Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0012120 | OGI:04033110 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:19077449-19084246 | ||||||||
| Gene Symbol | DGS1, OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1 | ||||||||||
| DNA seq | gacaaaatttgactgctatagatgagaagaggacacaaaatcgctcagcagttcactttgacattttgtgacttgctggctaactgattctccaccgtttgatatattcccacgaaaactcaaaattgccattttgataaaactggcgtttttttggtctaaagaagcccaagggcaagtaaaggaaactcatggatgaggagcaaacaaaattcccatgaaatggttcatatggccatgacttttgcacataaggcatgggcttacgcttccatcttgtcgaaagaatccagcagatgctcgatgtccggggttacaatcgcgcgcttgctgatctctcccaaggtgcagcagtgcttttctctggcgttaattgccgcaacctcctggacaaacatgcaatttgaacccggagagacctgcacggttgtttcagttttgatatagcatggggccatggaaaacataaagatagaatgctggggcatagagttttcatactcacatcaaagagtgaatctccgatcttcatcttcactttaccgctcctatatacaagtatcttccccatgaaaccttctggaaggtctttgagcttagagccaaggacttttggtggccttgttcctgcatgcatctccttagagcttgtgcttgtaggttcagcatccaccccatcgcctttatctgtctctgcgactgagtctggctgctttggtaatggaagagatgcaggcatctggaagaaaagcaactgtgctttgtctgaccgatgctgtcaaatgtcaatacatcaatcagcaaaacggacttgccttcgccactttaacaggtctaaaagttaaaaggctaggatgcatatgctacacagagtacaattctatttgcttttaagctacactccagttaccagaaatgaaacattgaacttaaacaccaggacacaccattagtccaagttcttctgctgtggttaattcaccatcttgggctccggtggcagaagactctccaaactcctcttcattaagaatttctggattatgaacagaagagacataaggtttggttgaagaaaatgattctacctagtctggaaggaccaacaagataccaggatctccagaatacggtctcctcagtgggagagtaacaggatagtcactgtgggtatagtcctgtgaggaatcaagtaaataaggagtggaaagaaggaatcccacataagtgaacttgatatctttatttactcacccatggttcaacatattcttttggtaattttgaagctgatccatctgaatatgcatgtaaacaaagcttgtcaatatccaaacaaagtaatccatacagctgaataagtaataaagattatgtgtccttacaaaagacaagcaacgcttgcaatactatccagtttgatgatatatacagtaaagtcaatatacacttgactaccaagtggatggttcagctaaagataaaacattggacacacataatatcttaatacctgctgaactttgcatgggaaatgatcttgcatacgacgagttcccctgtccaaatgcaacttgagtacgcatttctacgatgacaacaaagcacgacatcagtagcaagtaagcatgtaaatcaagagagaaggccaacatcatcagaaatactctgtacattaatgggaccttttactacacaaaataatgattaggcatggaatgaatcagtgaaatgctattttgatgcatcctttgcgcataacatttctcagggcattccaatgcattaagcattcaattatactgcttagaataggatgaaaatcaaatcatactcttctaacagaccagtgttttgcttgcaacaaattttcatcctctgatacaaccgaaccacacacttgtacttgaccaactaagaaaccacttgcaattgtgcagcagatatagttcaagggtcggtgtacaagttcttttcttttctttttgaaaaaaaaaaggatatgcattgcctagtagattaagattggtcatacaagtaaaaacactcatgtggccagctgaatcaggaaaaatccattgagcaatgaaaaatcagtcatgcatgctcaattcacagccttcactattcttaactacatagattgcagttgcaggttgaaaatttaaaacctctgaggacatgcatatttggcaagacaagttaactgataaaccgataacaacagggggaaatagacactggtcatgctcgaataatacaagattacacatttaccagatgatcatgaataaattggaaaggacggaaaggaacagcaattaactagtcttaccctttttctcagtcttaaattttctcacaaagggatctgtgctctgcaaatcggcaaagtaattcaagatttcacaaacaccaaacaagacttaattaacaagaaactttttatgtacagtattaaatgacaaaaaagatgagaaataaacacctgcgatgtcttaagcttcatcaacagctctttatctacggtttcatccttgctttcctcagccggctccctgttgaattacacaaactctctctctcattcgacagcacataacctattgtaatagataatctcccatgaaacatatcagagcattatggaagaaaatatggagcgaatcacatacgttttcgggacgatctttggagctttcttaggacaaaccttgggtgcaaatttaagccctcccttgcgtagcacaaaaggaaaaaaatatattaaagattacggtaagaaccaattaggccacaccaatcaggaaatataagggaggatttttaacaaccttgcgaggagggaggccatccgtttccttcttcactttgcccttgctatccatcatacaagaaaagaagcacaaatcctgcggaaaaaaaaactcgcttagctttacattacattacacgatatgatgatctctattgattattgaatgaacttcccctgcagatcgtacagttcatcgcagaaacgagataattggaggcccaatcggagggtctaatcggagagggctatgaaaccaatgcaggtcccaatggatccccaaattcgtgcccaatggatccccaaatccgtgccacgcccaatagacgatagcgggcctaggattttaaggttgggtattcgaaataggaagaggtaaaacaaaattcaacccaaagcctaacatttgatatctataatttcatatagttctaactaatagttatataatgtataactgatataagtagaattggccataaatttaatgtgtttaacatatggaagtactaaactactgattgacaatcgttcaacatatcaaatatgataaaaaaaaatcttacaacatggtatttaagtgcctttttttttctaaaaatagcgggatcatttttcctcttcatgtttcagattaaaaaaaataatcaacgatatggtatttcagtgctacttatcgagttattattgtgatactttgtgaaaaatatatgcactacaatctagagattaagtatatatccacgaatccatcaacatcacgccattacattacaccatggttaatgcacaaaattaggcagccattcactacaataaacaaagtacagctctctcgagttaaaatttggtgtatacttgtccagtctacaaaaattagacaacaaattgggttcaaattttctcttatattggaccacttaagcagttcaacaggcaacgatctaacaaatgtgcgattcaatcttcacattcaacaaattggaaagcgaggattgaatggcttacctctggcaatcgactgaattgaatcagaactattcggcgaggtagcttgccaagggcggtgagggcgcgccgcgcgcggtgagcgggcgctgcagtgcgaccaacaggggcaccgggccaaccagccaagggcagggggtcacggagcgcgccgggggagaaggaagacaacgacgagaaaaagtagagcctgatcgccacaaataaacactagtactggcataaaccctagctagagagaaacctcactggctgctaggcccggcccggcccactcgtttgcctcttgcaatcaaggcgattagaatggacacggatgggtgatcgtatttacggctaattatttctttcggttatagacgacgcgtccgtcgacggtaaggcgcacatgataacttcgccgatctcaaaatatgtcgactcggtttttcggagatgctcataaggtaacgtgcatgtgtgcctttgataggcgacgcgcccatcgacgataaggcgcatatgataacttcgttgatctcaaaatatgtcgacttggtttcttggagatgctcataagggtaacgtgcatgtgagcgcttttatttttaccgtgtttcctttttaaaaataaaagaattgaattgcatatatgcataacacatatatttgtactatcttcttaagttctttgtgtcgtgttgttggtatcattggattttgttatggaagccccggattaaccactacactaaaatgctacggagaaattcgccacaaaaatcaaattgcaatattacatgggactatctatgtaacattcgatagaaaatttcctagaaaatctttcaaatgtatctactccctctgttttttatagctgtagtcattgacttttttaatatatgcttgactatttatcttattcaaagtgacttttatgactttccttaattattggggttttctttgtgtgttatttaccattatgcactggtagagtgtcacgccccgatttcgttcggaatgaaaaatcatttaataatgcatttctagaatttatgttaaaagttaaagcaattaatcaagtggattaataagtgaattaaaaatttcatttaaagatcttggtcggaaaatatttttgtaatattctttgtgccctaaagtcctctctacaatttcccgtgaattttcggagctcaagaaagtaattttaatagcacaaagttcatttaattaattaaataaaaagaaaatcaattaaaattctcattccttgtccttgggccgcttttggcccaagtctctttcccccctcacggcccgcgcacctccttcccctcctctctccatctagggcggcctccttgcctctctccctcggcccgccccttgcaaaagtctatctggcatccctctcccggccccctctctctccctcatgtccttcccctacctctagcccgctggcaaccacctccccccttcccacgtcccgccgaatccggcgccctcccgcacacgtgcccgcacccaaagatcgtggcccggtcccctcctcgtcctccaccacttcccccactcctccccgcaaaaatcggcgccgagccgccgccactccgcccacgttgtttccccactccaccaccggttgccgcccctctcgaccacgattctggtctcccgagcctataaaaacgcttcccgcacctccctctctcatttttccaagttgcccgagctcccgcgtcctctcccgtgctccccacgccgctcccgacctccaccgctcaccggtgagctccggctgccgtgccgcgccatcaccaccaccatcggctccgccgctccgcaccgcacaccggccgccgctctacccttccgatccacccctaagccaccacatccaccacgaagccgagccacgcgcctcttccaccgcctccagccgctccccgccaccgagagaggtctcgcctggccatgctaccgccacccacagcatcgccgcgccctgccgcacctcggtaaaaagaaaaggactatgtgatgctagcatgactccgaggcatttaaatagcgcccatcaggtacagttgaacagctcattctcccgaccgaagaaactaactaaaagtttcaggcccccatattccacaaagacgggtagtgcgccaacgatcagaccccccatacccaaaacacgtttcatcaaaacagctaaacagcgttccgatgcgcctctcactacggaccttttacatcccctctacaccgctaaactagttagccccaaggcgaccacactgacagaacgggaatggaaaaccctctctaactcaggcattcccgcaatcatcgatgacagtaaataagctctagaaccacacggggggcagagagggccctaacgggtgtggcacccggtgaaccctaagctcatcagaggcggacctccctctcatgggggcggcgggcatggcaagccatggcggatctaacatgggggcgtagggggttcagtcgaacccaaatttctctagaacgcaagctagggttaacacgaattcgagcccaaaaaagaagaacaaaaaaaaaaaaaagaggacgtgcgatgctcaccgggacgcggcggaggcaaccctgctcggtcgcgggatggatgggggatcggcggcggcgggcggcggcggcggcggcggcgggcgaactcgcgaggagtcggagtcggagtcgagggcgagcggagggggggaaatatcgcggctcgacgcaaccgcccgcagcacccccgcacgatgatttccgatgatttgcacaattgcgcttacgcaggaacacttgggggagaggagaaatgggctgccgccgccgtagcctccgggagcaacttccgccgttgcagcctccggtcgcagctgccgccgccaccgccgccgcctcctccaagcgaggccgcagctgccgcagcaagtcagagccgccgccgtcgc
