Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0003700 | OGI:04020560 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:6745252-6748992 | ||||||||
| Gene Symbol | LR10, OsLR10 | ||||||||||
| DNA seq | atggcagaaattttagtgagcgcatctactggagcaatgaattctcttctcaagaaattggccgctatgctacgctatgaatacaagctgcacaaggatgtgtatgaagacatagagtttatgaaagatgagcttgaggccatgcgagcgttcctgttgaaaatgtcagaggttgaggatccagacgtgcaagccaagctccggatcagggctgtgcgagagctatcgtatgatatcgaggactacatcgacaagtccatggtcctaatcgatcatgaaccttcttccaggactcgtggctttaaggagtttatcgacaagagcaagaatttgttgacaaaactcaagactcaacatcaaattgccaaggacataaaggtcattaagaagcaagtcatagaggtaagtgagaggttcacaaggtacaaggttgatgaaggaacttcgaagctgcaaaattcgaccacccacgagtatgcgcaatatataaagatgcatctgaccttgttggcattcatgagcctgtagaagacatcatcaagtgcttcacatatgaggatgaattggcaaaagatctgaaagttgtctccatagttggattcggaggactaggcaaaacgactcttgccaaccaagtgtaccgcaaacttgctgccaagtttgagtgtcgagcttttgtgtcaatttctcggaatcctgatatgagaagcattttgaaatctttgttatcccaaatctgcaatcaagaatatgtccagaccgacgcatgggatgagaatcaaattattagcacaatcagaaaacttcttgAaaagaaaaggtatgtgagtaaatcctttcatgctttattttcaagctgtattattctaattaaaagtctcttttattcttgtgtggcattgatgtttcctttgattcaagatagttcatgtgtagtcctttggtggcttagtgccctgttttgaatgtgtagcaGatgtgtttctaggtggtgttgccaggtgaaaccctagaattcctgtagtcctgttatatttctttataataaagctggctcaaaaggtttctgatcttaaagaaagtggtttctctttgtGtttttcaaaacatagcatgacatatgcacattttggactcttttcgcacaggcgattctgtaaagcactcaagaGggagtttacagcaagaatctaaaccaaattccaaacaaactttctcatcctaacaggtgctgaaactttcaaggggtcaccctaggtgttttccattggagatttgctccggtccaacaaaaagtaccttgatacctcacggtaccaaatcgtttccgatcgttgaatctaacaatgttcatcctgctcagctagatccaacgatcggaaatgatctggtaccgtgagataccggtatctcaagatactttttgctagactggagcatatctcttcttgtggacatgtagagtatccctattcgtctaattaatgttatttataaaagatttgctccattccggacatgtagagtatccctattcgtctaattaatgttatttataaaagatttgctccattccagcaaaaagtatctcgaggttccggtacctcacggtactaaatcgtttccgatcattggatctagctgggcaggatgggcattattagatccaacgaccgaaaacgatttagtaccttaaggtaccaatacctcgagatactttttgcacgaccgttgcaaatctctatttataataaggtacagatttttcgtacaaccatttgacaggtacattgtaatagttgatgatatatggagcataccaacatgggaaattattgagtgtgcttttccaaaagaaggattgcaagagtcgaataatcacaactacacgcaaaatcgatgtagcgcaaagctgagcttctcagggtgatcttgtttacagaatgaaaccccttagtagcattgattctaaaaggttattcttgaaaagaatatttgactctgaggaaaattgcccttctcaccttgtcgaagcttcgaatgcaatattgaggaaatgtggtggtttgccattggcaatcattaccacatctagcctgttggctaacaagaacaaaacagatcaatgggatcggatacaaagatccattggttatgcacttgcagagaattcagattttaaggcataagatattatctctcagctatttcgacctacctcaacatctcagaacttgcttgttgtttctgactatattcccagaagattttaggattcctcgaatgcatttgatagatagatggatagctgaaggattcattcaaggagatagtcgacaaaacctatataaattgggaaattcttatttctatgaacttattaacagaagcttagtccagccattggaaatacgcattgatgaccaagcgcggagttgtcgagtccatgacaccatccacgatttcctcttgtccaagtctattgaagagaactttgctgctacaatcaactatccacagcttacatgtttgtcaactccagatatgaaggttcgtcgactatctctgatacagggacacgagcaatcagacataattatttctccaagctggaatttatcgcagcttagatccctactattttttggggtgcaaagcaactacccactttctccaacttcagcaccttgcgtgtgctggacttgtggttttgtgctgaatgtggattagaaaaccatcatcttgagactgtgacaagactttctcagttgaggtacctgacaatccaagggaagaagataactgaacttccaagaaaatttggagatctcAaatgtctagaggtgctagatgtcatagctacatcggtaaaaagaactgcctaaatctactactcagctgcagcgattagctgttctgtatgtcaatgatggaacaaagttgcctgatcaattcaaaaatatgcaaatgttagaagaggtagtaggcatagatgtattcagacactcgatggaatttctggagggactgtgtgagctgaaaaacctgtggaggttgagcataaattgggatattgacaggctagaaggtaataaagtgagatacaaggaaataatagcatctctctgcaaactagaagcctgcaatctccatgatctgagcattcatgttcacttgagaaacaacgatgatttctcttccttgttactacctctaaatagcattaaaagttttgtactcagaggagaaagcatttccaaggttaacatatggctgagctcccttgtgagcatccggcgattggctcttactattaaggacatagatcaagatgatcttcaggtccttggaagtatacccagtttgacaaatttgtacctatgtttagacccagaccaaaatgaaagatctattgccatcagcgacatccatggattccaacagttggagcctttcactttccaatctacgcatacgggtctgatgtttgaagctggatctatgccaaggcttggacaactttcgtttggaatcaatgtagctaatttcaagtcaacatatggtggTttttgtctaggcatccagcacctgtcctgcctcactatggtcagtgtcagtacaaatcgtttgggtgcaaagcttggagatgtggaagccgtagaggatgctttcaggtgcatggtagaagcacatccaaaccagcccactctagaaattgaaactgacaatttacgtgaatga
More
|
||||||||||
| CDS seq | atggcagaaattttagtgagcgcatctactggagcaatgaattctcttctcaagaaattggccgctatgctacgctatgaatacaagctgcacaaggatgtgtatgaagacatagagtttatgaaagatgagcttgaggccatgcgagcgttcctgttgaaaatgtcagaggttgaggatccagacgtgcaagccaagctccggatcagggctgtgcgagagctatcgtatgatatcgaggactacatcgacaagtccatggtcctaatcgatcatgaaccttcttccaggactcgtggctttaaggagtttatcgacaagagcaagaatttgttgacaaaactcaagactcaacatcaaattgccaaggacataaaggtcattaagaagcaagtcatagaggtaagtgagaggttcacaaggaacttcgaagctgcaaaattcgaccacccacgagtatgcgcaatatataaagatgcatctgaccttgttggcattcatgagcctgtagaagacatcatcaagtgcttcacatatgaggatgaattggcaaaagatctgaaagttgtctccatagttggattcggaggactaggcaaaacgactcttgccaaccaagtgtaccgcaaacttgctgccaagtttgagtgtcgagcttttgtgtcaatttctcggaatcctgatatgagaagcattttgaaatctttgttatcccaaatctgcaatcaagaatatgtccagaccgacgcatgggatgagaatcaaattattagcacaatcagaaaacttcttgAaaagaaaagaagcttagtccagccattggaaatacgcattgatgaccaagcgcggagttgtcgagtccatgacaccatccacgatttcctcttgtccaagtctattgaagagaactttgctgctacaatcaactatccacagcttacatgtttgtcaactccagatatgaagatccctactattttttggggtgcaaagcaactacccactttctccaacttcagcaccttgcgtgtgctggacttgtggttttgtgctgaatgtggattagaaaaccatcatcttgagactgtgacaagactttctcagttgaggtacctgacaatccaagggaagaagataactgaacttccaagaaaatttggagatctcAaatgtctagaggtgctagatgtcatagctacatcgcgattagctgttctgtatgtcaatgatggaacaaagttgcctgatcaattcaaaaatatgcaaatgttagaagaggtagtaggcatagatgtattcagacactcgatggaatttctggagggactgtgtgagctgaaaaacctgtggaggttgagcataaattgggatattgacaggctagaaggtaataaagtgagatacaaggaaataatagcatctctctgcaaactagaagcctgcaatctccatgatctgagcattcatgttcacttgagaaacaacgatgatttctcttccttgttactacctctaaatagcattaaaagttttgtactcagaggagaaagcatttccaaggttaacatatggctgagctcccttgtgagcatccggcgattggctcttactattaaggacatagatcaagatgatcttcaggtccttggaagtatacccagtttgacaaatttgtacctatgtttagacccagaccaaaatgaaagatctattgccatcagcgacatccatggattccaacagttggagcctttcactttccaatctacgcatacgggtctgatgtttgaagctggatctatgccaaggcttggacaactttcgtttggaatcaatgtagctaatttcaagtcaacatatggtggTttttgtctaggcatccagcacctgtcctgcctcactatggtcagtgtcagtacaaatcgtttgggtgcaaagcttggagatgtggaagccgtagaggatgctttcaggtgcatggtagaagcacatccaaaccagcccactctagaaattgaaactgacaatttacgtgaatga
More
|
||||||||||
| Protein seq | MAEILVSASTGAMNSLLKKLAAMLRYEYKLHKDVYEDIEFMKDELEAMRAFLLKMSEVEDPDVQAKLRIRAVRELSYDIEDYIDKSMVLIDHEPSSRTRGFKEFIDKSKNLLTKLKTQHQIAKDIKVIKKQVIEVSERFTRNFEAAKFDHPRVCAIYKDASDLVGIHEPVEDIIKCFTYEDELAKDLKVVSIVGFGGLGKTTLANQVYRKLAAKFECRAFVSISRNPDMRSILKSLLSQICNQEYVQTDAWDENQIISTIRKLLEKKRSLVQPLEIRIDDQARSCRVHDTIHDFLLSKSIEENFAATINYPQLTCLSTPDMKIPTIFWGAKQLPTFSNFSTLRVLDLWFCAECGLENHHLETVTRLSQLRYLTIQGKKITELPRKFGDLKCLEVLDVIATSRLAVLYVNDGTKLPDQFKNMQMLEEVVGIDVFRHSMEFLEGLCELKNLWRLSINWDIDRLEGNKVRYKEIIASLCKLEACNLHDLSIHVHLRNNDDFSSLLLPLNSIKSFVLRGESISKVNIWLSSLVSIRRLALTIKDIDQDDLQVLGSIPSLTNLYLCLDPDQNERSIAISDIHGFQQLEPFTFQSTHTGLMFEAGSMPRLGQLSFGINVANFKSTYGGFCLGIQHLSCLTMVSVSTNRLGAKLGDVEAVEDAFRCMVEAHPNQPTLEIETDNLRE |
||||||||||
| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003700 | OsLima_04g0003700.01 | Chr04 | 6745252 | 6748992 | + | NAM | ||
| CDS seq | atggcagaaattttagtgagcgcatctactggagcaatgaattctcttctcaagaaattggccgctatgctacgctatgaatacaagctgcacaaggatgtgtatgaagacatagagtttatgaaagatgagcttgaggccatgcgagcgttcctgttgaaaatgtcagaggttgaggatccagacgtgcaagccaagctccggatcagggctgtgcgagagctatcgtatgatatcgaggactacatcgacaagtccatggtcctaatcgatcatgaaccttcttccaggactcgtggctttaaggagtttatcgacaagagcaagaatttgttgacaaaactcaagactcaacatcaaattgccaaggacataaaggtcattaagaagcaagtcatagaggtaagtgagaggttcacaaggaacttcgaagctgcaaaattcgaccacccacgagtatgcgcaatatataaagatgcatctgaccttgttggcattcatgagcctgtagaagacatcatcaagtgcttcacatatgaggatgaattggcaaaagatctgaaagttgtctccatagttggattcggaggactaggcaaaacgactcttgccaaccaagtgtaccgcaaacttgctgccaagtttgagtgtcgagcttttgtgtcaatttctcggaatcctgatatgagaagcattttgaaatctttgttatcccaaatctgcaatcaagaatatgtccagaccgacgcatgggatgagaatcaaattattagcacaatcagaaaacttcttgAaaagaaaagaagcttagtccagccattggaaatacgcattgatgaccaagcgcggagttgtcgagtccatgacaccatccacgatttcctcttgtccaagtctattgaagagaactttgctgctacaatcaactatccacagcttacatgtttgtcaactccagatatgaagatccctactattttttggggtgcaaagcaactacccactttctccaacttcagcaccttgcgtgtgctggacttgtggttttgtgctgaatgtggattagaaaaccatcatcttgagactgtgacaagactttctcagttgaggtacctgacaatccaagggaagaagataactgaacttccaagaaaatttggagatctcAaatgtctagaggtgctagatgtcatagctacatcgcgattagctgttctgtatgtcaatgatggaacaaagttgcctgatcaattcaaaaatatgcaaatgttagaagaggtagtaggcatagatgtattcagacactcgatggaatttctggagggactgtgtgagctgaaaaacctgtggaggttgagcataaattgggatattgacaggctagaaggtaataaagtgagatacaaggaaataatagcatctctctgcaaactagaagcctgcaatctccatgatctgagcattcatgttcacttgagaaacaacgatgatttctcttccttgttactacctctaaatagcattaaaagttttgtactcagaggagaaagcatttccaaggttaacatatggctgagctcccttgtgagcatccggcgattggctcttactattaaggacatagatcaagatgatcttcaggtccttggaagtatacccagtttgacaaatttgtacctatgtttagacccagaccaaaatgaaagatctattgccatcagcgacatccatggattccaacagttggagcctttcactttccaatctacgcatacgggtctgatgtttgaagctggatctatgccaaggcttggacaactttcgtttggaatcaatgtagctaatttcaagtcaacatatggtggTttttgtctaggcatccagcacctgtcctgcctcactatggtcagtgtcagtacaaatcgtttgggtgcaaagcttggagatgtggaagccgtagaggatgctttcaggtgcatggtagaagcacatccaaaccagcccactctagaaattgaaactgacaatttacgtgaatga
More
|
|||||||
| Protein seq | MAEILVSASTGAMNSLLKKLAAMLRYEYKLHKDVYEDIEFMKDELEAMRAFLLKMSEVEDPDVQAKLRIRAVRELSYDIEDYIDKSMVLIDHEPSSRTRGFKEFIDKSKNLLTKLKTQHQIAKDIKVIKKQVIEVSERFTRNFEAAKFDHPRVCAIYKDASDLVGIHEPVEDIIKCFTYEDELAKDLKVVSIVGFGGLGKTTLANQVYRKLAAKFECRAFVSISRNPDMRSILKSLLSQICNQEYVQTDAWDENQIISTIRKLLEKKRSLVQPLEIRIDDQARSCRVHDTIHDFLLSKSIEENFAATINYPQLTCLSTPDMKIPTIFWGAKQLPTFSNFSTLRVLDLWFCAECGLENHHLETVTRLSQLRYLTIQGKKITELPRKFGDLKCLEVLDVIATSRLAVLYVNDGTKLPDQFKNMQMLEEVVGIDVFRHSMEFLEGLCELKNLWRLSINWDIDRLEGNKVRYKEIIASLCKLEACNLHDLSIHVHLRNNDDFSSLLLPLNSIKSFVLRGESISKVNIWLSSLVSIRRLALTIKDIDQDDLQVLGSIPSLTNLYLCLDPDQNERSIAISDIHGFQQLEPFTFQSTHTGLMFEAGSMPRLGQLSFGINVANFKSTYGGFCLGIQHLSCLTMVSVSTNRLGAKLGDVEAVEDAFRCMVEAHPNQPTLEIETDNLRE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0193950 | RBH | 0.097075 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11760 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0193950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003730 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004250 | RBH | 0.0 | 0.224728 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003860 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003740 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0094500 | RBH | 0.1314955 | 0.754916 | 0.1404075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003870 | RBH | 0.000000 | 0.0 | 0.051675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0098000 | RBH | 0.293805 | 0.607371 | 0.3278405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003630 | RBH | 0.091432 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003800 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003990 | RBH | 0.167195 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003740 | RBH | 0.0 | 1.885095 | 0.748608 |
