Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0005460 | OGI:04033110 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:10833858-10836872 | ||||||||
| Gene Symbol | DGS1, OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1 | ||||||||||
| DNA seq | atgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcaggtattaagatattatgtgtgtccaatgttttatctttagctgaaccatccacttggtagtcaagtgtatattgactttactgtatatatcatcaaactggatagtattgcaagcgttgcttgtcttttgtaaggacacataatctttattacttattcagctgtatggattactttgtttggatattgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgttaaaccctcgtccaggaatcaaccgaggcacacaatgacaatattgataatagagtacaaatatttaactattaaatactcgcaaattAaaattattacagaggtagatagttcctctcaaagaaaataacattctacgcagcggaaaattaaactaaaacaaactacggaacagcgacggcaactccactccacaggcaacttaaccagaacaagctcaatcctcaagatcatcaccttcactgaagtactcctcctctgatgaatgaatattgcaagaatgagcatatgacatactcaacaagccacacagcaaatatgcaagtgcacaggataacaaaggatggcataatatagttcatttgcagaaacagcatttaataaatattgaagagaacagtaaacagttgaataattaatcaatattaaacaaacaccatacaacacaccgtgttgcataggcccaaccacatttgaacaaccaacccggctgaacaaatgaaccctccaaaccaggaattaaccattccaaaccaggaactatattatcacattattaccattaatgagtagtgtgagactaatcacgaaaaacattgctcaactcacccataaccgcgggtacggctattcgaatagtttaaactctaatcagaggtgtaccactgtacccacaagacacaaccccacatcatgtcaccatgtgcctcaataccaccacggatctcggaaggaattgtgacaatatccctagcataacacaactcaccacagtgcacctttcctggatcataatcacccccTtttaaaacaaggcatggactccccagcgacccccatggacttctcgccacttctcagtctgatgcactataatgaattatgctatacaaaagataaagccgttgcccacgctggcttgtggttggcacgataaatgtatcacaacagtagctcgcgaaccggtccttaattgtcatgagcacaaccatcaaaaccatatgctcacaacccaccttagtcaggttttagtcatcaattaattatcatcacacgatcaaccatcgtgagctaccattaaataaccacaattaataacatAAaaaaaatgatgaagtctagtttataattaaccccttttagttaactaatgtttctaggcatggctaagcaaacctaaagtacaccgacccttgaactatatctgctgcacaattgcaagtggtttcctagttggtcaagtacaaGTgtgtggttcggttgtatcagaggatgaaaatttgttgcaagcaaaacactggtctgttagaagagtatgatttttttcatcctattctaagcagtataattgaatgcttaatgcattggaatgccctgagaaatgttatgcgcaaaggatgcatcaaaatagcatttcactgattcattccatgcctaatcattattttgtgtagtAaaaggtcccattaatgtacagagtatttctgatgatgttggccttctctcttgatttacatgcttacttgcaactgatgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcaggtattaagatattatgtgtgtccaatgttttatctttagctgaaccatccacttggtagtcaagTGTAtattgactttactgtatatatcatcaaactggatagtattgcaagcgttgcttgtcttttgtaaggacacataatctttattacttattcagctgtatggattactttgtttggatattgacaagctttgtttacatgcattcagatggatcagcttcaaaattaccaaagatgtttgaaccatgggtgagtaaataaagatatcaagttcacttatgtgggattccttctttccactccttatttacttgattcctcacaggactatacccacggtgactatcctgttactctcccactgaggagaccgtattctggagatcctggtatcttgttggtccttccagactaggtagaatcattttcttcaaccaaaccttatgtctcttctgttcataatccagaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatggtgtgtcctggtgtttaagttcaatgtttcatttctggtaactggagtgtagcttaaaagaaaatagaattgtactctgtgtagcatatgcatcctagccttttaacttttagacctgttaaagtggcgaaggcaagtccgttttgctgattgatgtattgacatttgacagcatcggtcagacaaagcatagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagatAaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtgagtatgaaaactctatcagtgggaccaaaggaaaggatctga
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| CDS seq | atgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaagatgtttgaaccatgggactatacccacggtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagatAaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtgagtatgaaaactctatcagtgggaccaaaggaaaggatctga
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| Protein seq | MSCFVVIVEMRTQVAFGQGNSSYARSFPMQSSAEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKMFEPWDYTHGDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSMKTLSVGPKERI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0005460 | OsLima_04g0005460.01 | Chr04 | 10833858 | 10836872 | + | NAM | ||
| CDS seq | atgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaagatgtttgaaccatgggactatacccacggtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagatAaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtgagtatgaaaactctatcagtgggaccaaaggaaaggatctga
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| Protein seq | MSCFVVIVEMRTQVAFGQGNSSYARSFPMQSSAEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKMFEPWDYTHGDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSMKTLSVGPKERI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32350 | SBH | 2.381084 | 2.348512 | 1.920179 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011640 | SBH | 0.000000 | 0.000000 | 5.646593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012430 | SBH | 0.000000 | 4.125924 | 3.994825 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012120 | SBH | 1.241509 | 11.390977 | 7.177646 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011780 | SBH | 0.000000 | 0.278643 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005690 | SBH | 1.266976 | 4.770281 | 5.311286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0155600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005670 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0166700 | SBH | 0 | 0.0037315 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005520 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005710 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005520 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005370 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_UnG000330 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005770 | SBH | 0.0 | 0.0 | 0.0 |