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| CDS seq | atggcctccctcctcgcaagggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaagacatcgcagagcacagatccctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
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| Protein seq | MASLLAREPAEESKDETVDKELLMKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA |
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| Function | DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot:Q5E9Z7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0012120 | OsCMeo_04g0012120.01 | Chr04 | 19077464 | 19083976 | - | NAM | ||
| CDS seq | atggcctccctcctcgcaagggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaagacatcgcagagcacagatccctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
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| Protein seq | MASLLAREPAEESKDETVDKELLMKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0012120 | OsCMeo_04g0012120.02 | Chr04 | 19077449 | 19084246 | - | IsoSeq | ||
| CDS seq | gcgacggcggcggctctgacttgctgcggcagctgcggcctcgcttggaggaggcggcggcggtggcggcggcagctgcgaccggaggctgcaacggcggaagttgctcccggaggctacggcggcggcagcccatttctcctctcccccaagtgttcctgcgtaagcgcaattgtgcaaatcatcggaaatcatcgtgcgggggtgctgcgggcggttgcgtcgagccgcgatatttccccccctccgctcgccctcgactccgactccgactcctcgcgagttcgcccgccgccgccgccgccgccgcccgccgccgccgatcccccatccatcccgcgaccgagcagggttgcctccgccgcgtcccggatttgtgcttcttttctt
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| Protein seq | ATAAALTCCGSCGLAWRRRRRWRRQLRPEAATAEVAPGGYGGGSPFLLSPKCSCVSAIVQIIGNHRAGVLRAVASSRDISPPPLALDSDSDSSRVRPPPPPPPPAAADPPSIPRPSRVASAASRICASFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 19080006 | 19080283 | - | OsCMeo_04g0012120.02 | OsCMeo_04g0012120.01,OsCMeo_04g0012120.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.241509 | 11.390977 | 7.177646 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0394500 | SBH | 2.753114 | 3.539967 | 6.915311 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32350 | RBH | 2.381084 | 2.348512 | 1.920179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011630 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012430 | SBH | 0.000000 | 4.125924 | 3.994825 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018860 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011780 | RBH | 0.000000 | 0.278643 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0308200 | SBH | 0.9733645 | 1.1628775 | 1.340435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010960 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0305300 | SBH | 0.017882 | 0.204095 | 0.2720985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011610 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011220 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011240 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011730 | SBH | 0.222654 | 0.260482 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011960 | RBH | 0.076790 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011150 | RBH | 0.000000 | 3.441894 | 0.969036 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011130 | RBH | 0.698634 | 5.830462 | 2.016376 |
