtaagcttgatatccaaaagtccatcaaacccaacttcaccaatcaactccttcttcctatcatcgaattctttaatgatattcactacgcatttgggctgacacctgcagttgataccaaaggtagttgtctttcttctgtctatttaaaactctgctttgccgatacctggataccacccgtgcagcagtcttatttaggctgccccttgtgccagaaaccttcaaagcctgcagataattagtttttcatttcataaatagacaatactacatggaccagtgtatttaaaaattcaacatatacttctgttttttaaaaaaaaacagcatacactcatatatgtatggaaagatgaagtacaaaatactgcgtagcaaattctacctatgtgtaccctcttaattaaaaaaaaatcatgtgcactgaaagaaaagtcagtatatgcaaagtttagagaatattactgtatgtaaaaaatcagcatatacctctctatgtaaagtgcagtatatacttcttcgtaacaaggtccagtatgtaaaccactatggaaaagcctctgtatatatgtggaaaaatgcagtatatgctatcgtctagaaaaattcagtatatctgtgaaaaattcagtaaatactggtgcgtatcaaagttcagtctatgaatcacagtggaaagattcagtatagatgtggaaaatgcagtatatgctatcgtccaacaaagtagagaataaagctccccacataaaaattcagtatatactattgcctaacagagagttcagtaagaaccctgccacaccaaaaatcaatacttaataccgtctagcagattccaaaagtttccctccaaagaaaaaatggtatataccgttgaaaattcagtacgtactaccatctacattttctttatgggggtggggctaaaacagcattaacttcatccacccaaaaaaccatcatatgcactaaaaggggaaaaattagcatctgaaactgagagagtacatgaaccgaactacacctaatccctctctacaggcatacatgtattcaatttcaggtggcataccttggactgtggtgacaaactaattttcctgtgaccctgcggcaaagaagaaaattttaggcaacgtgtcttgatcttgccgtacaaaaataaacgaatactaacctgctgctttggatgaaatccactgctatggcccatcgattttgccattgttgccccgctcctgcattcagccgactctagatcgattacttctgcttcaggaacacatgctgttgagagaggatccat
More
|
||||||||||
| CDS seq | atggatcctctctcaacagcatgtgttcctgaagcagaagtaatcgatctagagtcggctgaatgcaggagcggggcaacaatggcaaaatcgatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgtcaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgaggaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcttttgtgctttatgtcacaacgaagcttttggcaccgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctgatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagcagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtatatcatctttctaatggtaaaatatttgagaaatctccagttccggatggttgggatcacatgtgttaaaacatgtcacatttctcagtttgaggatgatcaaattgctaggatgattcaacaagatgtagttagtaaacataacccaggattccccttccctcgttatgggaaactccagttgatgaaggaaccaagagaaaacaacccccatgtgccagagctatctcccctaaacttatgctccggttcgaagatcccatctagagccattgatggcggtaaaaatttaataaaattcctggaatcacacttctcttcgttagacgtacgtggaactgtcgggtcacaggcatacgaggagttgaaatcttacgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggtagttaagatagcgataagggcagcagtaacgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccgccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatctaggattgctgacgacctgtattcctatataatGTctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcattttattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcccagaggtagtatatgatGTttcagaaagccacctgatactgattcctgttcacctattcaatcattatgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactcggggaatcacgtttcaccaggcatgacaagataaagatcatggtgtcacagtgtgtaatggaatgcatgcgtcttgcatctccagggtggaacatggacatacttaattgggactttgagacagttgaaaatataccagagcagcagaacggggatgactgtggcttttacgtattcaactttatggtgaactacgatggtcgtcgtcttctgaaccctattacagaggacccgtactacctccggaggcaatttttgatccaccttttgactctgcgtgataacgaggcaatactaccagaatatgtggtggaccgtcttcgacaaattaaagacaattag
More
|
||||||||||
| Protein seq | MDPLSTACVPEAEVIDLESAECRSGATMAKSMGHSSGFHPKQQGHRKISLSPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLRKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSERILKKQYGYPMTIDEKRVFMAFVLYVTTKLLAPQSCANFISPRYIMAVSDVDNIKQYNWSQFVVDEVKKAAESMPTCFPNKAQLSINGYIIFLMVKYLRNLQFRMVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSPLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAVVKIAIRAAVTKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGPEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0009500 | OsLima_04g0009500.01 | Chr04 | 17873130 | 17877581 | - | NAM | ||
