Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0004640 | OGI:04014620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:8099752-8100483 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagacaactgtagcaggtaggttcttcttgctcgtggtgttaccaagcggtgatttgccaatgaacctctgaagtggagcaatacgaggcgcattgctaggactggcgatagttgggcgacctattgctgacaacacttgctgcgggtgctgacAaaggagtgaactacccctttgtcgctgtaacggattgttgtttccctgggattgcttaccctgctggtgctggtgttgtaggcttgaaacgattgcgggtggaatagtgtggcctttgacgatgcccttgacgataatctattgaggcatagtttgcaccttcaggtgttgattggtgtcgtggatagtggtggtgacttgtgagcaacgacgaactgcctttgttgctcttggaaaaggacaatcactgaaacagtgtccagacttacgacacttgagacaaaaccgacTTGGttggtcctggggtgcaagcttctggtaatgcactttgacagctgaaactggaacaagtagtgacttatgaacatccttggtgacgttgcttcttacatggttggcttccaatggagctacagttggaggaagagcagaagggttgtgactgttgttgtcggccgtctttggctgacgagtgggtttcacggttgtcccttgttctttcttggtcttagctaggaccgagttccgctgacaatccttaggcacatgatcggttccctcacacaagaaacacat
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| CDS seq | atgtgtttcttgtgtgagggaaccgatcatgtgcctaaggattgtcagcggaactcggtcctagctaagaccaagaaagaacaagggacaaccgtgaaacccactcgtcagccaaagacggccgacaacaacagtcacaacccttctgctcttcctccaactgtagctccattggaagccaaccatgtaagaagcaacgtcaccaaggatgttcataagtcactacttgttccagtttcagctgtcaaagtgcattaccagaagcttgcaccccaggaccaaCCAAgtcggttttgtctcaagtgtcgtaagtctggacactgtttcagtgattgtccttttccaagagcaacaaaggcagttcgtcgttgctcacaagtcaccaccactatccacgacaccaatcaacacctgaagattatcgtcaagggcatcgtcaaaggccacactattccacccgcaatcgtttcaagcctacaacaccagcaccagcagggtaagcaatcccagggaaacaacaatccgttacagcgacaaaggggtagttcactccttTgtcagcacccgcagcaagtgttgtcagcaataggtcgcccaactatcgccagtcctagcaatgcgcctcgtattgctccacttcagaggttcattggcaaatcaccgcttggtaacaccacgagcaagaagaacctacctgctacagttgtctaa
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| Protein seq | MCFLCEGTDHVPKDCQRNSVLAKTKKEQGTTVKPTRQPKTADNNSHNPSALPPTVAPLEANHVRSNVTKDVHKSLLVPVSAVKVHYQKLAPQDQPSRFCLKCRKSGHCFSDCPFPRATKAVRRCSQVTTTIHDTNQHLKIIVKGIVKGHTIPPAIVSSLQHQHQQGKQSQGNNNPLQRQRGSSLLCQHPQQVLSAIGRPTIASPSNAPRIAPLQRFIGKSPLGNTTSKKNLPATVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0004640 | OsLima_04g0004640.01 | Chr04 | 8099752 | 8100483 | - | NAM | ||
| CDS seq | atgtgtttcttgtgtgagggaaccgatcatgtgcctaaggattgtcagcggaactcggtcctagctaagaccaagaaagaacaagggacaaccgtgaaacccactcgtcagccaaagacggccgacaacaacagtcacaacccttctgctcttcctccaactgtagctccattggaagccaaccatgtaagaagcaacgtcaccaaggatgttcataagtcactacttgttccagtttcagctgtcaaagtgcattaccagaagcttgcaccccaggaccaaCCAAgtcggttttgtctcaagtgtcgtaagtctggacactgtttcagtgattgtccttttccaagagcaacaaaggcagttcgtcgttgctcacaagtcaccaccactatccacgacaccaatcaacacctgaagattatcgtcaagggcatcgtcaaaggccacactattccacccgcaatcgtttcaagcctacaacaccagcaccagcagggtaagcaatcccagggaaacaacaatccgttacagcgacaaaggggtagttcactccttTgtcagcacccgcagcaagtgttgtcagcaataggtcgcccaactatcgccagtcctagcaatgcgcctcgtattgctccacttcagaggttcattggcaaatcaccgcttggtaacaccacgagcaagaagaacctacctgctacagttgtctaa
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| Protein seq | MCFLCEGTDHVPKDCQRNSVLAKTKKEQGTTVKPTRQPKTADNNSHNPSALPPTVAPLEANHVRSNVTKDVHKSLLVPVSAVKVHYQKLAPQDQPSRFCLKCRKSGHCFSDCPFPRATKAVRRCSQVTTTIHDTNQHLKIIVKGIVKGHTIPPAIVSSLQHQHQQGKQSQGNNNPLQRQRGSSLLCQHPQQVLSAIGRPTIASPSNAPRIAPLQRFIGKSPLGNTTSKKNLPATVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004700 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003800 | SBH | 0.0 | 0.049904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005670 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005850 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003930 | SBH | 0.239811 | 2.758251 | 2.939431 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005480 | SBH | 0.0 | 0.0 | 0.0 |
