Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0007850 | OGI:04048990 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:15387747-15388503 | ||||||||
| Gene Symbol | S28, S28(t), rpl27-3, rpl27, mtRPL27a | ||||||||||
| DNA seq | atggctttttcatcagttttcaggagaggaaatgtcaaagaattgatctcaaatgtttcggtctacactagcacagtaggtaatggctttggctttaggcagtctgagactcttgactgacttgagtctgtatttgcgctattctttgaatgacaaaatatacctcattgcagagtcatctggaggattgagcttgatttttaagcgttgggccaccaaaaagacagctggatcaacaaaaaatggccgtgactctaaccctaagtatttgggtgttaaaaagtttggcggagaggtacaatcttgtgatctgtcatatgactttcatgttttttattgtttatgacagtacaaagtactttctttaatcacgtaaaagtaatcagacttcggagatttgtgtgtcccttctgatcccgtacctgaactcctgaagcaacttgtcatttttgttattagaacaaaaaggtgaaaaagatctaaactgttcctgaacatcaacatttgcatcattttttagaaagtggagccaggaaacatcatcgtccgccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctcttctgtctgaaagaaggacatgtgcgattcgagcgcaacaagctgactggcaggaaatgggttcatgttgatcctgttgctgggcatgtgctccaccctgtctacaccagtgattcgacccctgcagctgaaatggagccattgtaa
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| CDS seq | atggctttttcatcagttttcaggagaggaaatgtcaaagaattgatctcaaatgtttcggtctacactagcacagtagagtcatctggaggattgagcttgatttttaagcgttgggccaccaaaaagacagctggatcaacaaaaaatggccgtgactctaaccctaagtatttgggtgttaaaaagtttggcggagagaaagtggagccaggaaacatcatcgtccgccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctcttctgtctgaaagaaggacatgtgcgattcgagcgcaacaagctgactggcaggaaatgggttcatgttgatcctgttgctgggcatgtgctccaccctgtctacaccagtgattcgacccctgcagctgaaatggagccattgtaa
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| Protein seq | MAFSSVFRRGNVKELISNVSVYTSTVESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYTSDSTPAAEMEPL |
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| Function | 50S ribosomal protein L27 [UniProtKB/Swiss-Prot:B0VEJ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0007850 | OsLima_04g0007850.01 | Chr04 | 15387747 | 15388503 | + | NAM | ||
| CDS seq | atggctttttcatcagttttcaggagaggaaatgtcaaagaattgatctcaaatgtttcggtctacactagcacagtagagtcatctggaggattgagcttgatttttaagcgttgggccaccaaaaagacagctggatcaacaaaaaatggccgtgactctaaccctaagtatttgggtgttaaaaagtttggcggagagaaagtggagccaggaaacatcatcgtccgccaaagaggaacccgcttccatcctgggaactacgttggcatggggaaggaccatactctcttctgtctgaaagaaggacatgtgcgattcgagcgcaacaagctgactggcaggaaatgggttcatgttgatcctgttgctgggcatgtgctccaccctgtctacaccagtgattcgacccctgcagctgaaatggagccattgtaa
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| Protein seq | MAFSSVFRRGNVKELISNVSVYTSTVESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYTSDSTPAAEMEPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0321500 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25540 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0321500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008020 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008660 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008530 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008290 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0305600 | SBH | 4.827434 | 14.2017075 | 10.6131765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007910 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0327800 | SBH | 7.8966425 | 20.0572235 | 18.137907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014810 | RBH | 1.191718 | 0.689922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008060 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008040 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007990 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008070 | RBH | 0.0 | 0.0 | 0.0 |