| CDS seq | atggatcctctctcaacagcatgtgttcctgaagcagaagtaatcgatctagagtcggctgaatgcaggagcggggcaacaatggcaaaatcgatgggccatagcagtggatttcatccaaagcagcagggtcacaggaaaattagtttgtcaccacagtccaaggctttgaaggtttctggcacaaggggcagcctaaataagactgctgcacgggtggtatccaggtgtcagcccaaatgcgtagtgaatatcattaaagaattcgatgataggaagaaggagttgattggtgaagttgggtttgatggacttttggatatcaagcttactaaggtaaacaggcagtttggtgcatggctactgaggaaagttgatccgaaatcatgcgctattgttaaagatgtcaaccaggagttgccattcggtcctaatgatgtgaatgcagtttttggcttgccatgctcagagagaatcctaaagaagcagtatggttatcccatgacaatagatgaaaagagggttttcatggcttttgtgctttatgtcacaacgaagcttttggcaccgcaatcctgcgcaaacttcatatctcctaggtatattatggctgtttctgatgttgacaatataaaacagtacaactggtcccaattcgttgtagatgaggtgaagaaagcagcagaatcaatgcccacctgctttccgaataaggctcaactatccattaacgggtatatcatctttctaatggtaaaatatttgagaaatctccagttccggatggttgggatcacatgtgttaaaacatgtcacatttctcagtttgaggatgatcaaattgctaggatgattcaacaagatgtagttagtaaacataacccaggattccccttccctcgttatgggaaactccagttgatgaaggaaccaagagaaaacaacccccatgtgccagagctatctcccctaaacttatgctccggttcgaagatcccatctagagccattgatggcggtaaaaatttaataaaattcctggaatcacacttctcttcgttagacgtacgtggaactgtcgggtcacaggcatacgaggagttgaaatcttacgttcaggatggattcgaccgcatcgatgagattttgcctaccatatcagatttcgtcgacataagcaccatgcaaactgctattcacgcatctaacctattcaagagagctttcaagactaatattacagcggtagttaagatagcgataagggcagcagtaacgaaagttattgataccattgaggatatacaagggcctctccatccatggggagacacaactgccatgggataccacacacccacaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacaaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccgccatctcacttgctgaagcacaagtcaaagcgtgtagtcaaaccaaacaggaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatctaggattgctgacgacctgtattcctatataatGTctatttctgacgatgcatcattagaaaaaacatggctgcagagctcccatcctttcagaatatcattgacgctacgaaacatccaagaaactataaagattgggagccaaatggattcagattctctcaaccttgcaattcgaataatgttccaacaagaagttgagagatttcacaacacaaactaccttggttggaggcattttattaaccaagattttgggatgtacgcgctagctggtgaggaattttgggaagctagccatcaacttgcacacttctcgggcccagaggtagtatatgatGTttcagaaagccacctgatactgattcctgttcacctattcaatcattatgtgctgtacgtatttaacatggagagcaagaagttatcggtgcttgattcactaaacacagaagatccactcggggaatcacgtttcaccaggcatgacaagataaagatcatggtgtcacagtgtgtaatggaatgcatgcgtcttgcatctccagggtggaacatggacatacttaattgggactttgagacagttgaaaatataccagagcagcagaacggggatgactgtggcttttacgtattcaactttatggtgaactacgatggtcgtcgtcttctgaaccctattacagaggacccgtactacctccggaggcaatttttgatccaccttttgactctgcgtgataacgaggcaatactaccagaatatgtggtggaccgtcttcgacaaattaaagacaattag
More
|
|||||||
| Protein seq | MDPLSTACVPEAEVIDLESAECRSGATMAKSMGHSSGFHPKQQGHRKISLSPQSKALKVSGTRGSLNKTAARVVSRCQPKCVVNIIKEFDDRKKELIGEVGFDGLLDIKLTKVNRQFGAWLLRKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSERILKKQYGYPMTIDEKRVFMAFVLYVTTKLLAPQSCANFISPRYIMAVSDVDNIKQYNWSQFVVDEVKKAAESMPTCFPNKAQLSINGYIIFLMVKYLRNLQFRMVGITCVKTCHISQFEDDQIARMIQQDVVSKHNPGFPFPRYGKLQLMKEPRENNPHVPELSPLNLCSGSKIPSRAIDGGKNLIKFLESHFSSLDVRGTVGSQAYEELKSYVQDGFDRIDEILPTISDFVDISTMQTAIHASNLFKRAFKTNITAVVKIAIRAAVTKVIDTIEDIQGPLHPWGDTTAMGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRNIQETIKIGSQMDSDSLNLAIRIMFQQEVERFHNTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHFSGPEVVYDVSESHLILIPVHLFNHYVLYVFNMESKKLSVLDSLNTEDPLGESRFTRHDKIKIMVSQCVMECMRLASPGWNMDILNWDFETVENIPEQQNGDDCGFYVFNFMVNYDGRRLLNPITEDPYYLRRQFLIHLLTLRDNEAILPEYVVDRLRQIKDN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0307600 | SBH | 1.108489 | 0.972281 | 4.343823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28590 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0307600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009430 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009980 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009780 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0268200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0264800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009640 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009760 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028560 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025400 | SBH | 0.0 | 0.0 | 0.0 |
