Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0003610 | OGI:04020020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:6467779-6470001 | ||||||||
| Gene Symbol | LR10, OsLR10 | ||||||||||
| DNA seq | atggcgactacagcaatagggggatggatcgcctcagcctgcatatcaaagctggttgataaggtgtgttcttatgcaggagatcagtacgaataccaacgggaagacacaaaggacaaactgagaagccttaaggagagtctactgacagtccaagaattggtatgcagagctgagagattgcaaggtaaggaaacaaacatcgcaaatcagttaaggggaattaaagatgctgcttatcaggctgaggatgttctggaTttatttgattaccgagttctagaagcacaggctgaagtcatggacaaggtgaccactaaagctcaagtcatgggcaaggtgaccactaactcaatttcatctgccatagctggttcttcttcatcctgttcctcttcatcatcctccataaccacccttagcagtgattcaacagtaaaacggtcagttcgtgctctcaaacgattccttttctgtgatgaagatctcactaagttagctgctgcagtgactatatttaatgagattgatagtcggatgaaaacactcctggagttactgaagctagaaaacagggcaccagaacatccagttcagtggcgcacaacaacctcaatgctggacaccacaaagtttttcggacgggttagtgaaggtaaacacctaaagaagttacttattcaGaaaaataaaaagtccagtcaaccttatgatgttatatcaattgttggcattgctggtgtcggtaagactgcgcttgcacaaaaggtgtatagcattttttatgataaagagaaacactttgattttatggcatggctccatgtttcaaataaattcgacgttgaacgcctaataaaagagttggtacagtcagttcacctttgtacagctgctgagttgagcagcatcagtagtttagatcaagctcagaggatacttaaggacaaactgaaaggtagcaggattttggtagtatttgatgatgtatggaatgaaatgagcagccagtgggagaatctgtgcaagcctctgcagtctaccagtaaaggcagcaaactaatagtaactactcgaagtcaaaatgttgcaaacattaacggggcaaccgagatagtgcatttagatggcctagaagatgaagactactgggaacactttttacagtgtgcctttcatgatgcaaatccatcccaatttccacaattggaaagtattggtcaagaattggtaaagaagttggctggttcacctttagcagctcagacagtagggaacttattaaagttcaaactagatgaaaaacactgggagacagtcaatggaagaaaattgtggcagatagaacagaaggaagatggtattatgccagcactgaggttgagctatgtgcgtcttcctgatcatttgaagcagtgcattatttattttgccttattccctaagaattaccaacttcgaggtgatgcactaataaggatgtggagagctcatggtttcgttaacaaggaaacaccagatgaaaccgcatatcgttacatcaatgatcttttacagatttcattcatccgtaaggtagccaatatagaggatcattatgttgttcatgacttgctacatgattttgctgagtcaatctcaaatggtgaacacttccgtatagaagatgatttccatgtcagtattccaacaaatgttcgccacctatatgtcaatgcaagcaacatatctactgtgtatgcaagccttgaagaaaacatagaaataaagaaaaatttgagaagcttaataatatgcaaggcagatgttgcctcctggagctggacccgcacatctaatttcaactatgctctggaagaaacactgaaagagttaggaagcttacgggtattagtgctccaccatcctgctggtgttctgccaaacaacatccagcatatggtccaccttaggtatctggacatcaaagaaagcagagaatttacctttctgcctacatcgttatttggactctaccacttgcaagcattgagtctgcagtctcggtatgtgaataggctaaaaataggactcgaaaatggcatcagcaggttgacccagttaagatacttagatgctccaccaggaataatttcaggcataaaattgattggcaagctcacattcctccaggaattcaaccatggcaatgcaaagaaaagaaaaagaacagcatcattatag
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| CDS seq | atggcgactacagcaatagggggatggatcgcctcagcctgcatatcaaagctggttgataaggtgtgttcttatgcaggagatcagtacgaataccaacgggaagacacaaaggacaaactgagaagccttaaggagagtctactgacagtccaagaattggtatgcagagctgagagattgcaaggtaaggaaacaaacatcgcaaatcagttaaggggaattaaagatgctgcttatcaggctgaggatgttctggaTttatttgattaccgagttctagaagcacaggctgaagtcatggacaaggtgaccactaaagctcaagtcatgggcaaggtgaccactaactcaatttcatctgccatagctggttcttcttcatcctgttcctcttcatcatcctccataaccacccttagcagtgattcaacagtaaaacggtcagttcgtgctctcaaacgattccttttctgtgatgaagatctcactaagttagctgctgcagtgactatatttaatgagattgatagtcggatgaaaacactcctggagttactgaagctagaaaacagggcaccagaacatccagttcagtggcgcacaacaacctcaatgctggacaccacaaagtttttcggacgggttagtgaaggtaaacacctaaagaagttacttattcaGaaaaataaaaagtccagtcaaccttatgatgttatatcaattgttggcattgctggtgtcggtaagactgcgcttgcacaaaaggtgtatagcattttttatgataaagagaaacactttgattttatggcatggctccatgtttcaaataaattcgacgttgaacgcctaataaaagagttggtacagtcagttcacctttgtacagctgctgagttgagcagcatcagtagtttagatcaagctcagaggatacttaaggacaaactgaaaggtagcaggattttggtagtatttgatgatgtatggaatgaaatgagcagccagtgggagaatctgtgcaagcctctgcagtctaccagtaaaggcagcaaactaatagtaactactcgaagtcaaaatgttgcaaacattaacggggcaaccgagatagtgcatttagatggcctagaagatgaagactactgggaacactttttacagtgtgcctttcatgatgcaaatccatcccaatttccacaattggaaagtattggtcaagaattggtaaagaagttggctggttcacctttagcagctcagacagtagggaacttattaaagttcaaactagatgaaaaacactgggagacagtcaatggaagaaaattgtggcagatagaacagaaggaagatggtattatgccagcactgaggttgagctatgtgcgtcttcctgatcatttgaagcagtgcattatttattttgccttattccctaagaattaccaacttcgaggtgatgcactaataaggatgtggagagctcatggtttcgttaacaaggaaacaccagatgaaaccgcatatcgttacatcaatgatcttttacagatttcattcatccgtaaggtagccaatatagaggatcattatgttgttcatgacttgctacatgattttgctgagtcaatctcaaatggtgaacacttccgtatagaagatgatttccatgtcagtattccaacaaatgttcgccacctatatgtcaatgcaagcaacatatctactgtgtatgcaagccttgaagaaaacatagaaataaagaaaaatttgagaagcttaataatatgcaaggcagatgttgcctcctggagctggacccgcacatctaatttcaactatgctctggaagaaacactgaaagagttaggaagcttacgggtattagtgctccaccatcctgctggtgttctgccaaacaacatccagcatatggtccaccttaggtatctggacatcaaagaaagcagagaatttacctttctgcctacatcgttatttggactctaccacttgcaagcattgagtctgcagtctcggtatgtgaataggctaaaaataggactcgaaaatggcatcagcaggttgacccagttaagatacttagatgctccaccaggaataatttcaggcataaaattgattggcaagctcacattcctccaggaattcaaccatggcaatgcaaagaaaagaaaaagaacagcatcattatag
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| Protein seq | MATTAIGGWIASACISKLVDKVCSYAGDQYEYQREDTKDKLRSLKESLLTVQELVCRAERLQGKETNIANQLRGIKDAAYQAEDVLDLFDYRVLEAQAEVMDKVTTKAQVMGKVTTNSISSAIAGSSSSCSSSSSSITTLSSDSTVKRSVRALKRFLFCDEDLTKLAAAVTIFNEIDSRMKTLLELLKLENRAPEHPVQWRTTTSMLDTTKFFGRVSEGKHLKKLLIQKNKKSSQPYDVISIVGIAGVGKTALAQKVYSIFYDKEKHFDFMAWLHVSNKFDVERLIKELVQSVHLCTAAELSSISSLDQAQRILKDKLKGSRILVVFDDVWNEMSSQWENLCKPLQSTSKGSKLIVTTRSQNVANINGATEIVHLDGLEDEDYWEHFLQCAFHDANPSQFPQLESIGQELVKKLAGSPLAAQTVGNLLKFKLDEKHWETVNGRKLWQIEQKEDGIMPALRLSYVRLPDHLKQCIIYFALFPKNYQLRGDALIRMWRAHGFVNKETPDETAYRYINDLLQISFIRKVANIEDHYVVHDLLHDFAESISNGEHFRIEDDFHVSIPTNVRHLYVNASNISTVYASLEENIEIKKNLRSLIICKADVASWSWTRTSNFNYALEETLKELGSLRVLVLHHPAGVLPNNIQHMVHLRYLDIKESREFTFLPTSLFGLYHLQALSLQSRYVNRLKIGLENGISRLTQLRYLDAPPGIISGIKLIGKLTFLQEFNHGNAKKRKRTASL |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003610 | OsLima_04g0003610.01 | Chr04 | 6467779 | 6470001 | + | NAM | ||
| CDS seq | atggcgactacagcaatagggggatggatcgcctcagcctgcatatcaaagctggttgataaggtgtgttcttatgcaggagatcagtacgaataccaacgggaagacacaaaggacaaactgagaagccttaaggagagtctactgacagtccaagaattggtatgcagagctgagagattgcaaggtaaggaaacaaacatcgcaaatcagttaaggggaattaaagatgctgcttatcaggctgaggatgttctggaTttatttgattaccgagttctagaagcacaggctgaagtcatggacaaggtgaccactaaagctcaagtcatgggcaaggtgaccactaactcaatttcatctgccatagctggttcttcttcatcctgttcctcttcatcatcctccataaccacccttagcagtgattcaacagtaaaacggtcagttcgtgctctcaaacgattccttttctgtgatgaagatctcactaagttagctgctgcagtgactatatttaatgagattgatagtcggatgaaaacactcctggagttactgaagctagaaaacagggcaccagaacatccagttcagtggcgcacaacaacctcaatgctggacaccacaaagtttttcggacgggttagtgaaggtaaacacctaaagaagttacttattcaGaaaaataaaaagtccagtcaaccttatgatgttatatcaattgttggcattgctggtgtcggtaagactgcgcttgcacaaaaggtgtatagcattttttatgataaagagaaacactttgattttatggcatggctccatgtttcaaataaattcgacgttgaacgcctaataaaagagttggtacagtcagttcacctttgtacagctgctgagttgagcagcatcagtagtttagatcaagctcagaggatacttaaggacaaactgaaaggtagcaggattttggtagtatttgatgatgtatggaatgaaatgagcagccagtgggagaatctgtgcaagcctctgcagtctaccagtaaaggcagcaaactaatagtaactactcgaagtcaaaatgttgcaaacattaacggggcaaccgagatagtgcatttagatggcctagaagatgaagactactgggaacactttttacagtgtgcctttcatgatgcaaatccatcccaatttccacaattggaaagtattggtcaagaattggtaaagaagttggctggttcacctttagcagctcagacagtagggaacttattaaagttcaaactagatgaaaaacactgggagacagtcaatggaagaaaattgtggcagatagaacagaaggaagatggtattatgccagcactgaggttgagctatgtgcgtcttcctgatcatttgaagcagtgcattatttattttgccttattccctaagaattaccaacttcgaggtgatgcactaataaggatgtggagagctcatggtttcgttaacaaggaaacaccagatgaaaccgcatatcgttacatcaatgatcttttacagatttcattcatccgtaaggtagccaatatagaggatcattatgttgttcatgacttgctacatgattttgctgagtcaatctcaaatggtgaacacttccgtatagaagatgatttccatgtcagtattccaacaaatgttcgccacctatatgtcaatgcaagcaacatatctactgtgtatgcaagccttgaagaaaacatagaaataaagaaaaatttgagaagcttaataatatgcaaggcagatgttgcctcctggagctggacccgcacatctaatttcaactatgctctggaagaaacactgaaagagttaggaagcttacgggtattagtgctccaccatcctgctggtgttctgccaaacaacatccagcatatggtccaccttaggtatctggacatcaaagaaagcagagaatttacctttctgcctacatcgttatttggactctaccacttgcaagcattgagtctgcagtctcggtatgtgaataggctaaaaataggactcgaaaatggcatcagcaggttgacccagttaagatacttagatgctccaccaggaataatttcaggcataaaattgattggcaagctcacattcctccaggaattcaaccatggcaatgcaaagaaaagaaaaagaacagcatcattatag
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| Protein seq | MATTAIGGWIASACISKLVDKVCSYAGDQYEYQREDTKDKLRSLKESLLTVQELVCRAERLQGKETNIANQLRGIKDAAYQAEDVLDLFDYRVLEAQAEVMDKVTTKAQVMGKVTTNSISSAIAGSSSSCSSSSSSITTLSSDSTVKRSVRALKRFLFCDEDLTKLAAAVTIFNEIDSRMKTLLELLKLENRAPEHPVQWRTTTSMLDTTKFFGRVSEGKHLKKLLIQKNKKSSQPYDVISIVGIAGVGKTALAQKVYSIFYDKEKHFDFMAWLHVSNKFDVERLIKELVQSVHLCTAAELSSISSLDQAQRILKDKLKGSRILVVFDDVWNEMSSQWENLCKPLQSTSKGSKLIVTTRSQNVANINGATEIVHLDGLEDEDYWEHFLQCAFHDANPSQFPQLESIGQELVKKLAGSPLAAQTVGNLLKFKLDEKHWETVNGRKLWQIEQKEDGIMPALRLSYVRLPDHLKQCIIYFALFPKNYQLRGDALIRMWRAHGFVNKETPDETAYRYINDLLQISFIRKVANIEDHYVVHDLLHDFAESISNGEHFRIEDDFHVSIPTNVRHLYVNASNISTVYASLEENIEIKKNLRSLIICKADVASWSWTRTSNFNYALEETLKELGSLRVLVLHHPAGVLPNNIQHMVHLRYLDIKESREFTFLPTSLFGLYHLQALSLQSRYVNRLKIGLENGISRLTQLRYLDAPPGIISGIKLIGKLTFLQEFNHGNAKKRKRTASL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0112100 | SBH | 0.526747 | 0.875333 | 0.279886 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11430 | RBH | 0.068400 | 0.0 | 0.203993 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003640 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004150 | RBH | 0.0 | 0.483762 | 0.335985 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003670 | RBH | 0.0 | 0.0 | 1.191359 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003690 | RBH | 0.000000 | 0.000000 | 0.491820 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0091300 | RBH | 0.434348 | 2.5582425 | 1.486456 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003760 | RBH | 0.038918 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0094200 | RBH | 0.5465595 | 2.2661955 | 2.5999255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003850 | RBH | 0.082051 | 1.345492 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003640 | RBH | 1.059704 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003540 | RBH | 0.0 | 0.0 | 0.104244 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003690 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003880 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003680 | RBH | 0.106893 | 0.0 | 0.351920 |
