Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0025400 | OGI:08052770 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:26813778-26814527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggataccacacacccAcaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacaggtaacgttgagtacatacaccattttaaaaataaaactcgtactacttgacactctaacaaattttcttacgctcttcatgtatcagatacccaacaatatgatcacAaaattggaggcttgcagtgtactcctccaaaatctaatggagctccaggttggtgtaccaaaagattaaaaattccaaccaacaatgtgtttactcctgatcatgcgaatgttttcagattcgaaaaaaaggccaaattcttcagtatcgcctacgtcgggaactcgcatgactaaccaatgttccattatgctaattgaagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctaaagcacaagtcaaagcgtgtagtcaaaccaaacaGgaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgacctgtattcctatataatgtctatttctgacgatgcatcattagagtaagtatcattcttcttccagaatAattaagtatctcaccccaccAaatctgacattcatttttatccatggtttatttcagaaaaacatggctgcaaagctcccatcctttcagaatatcattgacgctacgaacatccaagaaactataa
More
|
||||||||||
| CDS seq | atgggataccacacacccAcaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacAaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctaaagcacaagtcaaagcgtgtagtcaaaccaaacaGgaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgacctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcaaagctcccatcctttcagaatatcattgacgctacgaacatccaagaaactataa
More
|
||||||||||
| Protein seq | MGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRTSKKL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0025400 | OsNaBo_02g0025400.01 | Chr02 | 26813778 | 26814527 | + | NAM | ||
| CDS seq | atgggataccacacacccAcaaactactccacacatgctacaaaagatgctagtcaattggatcaaccaacagatacccaacaatatgatcacAaaattggaggcttgcagtgtactcctccaaaatctaatggagctccagaattcggtagcgacgggcagaagaagcgcaaatacactgttgaaaacccaccatctcacttgctaaagcacaagtcaaagcgtgtagtcaaaccaaacaGgaagctcatgtcacctttcatgtcaaagcaatgctcaacggagaggctggaatccaggattgctgacgacctgtattcctatataatgtctatttctgacgatgcatcattagaaaaaacatggctgcaaagctcccatcctttcagaatatcattgacgctacgaacatccaagaaactataa
More
|
|||||||
| Protein seq | MGYHTPTNYSTHATKDASQLDQPTDTQQYDHKIGGLQCTPPKSNGAPEFGSDGQKKRKYTVENPPSHLLKHKSKRVVKPNRKLMSPFMSKQCSTERLESRIADDLYSYIMSISDDASLEKTWLQSSHPFRISLTLRTSKKL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40940 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018930 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018930 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025240 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0312300 | SBH | 0.7616705 | 0.4634385 | 0.0556815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0264800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013370 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019170 | SBH | 0.691711 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013210 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019100 | SBH | 0.493623 | 0.0 | 0.568950 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011180 | RBH | 0.0 | 0.0 | 0.0 |
